TCONS_00073553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073553
Unique NameTCONS_00073553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073553 ID=TCONS_00073553|Name=TCONS_00073553|organism=Clytia hemisphaerica|type=transcript|length=686bp
GATGGAAATATTAAGAGAGGCAAGGAACATGGAGTGTGTTTGTAATGACA
GATTTAAGTTGTGCGCTGTAGAGGTGTTAGAAAGAAACGACATTAACGTT
CAGAATTTTAAAGCGGTAGTTTTGAAGGCTTTGGAATTTGGGCGCGACAA
AATGAACAATGTCTGTTTGTACGGCCTGTCGAATTGTGGTAAAACGTTTC
TTTTGCAGCCACTCCTAAAAATTTATGATACCTTTTCTTCACCCGCAACG
GGTACTTTTGCATGGGTTGGGgcagaaaaaaaagaagtcgTTCTCCTTAA
CGACTTCCGTTTGTCTGAAAAAGTCATCCCATGGTCAGACTTGCTAAATT
TGCTAGAGGGGTGGCCTATCCACATTCCCATGCCCAAAACCTCAAACCCC
GAAGACGTTGTCTGGGAGGCTAAGACGCCCATATTCGCGACCATGGATGC
AATGTTAGTCAAAACGGATGGTAAGACAATCGACAAGAGCAATACCAAGA
TGATGGATAATCGTTGGaactattttgaattttatcgaCCCTTGCGAGTG
ATTCAGAAAATGGAACCCTGTGGTAGATGTTTCGCAAGATTTATGCTTTC
CTAGGTTGATTGCTATATATATAATGTTGTTTATATTATAATGCTTTCAG
agtttgaattatttttcaaatttttcatgtgaGAAC
Run BLAST on NCBI

protein sequence of TCONS_00073553-protein

>TCONS_00073553-protein ID=TCONS_00073553-protein|Name=TCONS_00073553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MEILREARNMECVCNDRFKLCAVEVLERNDINVQNFKAVVLKALEFGRDK
MNNVCLYGLSNCGKTFLLQPLLKIYDTFSSPATGTFAWVGAEKKEVVLLN
DFRLSEKVIPWSDLLNLLEGWPIHIPMPKTSNPEDVVWEAKTPIFATMDA
MLVKTDGKTIDKSNTKMMDNRWNYFEFYRPLRVIQKMEPCGRCFARFMLS
Run BLAST on NCBI

transcript from alignment at scaffold_94:9791..10476

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073553 ID=TCONS_00073553|Name=TCONS_00073553|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at scaffold_94:9791..10476 (Clytia hemisphaerica)
GTTCtcacatgaaaaatttgaaaaataattcaaactCTGAAAGCATTATA
ATATAAACAACATTATATATATAGCAATCAACCTAGGAAAGCATAAATCT
TGCGAAACATCTACCACAGGGTTCCATTTTCTGAATCACTCGCAAGGGtc
gataaaattcaaaatagttCCAACGATTATCCATCATCTTGGTATTGCTC
TTGTCGATTGTCTTACCATCCGTTTTGACTAACATTGCATCCATGGTCGC
GAATATGGGCGTCTTAGCCTCCCAGACAACGTCTTCGGGGTTTGAGGTTT
TGGGCATGGGAATGTGGATAGGCCACCCCTCTAGCAAATTTAGCAAGTCT
GACCATGGGATGACTTTTTCAGACAAACGGAAGTCGTTAAGGAGAAcgac
ttcttttttttctgcCCCAACCCATGCAAAAGTACCCGTTGCGGGTGAAG
AAAAGGTATCATAAATTTTTAGGAGTGGCTGCAAAAGAAACGTTTTACCA
CAATTCGACAGGCCGTACAAACAGACATTGTTCATTTTGTCGCGCCCAAA
TTCCAAAGCCTTCAAAACTACCGCTTTAAAATTCTGAACGTTAATGTCGT
TTCTTTCTAACACCTCTACAGCGCACAACTTAAATCTGTCATTACAAACA
CACTCCATGTTCCTTGCCTCTCTTAATATTTCCATC

Coding sequence (CDS) from alignment at scaffold_94:9791..10476

>TCONS_00073553 ID=TCONS_00073553|Name=TCONS_00073553|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_94:9791..10476 (Clytia hemisphaerica)
CTAGGAAAGCATAAATCTTGCGAAACATCTACCACAGGGTTCCATTTTCT
GAATCACTCGCAAGGGtcgataaaattcaaaatagttCCAACGATTATCC
ATCATCTTGGTATTGCTCTTGTCGATTGTCTTACCATCCGTTTTGACTAA
CATTGCATCCATGGTCGCGAATATGGGCGTCTTAGCCTCCCAGACAACGT
CTTCGGGGTTTGAGGTTTTGGGCATGGGAATGTGGATAGGCCACCCCTCT
AGCAAATTTAGCAAGTCTGACCATGGGATGACTTTTTCAGACAAACGGAA
GTCGTTAAGGAGAAcgacttcttttttttctgcCCCAACCCATGCAAAAG
TACCCGTTGCGGGTGAAGAAAAGGTATCATAAATTTTTAGGAGTGGCTGC
AAAAGAAACGTTTTACCACAATTCGACAGGCCGTACAAACAGACATTGTT
CATTTTGTCGCGCCCAAATTCCAAAGCCTTCAAAACTACCGCTTTAAAAT
TCTGAACGTTAATGTCGTTTCTTTCTAACACCTCTACAGCGCACAACTTA
AATCTGTCATTACAAACACACTCCATGTTCCTTGCCTCTCTTAATATTTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045655XLOC_045655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073553-proteinTCONS_00073553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073553-exon-scaffold_94-1491911889:9791..10476TCONS_00073553-exon-scaffold_94-1491911889:9791..10476Clytia hemisphaericaexon
TCONS_00073553-exon-scaffold_94-1510915933:9791..10476TCONS_00073553-exon-scaffold_94-1510915933:9791..10476Clytia hemisphaericaexon
TCONS_00073553-exon-scaffold_94-1575043694:9791..10476TCONS_00073553-exon-scaffold_94-1575043694:9791..10476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:9791..10476 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41316	1.08794	0.421066	0.164779	0.401205	0.634075	0.382493	0.358085	0.125352	0.232903	0	0.0495345	0.395725	0.565077	0.633504	0.0906463	0.725847	0.343371	0.0790642	0.16547	0.143823	0.105228	0.767511	0.077531	1.51725	1.56791	0	0	0.0825525	0.252324
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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