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TCONS_00073563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073563
Unique NameTCONS_00073563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=transcript|length=883bp
TTTCTTTTGAGATTGAGACTTCTAAGGAGCGTGAATTGCAGGAAAAAATA
GATCTGcttgaaaaaaagaattcagAACTCATATCAGAATTTGAAGCAAA
AGTTTATACCCTGGAAAAGAACAATTCTGAACTAACTAAGAACGTTAAGA
ATTTAACTCGTGCAATTAAATCATCGAATGGAATTGTTCAGGCACAAAAG
gtgtttttgggaaaattatgtgtattgagaaaaaaatgtgaGTGTAAGAA
ATCAATGGAGGATCAATTGCTTACCTCTGActgtaaaacaaaattttaca
cTGGAATAGAAAATTTGCAATCGTTTTGTAACCTTCATGACTTATGTAAG
CCTTATATCATGAACAAATCCAAAGAGAACATCGCTTGGGGGTGGCTACA
AACGCAACTtcaagaaaaaggtcacaaaactTGGGAGAAAACCGAAGCTC
TCATCAGAAGATGAGCTATTGTTGACCCTGATGAAGCTTCACCTTGGTTT
GATGGAGGAGGATTTGGCTCATCGTTTTGGTACATCAACCACACACGTCT
CCAACACCTTCATAACCTGGATTAAAGTGCTTTTCCTAGTTTTACGCAAT
ATTGTTTTTGTGCCTAACCAGGGTCAGTTAAACTTCACTCAACCACAACG
TTTTGACAAAAATAGGGATGTTTGCCAAATCATAGACTGTTTTGAATGCT
TTATTGAAACGCCAAAGTCCTTAGATCTGCAAAAACTTTCGTGGTCAGAA
TACAAACACCACAACACTATCAAAGTTCTGGTTGGGTGCTCGCCAAATTC
TTCAGTGACCTTCATATCTCAATCGTTCCCTGGAAGCATCAGTGACAAAG
GAATAGTAAAAAACtctgaattttttaaatctg
Run BLAST on NCBI

protein sequence of TCONS_00073563-protein

>TCONS_00073563-protein ID=TCONS_00073563-protein|Name=TCONS_00073563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
SFEIETSKERELQEKIDLLEKKNSELISEFEAKVYTLEKNNSELTKNVKN
LTRAIKSSNGIVQAQKVFLGKLCVLRKKCECKKSMEDQLLTSDCKTKFYT
GIENLQSFCNLHDLCKPYIMNKSKENIAWGWLQTQLQEKGHKTWEKTEAL
IRR
Run BLAST on NCBI

transcript from alignment at scaffold_94:175934..176816

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at scaffold_94:175934..176816 (Clytia hemisphaerica)
cagatttaaaaaattcagaGTTTTTTACTATTCCTTTGTCACTGATGCTT CCAGGGAACGATTGAGATATGAAGGTCACTGAAGAATTTGGCGAGCACCC AACCAGAACTTTGATAGTGTTGTGGTGTTTGTATTCTGACCACGAAAGTT TTTGCAGATCTAAGGACTTTGGCGTTTCAATAAAGCATTCAAAACAGTCT ATGATTTGGCAAACATCCCTATTTTTGTCAAAACGTTGTGGTTGAGTGAA GTTTAACTGACCCTGGTTAGGCACAAAAACAATATTGCGTAAAACTAGGA AAAGCACTTTAATCCAGGTTATGAAGGTGTTGGAGACGTGTGTGGTTGAT GTACCAAAACGATGAGCCAAATCCTCCTCCATCAAACCAAGGTGAAGCTT CATCAGGGTCAACAATAGCTCATCTTCTGATGAGAGCTTCGGTTTTCTCC CAagttttgtgacctttttcttgaAGTTGCGTTTGTAGCCACCCCCAAGC GATGTTCTCTTTGGATTTGTTCATGATATAAGGCTTACATAAGTCATGAA GGTTACAAAACGATTGCAAATTTTCTATTCCAgtgtaaaattttgtttta cagTCAGAGGTAAGCAATTGATCCTCCATTGATTTCTTACACtcacattt ttttctcaatacacataattttcccaaaaacacCTTTTGTGCCTGAACAA TTCCATTCGATGATTTAATTGCACGAGTTAAATTCTTAACGTTCTTAGTT AGTTCAGAATTGTTCTTTTCCAGGGTATAAACTTTTGCTTCAAATTCTGA TATGAGTTctgaattctttttttcaagCAGATCTATTTTTTCCTGCAATT CACGCTCCTTAGAAGTCTCAATCTCAAAAGAAA

Coding sequence (CDS) from alignment at scaffold_94:175934..176816

>TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_94:175934..176816 (Clytia hemisphaerica)
TCATCTTCTGATGAGAGCTTCGGTTTTCTCCCAagttttgtgaccttttt
cttgaAGTTGCGTTTGTAGCCACCCCCAAGCGATGTTCTCTTTGGATTTG
TTCATGATATAAGGCTTACATAAGTCATGAAGGTTACAAAACGATTGCAA
ATTTTCTATTCCAgtgtaaaattttgttttacagTCAGAGGTAAGCAATT
GATCCTCCATTGATTTCTTACACtcacatttttttctcaatacacataat
tttcccaaaaacacCTTTTGTGCCTGAACAATTCCATTCGATGATTTAAT
TGCACGAGTTAAATTCTTAACGTTCTTAGTTAGTTCAGAATTGTTCTTTT
CCAGGGTATAAACTTTTGCTTCAAATTCTGATATGAGTTctgaattcttt
ttttcaagCAGATCTATTTTTTCCTGCAATTCACGCTCCTTAGAAGTCTC
AATCTCAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045665XLOC_045665Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073563-proteinTCONS_00073563-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073563-exon-scaffold_94-1491911889:175934..176816TCONS_00073563-exon-scaffold_94-1491911889:175934..176816Clytia hemisphaericaexon
TCONS_00073563-exon-scaffold_94-1510915933:175934..176816TCONS_00073563-exon-scaffold_94-1510915933:175934..176816Clytia hemisphaericaexon
TCONS_00073563-exon-scaffold_94-1575043694:175934..176816TCONS_00073563-exon-scaffold_94-1575043694:175934..176816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:175934..176816 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263188 0.117123 0.178797 0.0583083 0.993786 0.72921 0.744413 1.39382 0.931491 0.879087 0.906592 0.876409 0.902835 0.793924 1.34502 2.84456 1.72452 2.03873 1.95842 1.1125 2.01998 1.61263 1.18778 1.12261 0 0 2.14029 1.40881 1.20359 1.34087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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