Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073572
Unique NameTCONS_00073572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073572 ID=TCONS_00073572|Name=TCONS_00073572|organism=Clytia hemisphaerica|type=transcript|length=257bp
CNGTTTCGAgataacttttatcaaaattttgtctttcatcattttcaaaa
gctGATGCAACATAAATACTACTCATGCTGGTTGTTGAAAGTTCTGTGAT
ATCACTGTCCAGTAGATTATGGTCATCGTTGTGTTGGTATCTGTCGTAAA
TCTCAAATAACAGTCCATCGACAGCTGTCTTGGATTTTGTAGGAGAAAAC
CCATTATTTAGGTTTGGGTGTGAGGAGATTGTTTCCTCACTGGAGGTCGA
GATGNAA
Run BLAST on NCBI

transcript from alignment at scaffold_94:303230..303486

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073572 ID=TCONS_00073572|Name=TCONS_00073572|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at scaffold_94:303230..303486 (Clytia hemisphaerica)
TTNCATCTCGACCTCCAGTGAGGAAACAATCTCCTCACACCCAAACCTAA ATAATGGGTTTTCTCCTACAAAATCCAAGACAGCTGTCGATGGACTGTTA TTTGAGATTTACGACAGATACCAACACAACGATGACCATAATCTACTGGA CAGTGATATCACAGAACTTTCAACAACCAGCATGAGTAGTATTTATGTTG CATCagcttttgaaaatgatgaaagacaaaattttgataaaagttatcTC GAAACNG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045674XLOC_045674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073572-exon-scaffold_94-1491911889:303230..303486TCONS_00073572-exon-scaffold_94-1491911889:303230..303486Clytia hemisphaericaexon
TCONS_00073572-exon-scaffold_94-1510915933:303230..303486TCONS_00073572-exon-scaffold_94-1510915933:303230..303486Clytia hemisphaericaexon
TCONS_00073572-exon-scaffold_94-1575043694:303230..303486TCONS_00073572-exon-scaffold_94-1575043694:303230..303486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:303230..303486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.49807 8.71242 3.1126 2.28389 32.4383 27.0979 50.3641 46.323 17.9533 25.8249 22.2811 14.6467 17.3688 21.8351 11.7075 13.8203 5.67515 17.9793 12.4197 15.2898 11.9607 6.80632 11.032 10.7461 15.4955 29.6343 5.65421 6.03433 6.10243 8.54894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top