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TCONS_00073555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073555
Unique NameTCONS_00073555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073555 ID=TCONS_00073555|Name=TCONS_00073555|organism=Clytia hemisphaerica|type=transcript|length=543bp
GTACACCGAATCGGGCAAAGTAGTTTCGTAGACACGTGATGAGTCCTTCA
GATCCAGCTTGTGGTGATCCTTTTGGGGCTTGGAAGACATCTGACCAGCA
AGCCAGGCGATCGCCAACTACGAGGTAGTGCTGTCCAACGCAGTCGAAGA
AGTCAGCATAGCTTTGTTCGAATGGAGTTGTTGGTGGTGAGGCTGCCGAG
GTAGGTAGGGAGGGCTGGGATGGTGCATTACAGATACACTCTTGGCAGGC
TTGTCTGCGATGCTCAATGTCATAAGTCATCCCTGGCCAGAAGACGATGG
AACGTGCACGCAGGCTCATGGTTGATACGCCCTGGTGGGCGGCATGAAGG
GCATCGAGGACTGATGGTTGTAACGCTTGTGGAACAACGACACGATCATT
GTAGATGATGACACCATCTGTGATGTGAAGACTGTCACGGTACTGCCAGT
AAGATGAAGTAGCGGGGTGGTCACGATAGTTTTCGGGGAAGCCGGCAAGA
ACAGCTTGGTATACGAGGGCAAGATTCTGATCGTTTTGGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00073555-protein

>TCONS_00073555-protein ID=TCONS_00073555-protein|Name=TCONS_00073555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
TQNDQNLALVYQAVLAGFPENYRDHPATSSYWQYRDSLHITDGVIIYNDR
VVVPQALQPSVLDALHAAHQGVSTMSLRARSIVFWPGMTYDIEHRRQACQ
ECICNAPSQPSLPTSAASPPTTPFEQSYADFFDCVGQHYLVVGDRLACWS
DVFQAPKGSPQAGSEGLITCLRNYFARFGV
Run BLAST on NCBI

transcript from alignment at scaffold_94:45733..46275

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073555 ID=TCONS_00073555|Name=TCONS_00073555|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at scaffold_94:45733..46275 (Clytia hemisphaerica)
AAACCCAAAACGATCAGAATCTTGCCCTCGTATACCAAGCTGTTCTTGCC GGCTTCCCCGAAAACTATCGTGACCACCCCGCTACTTCATCTTACTGGCA GTACCGTGACAGTCTTCACATCACAGATGGTGTCATCATCTACAATGATC GTGTCGTTGTTCCACAAGCGTTACAACCATCAGTCCTCGATGCCCTTCAT GCCGCCCACCAGGGCGTATCAACCATGAGCCTGCGTGCACGTTCCATCGT CTTCTGGCCAGGGATGACTTATGACATTGAGCATCGCAGACAAGCCTGCC AAGAGTGTATCTGTAATGCACCATCCCAGCCCTCCCTACCTACCTCGGCA GCCTCACCACCAACAACTCCATTCGAACAAAGCTATGCTGACTTCTTCGA CTGCGTTGGACAGCACTACCTCGTAGTTGGCGATCGCCTGGCTTGCTGGT CAGATGTCTTCCAAGCCCCAAAAGGATCACCACAAGCTGGATCTGAAGGA CTCATCACGTGTCTACGAAACTACTTTGCCCGATTCGGTGTAC

Coding sequence (CDS) from alignment at scaffold_94:45733..46275

>TCONS_00073555 ID=TCONS_00073555|Name=TCONS_00073555|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_94:45733..46275 (Clytia hemisphaerica)
ACCCAAAACGATCAGAATCTTGCCCTCGTATACCAAGCTGTTCTTGCCGG
CTTCCCCGAAAACTATCGTGACCACCCCGCTACTTCATCTTACTGGCAGT
ACCGTGACAGTCTTCACATCACAGATGGTGTCATCATCTACAATGATCGT
GTCGTTGTTCCACAAGCGTTACAACCATCAGTCCTCGATGCCCTTCATGC
CGCCCACCAGGGCGTATCAACCATGAGCCTGCGTGCACGTTCCATCGTCT
TCTGGCCAGGGATGACTTATGACATTGAGCATCGCAGACAAGCCTGCCAA
GAGTGTATCTGTAATGCACCATCCCAGCCCTCCCTACCTACCTCGGCAGC
CTCACCACCAACAACTCCATTCGAACAAAGCTATGCTGACTTCTTCGACT
GCGTTGGACAGCACTACCTCGTAGTTGGCGATCGCCTGGCTTGCTGGTCA
GATGTCTTCCAAGCCCCAAAAGGATCACCACAAGCTGGATCTGAAGGACT
CATCACGTGTCTACGAAACTACTTTGCCCGATTCGGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045657XLOC_045657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073555-proteinTCONS_00073555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073555-exon-scaffold_94-1491911889:45733..46275TCONS_00073555-exon-scaffold_94-1491911889:45733..46275Clytia hemisphaericaexon
TCONS_00073555-exon-scaffold_94-1510915933:45733..46275TCONS_00073555-exon-scaffold_94-1510915933:45733..46275Clytia hemisphaericaexon
TCONS_00073555-exon-scaffold_94-1575043694:45733..46275TCONS_00073555-exon-scaffold_94-1575043694:45733..46275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:45733..46275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.637325 1.1394 0.721612 0.941313 1.00271 0.565969 0.819382 1.02279 1.16363 0.77611 0.322848 1.06114 1.27159 1.32056 0.542841 0.841463 0.318958 0.572113 0.67749 0.94526 0.205401 0.601123 0.121791 0.221451 0.570223 0.712474 1.31085 0.466324 0.35369 0.360355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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