TCONS_00073579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073579
Unique NameTCONS_00073579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073579 ID=TCONS_00073579|Name=TCONS_00073579|organism=Clytia hemisphaerica|type=transcript|length=685bp
CTTGGATTATAACGTTCGAACGAATAAGAGCAGTTTTGTCTTTTTCATCT
AGAAAGAAGGCATTCAAAATGGACGAAGTGTTTATCTCAAACATGTACAA
ACTTACATGGGGCGCAGAGAAATATTTCCTgggaaaacaacaaaaaagaa
ttttgtattcatcataTCAAGAATGGTATCAATCCTTGGTACAGGAACTG
TTGCCAACTCCTTGTATGTATTATGGTAACAGTCGATATTCCTTTATGAA
GATCACACGAGGAAGTGGAAATGAGAAGTTAGTGTCAAGCAGCAATGGAA
TCACCATCAACAATACCAACCGATCAACGAGCGTAGTTGGAAGTTCACCA
GTCTCCGGATGCGCAAACTATTTCTTGTTGCATCCAACAGATCTCCAAAC
ATGTAGTGAGCTCAAGAAAAATGTCCACGAGAGTTCAATGAGAAGTGGGG
AGAGTATTCTAACTTGGGATATCGAATTGCATAAAGTTGACCCAGATTAC
CAAATGACCCAACAATATTTTATAATATTAGGAATTTTGAACTGAGAACT
TGTAAATCTTTTAATAATCTACTAAACTTTACGATTGGACTAATTATTGT
AAGATTACATATATCATTTTCAGGGATGTTatccagaaaatgaaaattat
ttcagaTTATATaactaaaatgaaagaaaatcaaC
Run BLAST on NCBI

protein sequence of TCONS_00073579-protein

>TCONS_00073579-protein ID=TCONS_00073579-protein|Name=TCONS_00073579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
WIITFERIRAVLSFSSRKKAFKMDEVFISNMYKLTWGAEKYFLGKQQKRI
LYSSYQEWYQSLVQELLPTPCMYYGNSRYSFMKITRGSGNEKLVSSSNGI
TINNTNRSTSVVGSSPVSGCANYFLLHPTDLQTCSELKKNVHESSMRSGE
SILTWDIELHKVDPDYQMTQQYFIILGILN
Run BLAST on NCBI

transcript from alignment at scaffold_94:331723..332407

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073579 ID=TCONS_00073579|Name=TCONS_00073579|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at scaffold_94:331723..332407 (Clytia hemisphaerica)
GttgattttctttcattttagttATATAAtctgaaataattttcattttc
tggatAACATCCCTGAAAATGATATATGTAATCTTACAATAATTAGTCCA
ATCGTAAAGTTTAGTAGATTATTAAAAGATTTACAAGTTCTCAGTTCAAA
ATTCCTAATATTATAAAATATTGTTGGGTCATTTGGTAATCTGGGTCAAC
TTTATGCAATTCGATATCCCAAGTTAGAATACTCTCCCCACTTCTCATTG
AACTCTCGTGGACATTTTTCTTGAGCTCACTACATGTTTGGAGATCTGTT
GGATGCAACAAGAAATAGTTTGCGCATCCGGAGACTGGTGAACTTCCAAC
TACGCTCGTTGATCGGTTGGTATTGTTGATGGTGATTCCATTGCTGCTTG
ACACTAACTTCTCATTTCCACTTCCTCGTGTGATCTTCATAAAGGAATAT
CGACTGTTACCATAATACATACAAGGAGTTGGCAACAGTTCCTGTACCAA
GGATTGATACCATTCTTGAtatgatgaatacaaaattcttttttgttgtt
ttcccAGGAAATATTTCTCTGCGCCCCATGTAAGTTTGTACATGTTTGAG
ATAAACACTTCGTCCATTTTGAATGCCTTCTTTCTAGATGAAAAAGACAA
AACTGCTCTTATTCGTTCGAACGTTATAATCCAAG

Coding sequence (CDS) from alignment at scaffold_94:331723..332407

>TCONS_00073579 ID=TCONS_00073579|Name=TCONS_00073579|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_94:331723..332407 (Clytia hemisphaerica)
TCAGTTCAAAATTCCTAATATTATAAAATATTGTTGGGTCATTTGGTAAT
CTGGGTCAACTTTATGCAATTCGATATCCCAAGTTAGAATACTCTCCCCA
CTTCTCATTGAACTCTCGTGGACATTTTTCTTGAGCTCACTACATGTTTG
GAGATCTGTTGGATGCAACAAGAAATAGTTTGCGCATCCGGAGACTGGTG
AACTTCCAACTACGCTCGTTGATCGGTTGGTATTGTTGATGGTGATTCCA
TTGCTGCTTGACACTAACTTCTCATTTCCACTTCCTCGTGTGATCTTCAT
AAAGGAATATCGACTGTTACCATAATACATACAAGGAGTTGGCAACAGTT
CCTGTACCAAGGATTGATACCATTCTTGAtatgatgaatacaaaattctt
ttttgttgttttcccAGGAAATATTTCTCTGCGCCCCATGTAAGTTTGTA
CATGTTTGAGATAAACACTTCGTCCATTTTGAATGCCTTCTTTCTAGATG
AAAAAGACAAAACTGCTCTTATTCGTTCGAACGTTATAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045681XLOC_045681Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073579-proteinTCONS_00073579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073579-exon-scaffold_94-1491911889:331723..332407TCONS_00073579-exon-scaffold_94-1491911889:331723..332407Clytia hemisphaericaexon
TCONS_00073579-exon-scaffold_94-1510915933:331723..332407TCONS_00073579-exon-scaffold_94-1510915933:331723..332407Clytia hemisphaericaexon
TCONS_00073579-exon-scaffold_94-1575043694:331723..332407TCONS_00073579-exon-scaffold_94-1575043694:331723..332407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:331723..332407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149066	0	0.16878	0	0	0.0794259	0.670768	0.627965	2.26107	2.72291	4.07765	3.82217	11.4506	10.3987	23.3196	29.204	12.4296	10.8555	5.70458	5.80362	2.73839	2.42533	9.76462	12.1979	28.2481	24.7822	4.80338	7.52584	22.6669	20.9026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top