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TCONS_00073566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073566
Unique NameTCONS_00073566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073566 ID=TCONS_00073566|Name=TCONS_00073566|organism=Clytia hemisphaerica|type=transcript|length=898bp
tgacgtaaaagcagtcaatacgtcactttcaaccaatcagctattgggtg
gaacagaagacattgcaatggtgcatatcatgaatatatctATCGAATAG
AACCTAAACCCCTCAACCCCCGACAAAGTAtgaattcagtggggatggaa
acaATAACGCAATATTTAGCCTTGAGGATTTTCTCGTCTGATTTTTTCAG
CAGGTACagaaattagagtataattttccactgagagcgatattttggat
aatttttctggtgggaaggggtcccagtggggcTGCGATAAAAGGGTGAT
TTAAACGAATTTTTAAGCGTATTGAGAATCAGATAAAAGTGAGTCTACAA
AATAACCCTAATCCatgttttttatattgaaaCTTAACTAATCTTAATAA
AATGATACAAAAAGATCAAGTTAACCTAAaacataaataaattttttcta
ggCGTTCTTCTACATCCCACGATTATCCATAAATAATGTTTATGTTTTAG
TGGCATAGAAATACTTCATAAATGACCGTCACACAGACTTCAACTTCTGC
TTCATTTCGATAACAAACATAAACTGAGTGGTATTGAGAAATGCAATTTG
AATCATCCCGGTTCGATTGATCTGTTAAATAGTGAATATCCACACATTGA
TCAAACTTGGTGTTCCAACATCGGCTGAAGAGAGACGGCCCAGGCGTTGC
TTTTCCGTTGCCAATACATGCTGCACTTGCTTGGTCCTTGCAGGTATTTT
CAATTGATTCACTTGGATAATTATACCCAATTGACCCAGCATTGACAAGA
AGAGAGAAGACACTGAACACAGCaactaaaatctttattaaaggCATTTT
TCCTATTCCTCCTCGCTTTTTTGTCTTAGTCTCCTCGTTCATTgaact
Run BLAST on NCBI

protein sequence of TCONS_00073566-protein

>TCONS_00073566-protein ID=TCONS_00073566-protein|Name=TCONS_00073566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
SSMNEETKTKKRGGIGKMPLIKILVAVFSVFSLLVNAGSIGYNYPSESIE
NTCKDQASAACIGNGKATPGPSLFSRCWNTKFDQCVDIHYLTDQSNRDDS
NCISQYHSVYVCYRNEAEVEVCVTVIYEVFLCH
Run BLAST on NCBI

transcript from alignment at scaffold_94:230585..231482

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073566 ID=TCONS_00073566|Name=TCONS_00073566|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at scaffold_94:230585..231482 (Clytia hemisphaerica)
agttcAATGAACGAGGAGACTAAGACAAAAAAGCGAGGAGGAATAGGAAA AATGcctttaataaagattttagttGCTGTGTTCAGTGTCTTCTCTCTTC TTGTCAATGCTGGGTCAATTGGGTATAATTATCCAAGTGAATCAATTGAA AATACCTGCAAGGACCAAGCAAGTGCAGCATGTATTGGCAACGGAAAAGC AACGCCTGGGCCGTCTCTCTTCAGCCGATGTTGGAACACCAAGTTTGATC AATGTGTGGATATTCACTATTTAACAGATCAATCGAACCGGGATGATTCA AATTGCATTTCTCAATACCACTCAGTTTATGTTTGTTATCGAAATGAAGC AGAAGTTGAAGTCTGTGTGACGGTCATTTATGAAGTATTTCTATGCCACT AAAACATAAACATTATTTATGGATAATCGTGGGATGTAGAAGAACGccta gaaaaaatttatttatgttTTAGGTTAACTTGATCTTTTTGTATCATTTT ATTAAGATTAGTTAAGtttcaatataaaaaacatGGATTAGGGTTATTTT GTAGACTCACTTTTATCTGATTCTCAATACGCTTAAAAATTCGTTTAAAT CACCCTTTTATCGCAgccccactgggaccccttcccaccagaaaaattat ccaaaatatcgctctcagtggaaaattatactctaatttctGTACCTGCT GAAAAAATCAGACGAGAAAATCCTCAAGGCTAAATATTGCGTTATtgttt ccatccccactgaattcaTACTTTGTCGGGGGTTGAGGGGTTTAGGTTCT ATTCGATagatatattcatgatatgcaccattgcaatgtcttctgttcca cccaatagctgattggttgaaagtgacgtattgactgcttttacgtca

Coding sequence (CDS) from alignment at scaffold_94:230585..231482

>TCONS_00073566 ID=TCONS_00073566|Name=TCONS_00073566|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_94:230585..231482 (Clytia hemisphaerica)
agttcAATGAACGAGGAGACTAAGACAAAAAAGCGAGGAGGAATAGGAAA
AATGcctttaataaagattttagttGCTGTGTTCAGTGTCTTCTCTCTTC
TTGTCAATGCTGGGTCAATTGGGTATAATTATCCAAGTGAATCAATTGAA
AATACCTGCAAGGACCAAGCAAGTGCAGCATGTATTGGCAACGGAAAAGC
AACGCCTGGGCCGTCTCTCTTCAGCCGATGTTGGAACACCAAGTTTGATC
AATGTGTGGATATTCACTATTTAACAGATCAATCGAACCGGGATGATTCA
AATTGCATTTCTCAATACCACTCAGTTTATGTTTGTTATCGAAATGAAGC
AGAAGTTGAAGTCTGTGTGACGGTCATTTATGAAGTATTTCTATGCCACT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045668XLOC_045668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073566-exon-scaffold_94-1491911889:230585..231482TCONS_00073566-exon-scaffold_94-1491911889:230585..231482Clytia hemisphaericaexon
TCONS_00073566-exon-scaffold_94-1510915933:230585..231482TCONS_00073566-exon-scaffold_94-1510915933:230585..231482Clytia hemisphaericaexon
TCONS_00073566-exon-scaffold_94-1575043694:230585..231482TCONS_00073566-exon-scaffold_94-1575043694:230585..231482Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073566-proteinTCONS_00073566-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:230585..231482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413216 0.251372 0.529136 0.521386 0 0.0556583 0.866753 1.56063 90.8412 52.307 40.0128 85.1799 0 0 0.0294296 0.12634 0.0391021 0 0.279837 0.0578458 0.0505555 0.148873 0.0592664 0 0 0.0988694 0 0 0 0.175133
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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