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TCONS_00073575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073575
Unique NameTCONS_00073575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073575 ID=TCONS_00073575|Name=TCONS_00073575|organism=Clytia hemisphaerica|type=transcript|length=565bp
GTCACCAATATCCAAAGATACTTCCGGTCGTCCAAAAGCCATCTGTTCTG
CGAGTCATCGCTTACAATTTGATTAAAATGCAGAACGACGTGACCCCCGT
CTTAATAATGGNGCCACCTGTTCTGCGAGTCATCGCTTACAATTTGATTA
AAATACAGAACGACGTGACCCCTGTCTTAATAATGCTTAGTTTGATCGCG
TTGTCATGGACACTAATTACCTTCTTTTATTTTCGTGAATTAAAACACAT
CCCTGGGAAGGTGATGTTTTTATTAACTTGTGTTCTTTATATGTATTATG
TGGTCCATTTGAAGTTCATCCTGAAACACTTCACCTGGGGGGAGAGCCAA
AACATGGTGGTCCTCCTTCGCTGGTGTGCCATTTGCAAATACGTTCTCAT
AACTTTTCTTTGCTACCATTTACGTAATTTCCAACATTACTACACTAAAC
CGAAATCGATGCAACGTTTTTATTTGGTCGTCCAGGCGACAGGTGTCATT
ATCGTAGCAACCGTATTGTTAATcatcggccaatcaaatcacgcCTTCCA
TTTAGAATCGTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_94:313744..314308

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073575 ID=TCONS_00073575|Name=TCONS_00073575|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at scaffold_94:313744..314308 (Clytia hemisphaerica)
AAATACGATTCTAAATGGAAGgcgtgatttgattggccgatgATTAACAA TACGGTTGCTACGATAATGACACCTGTCGCCTGGACGACCAAATAAAAAC GTTGCATCGATTTCGGTTTAGTGTAGTAATGTTGGAAATTACGTAAATGG TAGCAAAGAAAAGTTATGAGAACGTATTTGCAAATGGCACACCAGCGAAG GAGGACCACCATGTTTTGGCTCTCCCCCCAGGTGAAGTGTTTCAGGATGA ACTTCAAATGGACCACATAATACATATAAAGAACACAAGTTAATAAAAAC ATCACCTTCCCAGGGATGTGTTTTAATTCACGAAAATAAAAGAAGGTAAT TAGTGTCCATGACAACGCGATCAAACTAAGCATTATTAAGACAGGGGTCA CGTCGTTCTGTATTTTAATCAAATTGTAAGCGATGACTCGCAGAACAGGT GGCNCCATTATTAAGACGGGGGTCACGTCGTTCTGCATTTTAATCAAATT GTAAGCGATGACTCGCAGAACAGATGGCTTTTGGACGACCGGAAGTATCT TTGGATATTGGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045677XLOC_045677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073575-exon-scaffold_94-1491911889:313744..314308TCONS_00073575-exon-scaffold_94-1491911889:313744..314308Clytia hemisphaericaexon
TCONS_00073575-exon-scaffold_94-1510915933:313744..314308TCONS_00073575-exon-scaffold_94-1510915933:313744..314308Clytia hemisphaericaexon
TCONS_00073575-exon-scaffold_94-1575043694:313744..314308TCONS_00073575-exon-scaffold_94-1575043694:313744..314308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:313744..314308 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0971809 0.112836 0.331178 0.134392 0.106199 0.128124 0 0 0 0 0.199112 2.91625 2.27142 0.396118 0.30364 0.448871 0.306719 3.7078 2.66053 0.963536 0.422981 0 0.311648 0.427987 1.62337 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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