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TCONS_00073571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073571
Unique NameTCONS_00073571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073571 ID=TCONS_00073571|Name=TCONS_00073571|organism=Clytia hemisphaerica|type=transcript|length=492bp
ANGTTTTTGTGGTGATCGATTCCTAGCCTCGACCTCTTCAGTGGAAGACG
AAAATGAGGCTGAATTCTGCCATTTTAGAACATCACGTCTCGACTTCAAA
TCACTCTGAGAAAGAGGCTGTTGATGGGCGGGATCGTTCTTTTTGAATGT
AAAAACATTAGAAGAAGTCCTACGTTTTACTTTACGATGATTTCTTGTAT
TGTAAGGATCGAAACTTGATTCCTGGTTCGACGAGTCGGAATCTGCATCG
CAAACTTTGTCTACATCATCACCGTCATCTAACCGTACCGGTGAAAACAC
ACCACTACTATGGCTATCATGCGAAGGTGAGCTGTCTTGTCGAcgaaatt
ctgaaaaatctaTTTCCTCAAATGTTGCAGATGTAAATCCAGTGTCATCG
TCAATCTTCTCTGGAATCATATGAGCCATGGAATATGGTTTGTATCTTTA
ATAAAGCATTGTTTAAAATTACTTTTAGTCATTACCTAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00073571-protein

>TCONS_00073571-protein ID=TCONS_00073571-protein|Name=TCONS_00073571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MAHMIPEKIDDDTGFTSATFEEIDFSEFRRQDSSPSHDSHSSGVFSPVRL
DDGDDVDKVCDADSDSSNQESSFDPYNTRNHRKVKRRTSSNVFTFKKNDP
AHQQPLSQSDLKSRRDVLKWQNSASFSSSTEEVEARNRSPQKX
Run BLAST on NCBI

transcript from alignment at scaffold_94:302575..303066

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073571 ID=TCONS_00073571|Name=TCONS_00073571|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_94:302575..303066 (Clytia hemisphaerica)
GTTTTAGGTAATGACTAAAAGTAATTTTAAACAATGCTTTATTAAAGATA CAAACCATATTCCATGGCTCATATGATTCCAGAGAAGATTGACGATGACA CTGGATTTACATCTGCAACATTTGAGGAAAtagatttttcagaatttcgT CGACAAGACAGCTCACCTTCGCATGATAGCCATAGTAGTGGTGTGTTTTC ACCGGTACGGTTAGATGACGGTGATGATGTAGACAAAGTTTGCGATGCAG ATTCCGACTCGTCGAACCAGGAATCAAGTTTCGATCCTTACAATACAAGA AATCATCGTAAAGTAAAACGTAGGACTTCTTCTAATGTTTTTACATTCAA AAAGAACGATCCCGCCCATCAACAGCCTCTTTCTCAGAGTGATTTGAAGT CGAGACGTGATGTTCTAAAATGGCAGAATTCAGCCTCATTTTCGTCTTCC ACTGAAGAGGTCGAGGCTAGGAATCGATCACCACAAAAACNT

Coding sequence (CDS) from alignment at scaffold_94:302575..303066

>TCONS_00073571 ID=TCONS_00073571|Name=TCONS_00073571|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_94:302575..303066 (Clytia hemisphaerica)
ATGGCTCATATGATTCCAGAGAAGATTGACGATGACACTGGATTTACATC
TGCAACATTTGAGGAAAtagatttttcagaatttcgTCGACAAGACAGCT
CACCTTCGCATGATAGCCATAGTAGTGGTGTGTTTTCACCGGTACGGTTA
GATGACGGTGATGATGTAGACAAAGTTTGCGATGCAGATTCCGACTCGTC
GAACCAGGAATCAAGTTTCGATCCTTACAATACAAGAAATCATCGTAAAG
TAAAACGTAGGACTTCTTCTAATGTTTTTACATTCAAAAAGAACGATCCC
GCCCATCAACAGCCTCTTTCTCAGAGTGATTTGAAGTCGAGACGTGATGT
TCTAAAATGGCAGAATTCAGCCTCATTTTCGTCTTCCACTGAAGAGGTCG
AGGCTAGGAATCGATCACCACAAAAACNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045673XLOC_045673Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073571-exon-scaffold_94-1491911889:302575..303066TCONS_00073571-exon-scaffold_94-1491911889:302575..303066Clytia hemisphaericaexon
TCONS_00073571-exon-scaffold_94-1510915933:302575..303066TCONS_00073571-exon-scaffold_94-1510915933:302575..303066Clytia hemisphaericaexon
TCONS_00073571-exon-scaffold_94-1575043694:302575..303066TCONS_00073571-exon-scaffold_94-1575043694:302575..303066Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073571-proteinTCONS_00073571-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:302575..303066 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.89787 5.74569 3.12273 1.80529 20.7943 18.5694 23.5314 28.9707 15.8462 25.3856 14.3521 15.2789 8.671 7.44638 7.40327 8.78516 7.34055 10.8999 10.3946 11.435 4.96953 3.90199 7.18694 10.193 16.8246 15.0155 6.53211 3.85253 7.65288 6.52119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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