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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073544 ID=TCONS_00073544|Name=TCONS_00073544|organism=Clytia hemisphaerica|type=transcript|length=1738bp
aaaattttgaattctattgaTCGGTttttaataatcttttttttttgccg
tcaaATGATGAATATTCTTGATGAAAAAAGAAGAGGAAAAAGTCATGATA
AATAAGTGACAGGTTGACGCCTCTTGGAAAANTTTTGAATTCTATTGATC
GGTTCTTAATAATCTTTTTTTGCCGTCAAATGATGAATATTCTTGATGAA
AAAAGAAGAGGAAAAAGTCATGATAAATAAGTGACAGGTTGACGCctctt
ggaaaatatttttttgtgaatttatttgaaactttttcgATTGCCGCTTT
AAACATTAAAACTCTTTGATATATCTCTACGATTATTTATAAGACATGGA
ACTTCTGAGTTATTATGTTAGCATTTTGGTCATCGCAAAATCAGTTAAAA
GTCAGTCGGCAAACTCAATGACACCAAGAAGAGATCGGGCGCCATTGGGA
GATTGCTACCAGTGTGGTCAAGGAAGCGCATACAACAACAAAGAAGCTTG
TATCGGAAACCAACGATTACAACCATGTATCGGGCCAAACAAAGTTTGCA
GAACACTTCACATTTATAACGAACATAAATTCCCGAACGGTACAACAATC
ATGTATAGAGAACATTATAAGAAATCGTGCGAAACTGCTGACCCTAAGGG
ATGTGATTCAAAGtgttatttttacagaaaagaAGGAAGAGCTTGCAAGA
TGCAATGTTGTGCTTACCACGCGTGCAACCAAGACGTCCAGTTCGACAGA
CCGAAAGCACGAGTATCTGAAAGTGTGAGACCAGCTCTTCAGTACGACTC
ATCAGCATCAACTCTATCAGCAACTCTCATTTCTACCCTGATTATATTGC
TACACTTGATATAGATAATACTGTCCGATTGCTTTAAGAGCACCTTTCTT
TTGCTATCATgtagataaataaataaataaataatttacaTCGATAGCCG
AGTAATTTAAGATCtttaatcttttgatttttttgtcacgGGGTCCAGGA
CTTACCAGCTTGGCCATCAAGGAACTGAACggaatacacaggttgcaaaa
ttgaagtctgaagacaaatcacggtTATACTCGAAAGTTTTATGtacttg
ttacatgacatttatttttgattggtttgaaaatttattgacactaataa
agttatcagctgaaagttgtaaagcaagtaacatgggaataaaatcacgt
gaactttttcgagtaatcacatgttttgactgcactgaCATAATTTTTCA
AACCGTGAATTTAGGAATGAGTGGAGATTTGTACCAGGAACCCCTGGATT
CCCTCATTCTTCTCCCACATAGAAATATTTTCAGCGTTGTTAGAGAACGG
TTTTTACATGATAGCAAATGGGGCCCAAAGAGGACTGCATACCTAATAGC
ACACGAACTTTAAATTTGTAATTAATCATTTGCATGGAAATGACATATCA
GAGACTTTTATATCCATGATGACCGCAATGCTCTATCGGATGAACATTAA
ATGCATAGCGTACTGTTGtatggaaaaaaaacaaagtgacTACAAATTTA
CACGTGTCTTTACTTAAAATGACTATCGACGAACACGTGAACGCTTGAAC
ATTTGACACGTAATGGACAAAAGGTTGATATTTTCATTACTTTATGCCCC
AATGGGGCATGGCGAGCATTTTATAATGGTAGAAGCAGCATCAATAGCAT
GGGCAtattttttaactcgaataAATAATAGAATAGAA Run BLAST on NCBI protein sequence of TCONS_00073544-protein >TCONS_00073544-protein ID=TCONS_00073544-protein|Name=TCONS_00073544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MELLSYYVSILVIAKSVKSQSANSMTPRRDRAPLGDCYQCGQGSAYNNKE
ACIGNQRLQPCIGPNKVCRTLHIYNEHKFPNGTTIMYREHYKKSCETADP
KGCDSKCYFYRKEGRACKMQCCAYHACNQDVQFDRPKARVSESVRPALQY
DSSASTLSATLISTLIILLHLI Run BLAST on NCBI transcript from alignment at scaffold_94:386272..391441- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073544 ID=TCONS_00073544|Name=TCONS_00073544|organism=Clytia hemisphaerica|type=transcript|length=5170bp|location=Sequence derived from alignment at scaffold_94:386272..391441- (Clytia hemisphaerica)
AAAATTTTGAATTCTATTGATCGGTTTTTAATAATCTTTTTTTTTTGCCG
TCAAATGATGAATATTCTTGATGAAAAAAGAAGAGGAAAAAGTCATGATA
AATAAGTGACAGGTTGACGCCTCTTGGAAAANTTTTGAATTCTATTGATC
GGTTCTTAATAATCTTTTTTTGCCGTCAAATGATGAATATTCTTGATGAA
AAAAGAAGAGGAAAAAGTCATGATAAATAAGTGACAGGTTGACGCCTCTT
GGAAAATATTTTTTTGTGAATTTATTTGAAACTTTTTCGATTGCCGCTTT
AAACATTAAAACTCTTTGATATATCTCTACGATTATTTATAAGACATGGA
ACTTCTGAGTTATTATGTTAGCATTTTGGTCATCGCAAAATCAGGTATGT
GTTGTCTTAATTATCAATGGCAATGAGCAGTATAGCGTTGTGGCAGGGAG
GGCCGAAGAGCAAGGGGCGCCAAAAGAGATTTTTTTGTACGCCCAAATTT
TAAAAATCATATTTTATGCGCCTTAAATTGCGCCCCAGGACCAATTTTAC
TTAGATAATTTTAAATTTCCTCCAATTTTTTTCGCTCGCTTCGCTCGCAA
TAAAGTTGATTGGTAACTTCTTTGCAATCTAGCTAATTTACAAGTTTTTT
TGTGTACAATATAGCATTATTAAATAAAAATCTAACTGCGCCCCGAGACC
AATTTGCTGACAACAATATTGAAATCATAAAACATCAATTGTTTCGCTCA
CTTCGCTCGCTCTACACATTGCTTCTTTCTTTTCACTCTAGCAAGAGTCA
AATTTGTCTATTTTTATTTAGTGATTTAGGGTATCTTGTCCATTTTCAAC
ATTTTCAATATTTCCTTTCTCGTTATTCCCGCTAGGCAAATGAATTAGTA
AAATTGGGTGGGTGGGAGTGCCACTTTGGAAAATTGGGGGCGCCATTTAA
AAAAAAATTGACTTTGGCCCCTCCAGAAAAATTTTCCCACAACGCCACTG
CCAATGAGCGGATGAAGATTGAAGGATTGATTGATTATCTTTGTTCATAT
TGACCGGGAAATTATAATCTGGAAAATTGTTGTCACGGGTCCCTTTACTC
TTACTAATTTAAAAAATAATTGCCGAAATTTAAATAAATCTGAACCTGGA
TAATTCAGGGATATTGAAAATTATTAGTGAGCTACTAAAGCGAGACCAAT
TTAATTTGTTGTTTTACGGGCAGATCGTTAGCAAAGTATGAGTCAGTCGG
TCTGTAAAAAAAAAAATATATATTTTCATTAATCAACGAAGATAATTAGG
CCTTAAGTAATATTTTTGTTGAGTTTTTTTTTGAAATAAAATCTTTCGTG
CATAGAATTCATGATTCTAGATTCTAGAATCCACGATTCCAGATTCTTTT
CAACTTTTTGTAAGTTAAATTTTTTAAATGACTAGTATTAGAAATTTGTG
GCATAGGAAATTCAATATTATTATTTTTTCGTTTGCAGCAAATGCTAGGT
CGGCCGCGCCCGTAGAACAACAAATTAAATTGGCCTCGCCTAAGAAAAGT
ATTCTACATTGCAATAGATTTGCAATATACTCTACGACATCTGTGTCAGT
ACCCCTGTCGTCATCGTTTAGGTAGTTGGATAAACTAATCTGGTATATTT
GCAATGGGAATAAAGATATGTCGTTTAAAATGCTTGGGATTTCCCCAGCT
GGCACACAACGTTATCTAACGCTCACAACGTCCATTTAACGTCAAATGAA
CGTTGAAACATTGTTGTGTCAGCTGCTGGGTTTAAAATCTTTTGTTTCTA
GCCAAATTTGAAGTAAATGTAAAGCCATATTAATTTCATTTCAGTTAAAA
GTCAGTCGGCAAACTCAATGACACCAAGAAGAGATCGGGCGCCATTGGGA
GATTGCTACCAGTGTGGTCAAGGAAGCGCATACAACAACAAAGAAGCTTG
TATCGGAAACCAACGATTACAACCATGTATCGGGCCAAACAAAGTTTGCA
GAACACTTCACATTTATAACGAACATAAATTCCCGAACGGTACAACAATC
ATGTATAGAGAACATTATAAGAAATCGTGCGAAACTGCTGACCCTAAGGG
ATGTGATTCAAAGTGTTATTTTTACAGAAAAGAAGGAAGAGCTTGCAAGG
TAACTCTAACATTTCATCGAACAGTCAGTGAGGTGATTGTCGTTTAAGAA
TTTCTTCACCAATTCTCAACAAATTATAGTTCAATATTTCAAAATATTTT
GTAAACTTTTTACAATCAGTGCCGAAATATTTGGCGCAAAAGGGGAATTC
CCTCAAAACTTTAAAAGCGCAAGTGCTTTAAAGTACGTTTGGAAAGCAGA
GTCTTAACTCTGAGTTTCAACATTAGTCTTAAGACTTATGATCTCAGGAT
ATAAAGCTAAAAAATATTCCAATATGGCTGAGAATATAGCCTGGAAGCCA
ATTCACCCCTCCCAAACAGAAAAATCCAATGAAACAAAGTGAAAGTACTG
AAACTGCAATTCTCGCCAAAGCTTTAAATTCTAAAATACGTTAAAATCTC
AAAAATTGCCAATATATTTCGATGCTTGCCCCTTTTGAAGAGTGTTTTTT
TTTACTTTTTAAGAAAAGGATATATAAGTGCCCTTAGCGCTCAGATCCGG
GGGGAAGCTGACGGGAATGTACCGCCCGACTTTCGACCCTTGGACCCAAT
TTTGACTAATTTGACCAATATTTCAATATTTTTGGGGCAAAACATGCCCT
TAACCTTCAATTGCCCATTGTCTATTTTTCATAGTATCAAATGACGGTTT
CTGAAACAAAAATAGTTTCAAAAAACTTTTCAACTGAGTTTCTGTCTAGA
CAGAAACAGTCGCAGCAAACCTTTGAAAATTCTCATAGTAGTTATACGAC
AGTGGCAAAAATTGTTTTGCTGAGATTTCTTTGAGGCGGGTAGGCCACTT
AAAACAAAGTTTAGCGATTGACCTGCAGCTTGTTTATGTTTAATTTTGAT
GAAAATTGTTTCAAGTGGTCCGAGACTTTCAGAAAACATTGGTCCGAGCC
GAATTTGTTGAACCTACAGACCCCTGTGTCACAGACTCGCTGGGACCCCA
GCACCACTGAAAATTTGGCAAAAATTTCGTCCCCGGTGGGAAAATACCCT
GGAATTTCAGCCCCACTGGGAAATTTACCTTGATTTCATCCCCATTCAAA
ATTCAATGTTTAAAAATGGCACTTCAAAACCATCCCCACTGGAATTTCAT
TTTAACTTTAGAACAATAGAATTTCTATCCCCCATTGGAATTTCAATAGA
AATTTTTATCCCCACCGAGGGAAAAAGTTCCACCGGGGCTGTGAGACAGG
CGTGTATTTACAGAAAAGCTTCCAGATGTTTAACAAGTTTACTAGATTGC
AAATACTCCTTCTTAGAACCTATTCTTTTTAACAAGTGGGTAGTCTAGAC
GACCAGTGACTTAAGCAATAACATAAGCAAATGCAAGAAAAAATGGAATC
AACAAATTGTATTGGCAAATCTTGTTATCATATAACAGTAAAATTACTGT
ATTACATTGATTATAGATAACTCTAGACTAACATTTAGCGTTGTTGTAAT
GGTGAACTGCATAGATCTAATAGTGATTTCTATGAATTTACTATCGCTAG
AAAGGCGATTATGTCACGTGACATGCTTCTATATAAGCTCCCCAGATGGA
TCAGTGAATCACACTTCATTAGAATTGATAGCCCACCCAATCGCGAGGAA
ATTATCAAATCAGCAGTTGACGGAATATAGTTCTTTTTGCGTCATGTATA
CAATTTATAAGCACTTATATTTACGTTTACACGCTCCGTCTTGCACCCAG
CTGGCACACAACGTTGTTTTAACGTTCAAATAACGTTATTTGGACGTTAT
GAATGTCACATGGACGTTGTTTTGACGTTGTGTGCCGTCTGGGTACNAAC
GTTATTTGGACGTTATGAATGTCACATGGACGTTGTTTTGACGTTGTGTG
CCGTCTGGGTACATTCTCTAGCTGACCCTACTACGTGAAAGAAATATATA
CTGATTAAGATGATAAATAAAGTTACTTTCGTTTGAGTTTACGAATTAGA
AAATAATACAATTTCCATTCTACCATTCTAGATGCAATGTTGTGCTTACC
ACGCGTGCAACCAAGACGTCCAGTTCGACAGACCGAAAGCACGAGTATCT
GAAAGTGTGAGACCAGCTCTTCAGTACGACTCATCAGCATCAACTCTATC
AGCAACTCTCATTTCTACCCTGATTATATTGCTACACTTGATATAGATAA
TACTGTCCGATTGCTTTAAGAGCACCTTTCTTTTGCTATCATGTAGATAA
ATAAATAAATAAATAATTTACATCGATAGCCGAGTAATTTAAGATCTTTA
ATCTTTTGATTTTTTTGTCACGGGGTCCAGGACTTACCAGCTTGGCCATC
AAGGAACTGAACGGAATACACAGGTTGCAAAATTGAAGTCTGAAGACAAA
TCACGGTTATACTCGAAAGTTTTATGTACTTGTTACATGACATTTATTTT
TGATTGGTTTGAAAATTTATTGACACTAATAAAGTTATCAGCTGAAAGTT
GTAAAGCAAGTAACATGGGAATAAAATCACGTGAACTTTTTCGAGTAATC
ACATGTTTTGACTGCACTGACATAATTTTTCAAACCGTGAATTTAGGAAT
GAGTGGAGATTTGTACCAGGAACCCCTGGATTCCCTCATTCTTCTCCCAC
ATAGAAATATTTTCAGCGTTGTTAGAGAACGGTTTTTACATGATAGCAAA
TGGGGCCCAAAGAGGACTGCATACCTAATAGCACACGAACTTTAAATTTG
TAATTAATCATTTGCATGGAAATGACATATCAGAGACTTTTATATCCATG
ATGACCGCAATGCTCTATCGGATGAACATTAAATGCATAGCGTACTGTTG
TATGGAAAAAAAACAAAGTGACTACAAATTTACACGTGTCTTTACTTAAA
ATGACTATCGACGAACACGTGAACGCTTGAACATTTGACACGTAATGGAC
AAAAGGTTGATATTTTCATTACTTTATGCCCCAATGGGGCATGGCGAGCA
TTTTATAATGGTAGAAGCAGCATCAATAGCATGGGCATATTTTTTAACTC
GAATAAATAATAGAATAGAA Coding sequence (CDS) from alignment at scaffold_94:386272..391441- >TCONS_00073544 ID=TCONS_00073544|Name=TCONS_00073544|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_94:386272..391441- (Clytia hemisphaerica)
ATGCAATGTTGTGCTTACCACGCGTGCAACCAAGACGTCCAGTTCGACAG
ACCGAAAGCACGAGTATCTGAAAGTGTGAGACCAGCTCTTCAGTACGACT
CATCAGCATCAACTCTATCAGCAACTCTCATTTCTACCCTGATTATATTG
CTACACTTGATATAGTTAAAAGTCAGTCGGCAAACTCAATGACACCAAGA
AGAGATCGGGCGCCATTGGGAGATTGCTACCAGTGTGGTCAAGGAAGCGC
ATACAACAACAAAGAAGCTTGTATCGGAAACCAACGATTACAACCATGTA
TCGGGCCAAACAAAGTTTGCAGAACACTTCACATTTATAACGAACATAAA
TTCCCGAACGGTACAACAATCATGTATAGAGAACATTATAAGAAATCGTG
CGAAACTGCTGACCCTAAGGGATGTGATTCAAAGTGTTATTTTTACAGAA
AAGAAGGAAGAGCTTGCAAGATGGAACTTCTGAGTTATTATGTTAGCATT
TTGGTCATCGCAAAATCAGATGCAATGTTGTGCTTACCACGCGTGCAACC
AAGACGTCCAGTTCGACAGACCGAAAGCACGAGTATCTGAAAGTGTGAGA
CCAGCTCTTCAGTACGACTCATCAGCATCAACTCTATCAGCAACTCTCAT
TTCTACCCTGATTATATTGCTACACTTGATATAGTTAAAAGTCAGTCGGC
AAACTCAATGACACCAAGAAGAGATCGGGCGCCATTGGGAGATTGCTACC
AGTGTGGTCAAGGAAGCGCATACAACAACAAAGAAGCTTGTATCGGAAAC
CAACGATTACAACCATGTATCGGGCCAAACAAAGTTTGCAGAACACTTCA
CATTTATAACGAACATAAATTCCCGAACGGTACAACAATCATGTATAGAG
AACATTATAAGAAATCGTGCGAAACTGCTGACCCTAAGGGATGTGATTCA
AAGTGTTATTTTTACAGAAAAGAAGGAAGAGCTTGCAAGATGGAACTTCT
GAGTTATTATGTTAGCATTTTGGTCATCGCAAAATCAGATGCAATGTTGT
GCTTACCACGCGTGCAACCAAGACGTCCAGTTCGACAGACCGAAAGCACG
AGTATCTGAAAGTGTGAGACCAGCTCTTCAGTACGACTCATCAGCATCAA
CTCTATCAGCAACTCTCATTTCTACCCTGATTATATTGCTACACTTGATA
TAGTTAAAAGTCAGTCGGCAAACTCAATGACACCAAGAAGAGATCGGGCG
CCATTGGGAGATTGCTACCAGTGTGGTCAAGGAAGCGCATACAACAACAA
AGAAGCTTGTATCGGAAACCAACGATTACAACCATGTATCGGGCCAAACA
AAGTTTGCAGAACACTTCACATTTATAACGAACATAAATTCCCGAACGGT
ACAACAATCATGTATAGAGAACATTATAAGAAATCGTGCGAAACTGCTGA
CCCTAAGGGATGTGATTCAAAGTGTTATTTTTACAGAAAAGAAGGAAGAG
CTTGCAAGATGGAACTTCTGAGTTATTATGTTAGCATTTTGGTCATCGCA
AAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073544-exon-scaffold_94-1575043694:391048..391441 | TCONS_00073544-exon-scaffold_94-1575043694:391048..391441 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1575043694:389293..389597 | TCONS_00073544-exon-scaffold_94-1575043694:389293..389597 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1575043694:386272..387310 | TCONS_00073544-exon-scaffold_94-1575043694:386272..387310 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1510915933:391048..391441 | TCONS_00073544-exon-scaffold_94-1510915933:391048..391441 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1510915933:389293..389597 | TCONS_00073544-exon-scaffold_94-1510915933:389293..389597 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1510915933:386272..387310 | TCONS_00073544-exon-scaffold_94-1510915933:386272..387310 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1491911889:391048..391441 | TCONS_00073544-exon-scaffold_94-1491911889:391048..391441 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1491911889:389293..389597 | TCONS_00073544-exon-scaffold_94-1491911889:389293..389597 | Clytia hemisphaerica | exon |
| TCONS_00073544-exon-scaffold_94-1491911889:386272..387310 | TCONS_00073544-exon-scaffold_94-1491911889:386272..387310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:386272..391441 - |
Blast
The following BLAST results are available for this feature:
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