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TCONS_00073573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073573
Unique NameTCONS_00073573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073573 ID=TCONS_00073573|Name=TCONS_00073573|organism=Clytia hemisphaerica|type=transcript|length=369bp
GGACAACCACATTATGCAGAGAGTTCTGTTTCCCACGGTACAAGGCGATA
AATTCGTACGTGAGCATGCAGATATAAAGATACTTGGTCACAACACACCA
GTGGATTAGTATTGGAATATAATTCCGCACTTTCTTTGGAGGTTCGTAAA
CGACACATAAAAATTGAAGACAAAAGTAGAATAGTAGGATGAAGGTGATA
GCAAGTAGCCACTGTCCTGGTGGGTGTTGAAGGCCTTTAATGGTGATACA
GGTTGTGATGATCACGAGAAGGGAGAGGATACTGATGGGAATCAAGAGAG
GGTACCAGACAATGATGAACTTATCGAAACCTGCTCGAAATTCAGCGAAT
GAAACATCGTGAATAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00073573-protein

>TCONS_00073573-protein ID=TCONS_00073573-protein|Name=TCONS_00073573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
FIHDVSFAEFRAGFDKFIIVWYPLLIPISILSLLVIITTCITIKGLQHPP
GQWLLAITFILLFYFCLQFLCVVYEPPKKVRNYIPILIHWCVVTKYLYIC
MLTYEFIALYRGKQNSLHNVVV
Run BLAST on NCBI

transcript from alignment at scaffold_94:307528..307896

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073573 ID=TCONS_00073573|Name=TCONS_00073573|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_94:307528..307896 (Clytia hemisphaerica)
CCTTTATTCACGATGTTTCATTCGCTGAATTTCGAGCAGGTTTCGATAAG TTCATCATTGTCTGGTACCCTCTCTTGATTCCCATCAGTATCCTCTCCCT TCTCGTGATCATCACAACCTGTATCACCATTAAAGGCCTTCAACACCCAC CAGGACAGTGGCTACTTGCTATCACCTTCATCCTACTATTCTACTTTTGT CTTCAATTTTTATGTGTCGTTTACGAACCTCCAAAGAAAGTGCGGAATTA TATTCCAATACTAATCCACTGGTGTGTTGTGACCAAGTATCTTTATATCT GCATGCTCACGTACGAATTTATCGCCTTGTACCGTGGGAAACAGAACTCT CTGCATAATGTGGTTGTCC

Coding sequence (CDS) from alignment at scaffold_94:307528..307896

>TCONS_00073573 ID=TCONS_00073573|Name=TCONS_00073573|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_94:307528..307896 (Clytia hemisphaerica)
TTTATTCACGATGTTTCATTCGCTGAATTTCGAGCAGGTTTCGATAAGTT
CATCATTGTCTGGTACCCTCTCTTGATTCCCATCAGTATCCTCTCCCTTC
TCGTGATCATCACAACCTGTATCACCATTAAAGGCCTTCAACACCCACCA
GGACAGTGGCTACTTGCTATCACCTTCATCCTACTATTCTACTTTTGTCT
TCAATTTTTATGTGTCGTTTACGAACCTCCAAAGAAAGTGCGGAATTATA
TTCCAATACTAATCCACTGGTGTGTTGTGACCAAGTATCTTTATATCTGC
ATGCTCACGTACGAATTTATCGCCTTGTACCGTGGGAAACAGAACTCTCT
GCATAATGTGGTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045675XLOC_045675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073573-proteinTCONS_00073573-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073573-exon-scaffold_94-1491911889:307528..307896TCONS_00073573-exon-scaffold_94-1491911889:307528..307896Clytia hemisphaericaexon
TCONS_00073573-exon-scaffold_94-1510915933:307528..307896TCONS_00073573-exon-scaffold_94-1510915933:307528..307896Clytia hemisphaericaexon
TCONS_00073573-exon-scaffold_94-1575043694:307528..307896TCONS_00073573-exon-scaffold_94-1575043694:307528..307896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:307528..307896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.502121 0 0 0 0 0 0 0 1.34789 0 3.3918 3.67557 0.629545 0.405359 0 0.853062 2.3571 2.95984 0.64316 0.627422 0.508476 0.924557 1.90454 2.1247 0 0.324484 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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