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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073570 ID=TCONS_00073570|Name=TCONS_00073570|organism=Clytia hemisphaerica|type=transcript|length=739bp
CAAGCGCTGCGACAGAGGCATGTGGAGGTACAGATAGATAGCATCTGATT
TCCAGTCACCCATCACTGCAATCGTGTCAAGTGGGATCCCAGCCTCTAAT
GCAAAAGAGGCTCCTCCACGCCGAAAGGAATGTGAGCCGTACTGAGACGA
GGAAAGGCCAATGTTGGAGAGATGGTTGCGGAGAGAAAGCATGAAGTCTC
TGTAGGTGAAAATCCTATTTGAGCCATAAAACGAGTCCCTCCAACAAAAG
GCCTGAGCTTGGGGTCTCGCCCCAGGGGTCAACTGAAAAGCGTGGTTTAC
AGCCGAAACAGGAGAAAGGGGAGAAGACATGGTAACCAAGGGTATAGTAA
CAGTGCGTTGACCCAGCTGCATAGTCTTGCTCCACCTGACCCTGATGTAA
ACTGTAGAAGGATCCAGGGTGAAGTCAGACCTGACAAGAAAGGTAGCTGG
GGAAAAATCCTGATGGGAGAGAGGGAGGAGGTGACTCTTcctaaacaaac
caaaaaagGAAACAAGGCAAATAGCCCAAAAAGAAGCGTGCTTGCTGTCA
GAAAGTTCCAAATGCTGCCGGATACGGTAAAGAATATCAGTCATAATAGG
AAGTCTAGGCACTGGAGGGGATCCATTGGTGCGTTTGATACCTTTGAGAA
CCGAGCTCAAAAACCAATTATCTGCCAAGGGATTAACCAAACCATAGTCC
TTGTGGAGTAGGCCAACATAACTAATGTAGACGCAAANN Run BLAST on NCBI protein sequence of TCONS_00073570-protein >TCONS_00073570-protein ID=TCONS_00073570-protein|Name=TCONS_00073570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
XCVYISYVGLLHKDYGLVNPLADNWFLSSVLKGIKRTNGSPPVPRLPIMT
DILYRIRQHLELSDSKHASFWAICLVSFFGLFRKSHLLPLSHQDFSPATF
LVRSDFTLDPSTVYIRVRWSKTMQLGQRTVTIPLVTMSSPLSPVSAVNHA
FQLTPGARPQAQAFCWRDSFYGSNRIFTYRDFMLSLRNHLSNIGLSSSQY
GSHSFRRGGASFALEAGIPLDTIAVMGDWKSDAIYLYLHMPLSQRL Run BLAST on NCBI transcript from alignment at scaffold_94:298437..299175 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073570 ID=TCONS_00073570|Name=TCONS_00073570|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at scaffold_94:298437..299175 (Clytia hemisphaerica)
NNTTTGCGTCTACATTAGTTATGTTGGCCTACTCCACAAGGACTATGGTT
TGGTTAATCCCTTGGCAGATAATTGGTTTTTGAGCTCGGTTCTCAAAGGT
ATCAAACGCACCAATGGATCCCCTCCAGTGCCTAGACTTCCTATTATGAC
TGATATTCTTTACCGTATCCGGCAGCATTTGGAACTTTCTGACAGCAAGC
ACGCTTCTTTTTGGGCTATTTGCCTTGTTTCcttttttggtttgtttagg
AAGAGTCACCTCCTCCCTCTCTCCCATCAGGATTTTTCCCCAGCTACCTT
TCTTGTCAGGTCTGACTTCACCCTGGATCCTTCTACAGTTTACATCAGGG
TCAGGTGGAGCAAGACTATGCAGCTGGGTCAACGCACTGTTACTATACCC
TTGGTTACCATGTCTTCTCCCCTTTCTCCTGTTTCGGCTGTAAACCACGC
TTTTCAGTTGACCCCTGGGGCGAGACCCCAAGCTCAGGCCTTTTGTTGGA
GGGACTCGTTTTATGGCTCAAATAGGATTTTCACCTACAGAGACTTCATG
CTTTCTCTCCGCAACCATCTCTCCAACATTGGCCTTTCCTCGTCTCAGTA
CGGCTCACATTCCTTTCGGCGTGGAGGAGCCTCTTTTGCATTAGAGGCTG
GGATCCCACTTGACACGATTGCAGTGATGGGTGACTGGAAATCAGATGCT
ATCTATCTGTACCTCCACATGCCTCTGTCGCAGCGCTTG Coding sequence (CDS) from alignment at scaffold_94:298437..299175 >TCONS_00073570 ID=TCONS_00073570|Name=TCONS_00073570|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_94:298437..299175 (Clytia hemisphaerica)
NTTTGCGTCTACATTAGTTATGTTGGCCTACTCCACAAGGACTATGGTTT
GGTTAATCCCTTGGCAGATAATTGGTTTTTGAGCTCGGTTCTCAAAGGTA
TCAAACGCACCAATGGATCCCCTCCAGTGCCTAGACTTCCTATTATGACT
GATATTCTTTACCGTATCCGGCAGCATTTGGAACTTTCTGACAGCAAGCA
CGCTTCTTTTTGGGCTATTTGCCTTGTTTCcttttttggtttgtttaggA
AGAGTCACCTCCTCCCTCTCTCCCATCAGGATTTTTCCCCAGCTACCTTT
CTTGTCAGGTCTGACTTCACCCTGGATCCTTCTACAGTTTACATCAGGGT
CAGGTGGAGCAAGACTATGCAGCTGGGTCAACGCACTGTTACTATACCCT
TGGTTACCATGTCTTCTCCCCTTTCTCCTGTTTCGGCTGTAAACCACGCT
TTTCAGTTGACCCCTGGGGCGAGACCCCAAGCTCAGGCCTTTTGTTGGAG
GGACTCGTTTTATGGCTCAAATAGGATTTTCACCTACAGAGACTTCATGC
TTTCTCTCCGCAACCATCTCTCCAACATTGGCCTTTCCTCGTCTCAGTAC
GGCTCACATTCCTTTCGGCGTGGAGGAGCCTCTTTTGCATTAGAGGCTGG
GATCCCACTTGACACGATTGCAGTGATGGGTGACTGGAAATCAGATGCTA
TCTATCTGTACCTCCACATGCCTCTGTCGCAGCGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073570-exon-scaffold_94-1491911889:298437..299175 | TCONS_00073570-exon-scaffold_94-1491911889:298437..299175 | Clytia hemisphaerica | exon |
| TCONS_00073570-exon-scaffold_94-1510915933:298437..299175 | TCONS_00073570-exon-scaffold_94-1510915933:298437..299175 | Clytia hemisphaerica | exon |
| TCONS_00073570-exon-scaffold_94-1575043694:298437..299175 | TCONS_00073570-exon-scaffold_94-1575043694:298437..299175 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:298437..299175 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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