TCONS_00073539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073539
Unique NameTCONS_00073539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ATTTATGTTTCATACTTTGTATCAAATCTGGTCATCTTACAGGTCAAGAA
ACTTGAAGATAAGAGGTTAAAATGGGTTGTTGCTGTTCAACAGTTTCAAG
TCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCGTGCAC
GATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAACTAAG
CTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGATGCAAG
TGGACCTGTCTGCCCTGATGAGACAGGGATTATTCAAGCCGCTGATTGCA
GTACATGTACCAAACAAATTATCGTAAGATGGTCACGAACACAAGGAGCT
ACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCTGGACATGCGTAT
TGGATATCGAGCTGACgttgatgattttttctttgTACATGCTCTATACG
ggttcaaaataagcaaaatgtTTGAGGAGattcaaacatttttaaacGAT
AACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATTTCATACTTTCAC
AGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAACCTATTTCCCGA
ATATGTTATATCCATGCAACGGAGCAACTGAGGTGAATATGTCATTGAAT
GATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATATGCTGCTGGTAG
TGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGTTTATCAATACAC
CTTGGTATAATACAGCAGATATTGATGTGCTTTTAACTCGCCTGGATGAA
TTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACATCAAGCTTTGTT
GTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTTCGAGTTTGGAAA
AGGATTTAGCAATTCCCGGAAATTCACATATTAGACAAtggataaaatat
aaaaaacaggaaaacaaagaagtcaatgtttttatttgtgaCTTTATGGT
CCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACGAATGAATAAAGA
ACACTGGGTGcgttttttatcaataaaaaatcaaccaatgagaagccaTA
ATCAAAATTGACTGACATGTTACATAATAGATCACTTGAAACTGCAATAA
GAATTGTAGTAAACCTTCACCAtccatccatcataaatctctttgtttga
cTTTGATGGATTTGATTAAGGAAACCTTCCAGTGTAAACGCGCCCCAAAC
GCGTCCACTGCTTTGCATTTCCTTTTATACTGTTCCGATGTTTAATTGTG
AGTTtat
Run BLAST on NCBI

protein sequence of TCONS_00073539-protein

>TCONS_00073539-protein ID=TCONS_00073539-protein|Name=TCONS_00073539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MGCCCSTVSSLDNQFESVETVGNSRARWMTNLDASFTTKPITKLAIPGSH
DCGAYFLDASGPVCPDETGIIQAADCSTCTKQIIVRWSRTQGATIIQQLN
AGVRYLDMRIGYRADVDDFFFVHALYGFKISKMFEEIQTFLNDNPKEVII
LDFQQFHTFTAETHQKFIAMIETYFPNMLYPCNGATEVNMSLNDFWQNQK
QIFARYAAGSVTDQNPQFWSNKFINTPWYNTADIDVLLTRLDEFFDLYVS
GSLNIHQALLSPQTCTIVCKSCSSLEKDLAIPGNSHIRQWIKYKKQENKE
VNVFICDFMVQSAIIPEVLKFNE
Run BLAST on NCBI

transcript from alignment at scaffold_94:153414..156082-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at scaffold_94:153414..156082- (Clytia hemisphaerica)
ATTTATGTTTCATACTTTGTATCAAATCTGGTCATCTTACAGGTCAAGAA ACTTGAAGATAAGAGGTTAAAATGGGTTGTTGCTGTTCAACAGTTTCAAG TCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCGTGCAC GATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAACTAAG CTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGATGCAAG TGGACCTGTCTGCCCTGGTAAGTAATGTCCTATTATAGACTGTGCCACAG ACCCGCTGGGACCCCAGTTCACTAGAAAATTTGGCAAAAATTTCGTCCTT GGTGGAAATATACCCCGGAATTTCAGCCCCATTGGGAAATTCACGTTCGA AATTCAGTGTTCAAACACTGTGCAATCCCCCACTGGGAACGATAGAATTT CTTTCCTCATTGAGATTTCAATAGGAATTTTTATCCCCACTGAGAAAAAA AGTTCCACCGGGGCTGAGAGAAATGGGTGTATAGACAGACAGAAGAGCTC TGTTTTATCAAAGGGATGTCTATTAATATACGATAACCGTAGTATAAATT GTAGAACATTTGCAATCCCCGGCCAGGTCATACCAAAAACTTCATACTTA GTACAAAATGGTACTTGAAGGCCCTTCTGTTTGACGACGCCCAGCAATTA AGGGAATGATCAAGGATAACTCAAGTGAAGCAATACAGGGAAAAAGAGTA GCCCCCCACCTGCTGGTTGATAGCTATCGAAAAAGAAGCCTTTGGCTTAC TTAATTTTACTCACCCCTATGATGAAAGAATAATTCGTGCACAGTTTTTT GACGGGTGTTTCTCATTGACTTTGGAGAAAATGGTCTCTATAGCAATAAG TCATATACTAATACATCTGCCAATGCAGTATATTCTTGAAAGCGATATAG GCCATTTCACAGGCGAAAAGAATATCATAAGTTATCAGACACATGGCTTT GATAAAGATTTTGATAACGGTGTAAGAGTTTCGCTCTCTTACAAACGGGG CACAATAAGTCCTGATAGCCCATGATTTATTCCGACAGAGAATGTTGGAT CCGTGAAATTCATGACGTAATGATCTATACAGAAAATACCCGAAATAGAC CGGTTGTTGTCACTAATTTTAAATTTAAACATACACATTTTTTTATAAGC ACCCGAGTTGCTAATGGTCCAGTTCTGAGACAATTAAACAATAAGCCTTA GCAACCTAGCCCTGAAACTGAGCATGCACCGGGAAAGCAATCAAAAGTAG CTAAAAAGGAGGCATTTTCAGAATACCAAATTTGAGGTATTTTGGACCTA AAATGAGATAAGAGGTCAAAGTTTTTGAAGTTGCCGGGTGTTTTTGGCGC AGCACCCATAAGCAACCTGCTGACTGAATTTCAGAAATTCCTTAGCATCT CCAGTCCTGAGACGAAAAGTCGGGGTTGCTTATGTATAGAAAATGCGTAA AAATAGGGACGAATGCCTGGGCTATTTCATATGCTTTCGTATAAAACATT ACGTCATGAAAACCATAACGTCGAAAAATTGCACGATGCTATGTACACTC TGAATAATAATTTAATTTTCAATTTGCAGATGAGACAGGGATTATTCAAG CCGCTGATTGCAGTACATGTACCAAACAAATTATCGTAAGATGGTCACGA ACACAAGGAGCTACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCT GGACATGCGTATTGGATATCGAGCTGACGTTGATGATTTTTTCTTTGTAC ATGCTCTATACGGGTTCAAAATAAGCAAAATGTTTGAGGAGATTCAAACA TTTTTAAACGATAACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATT TCATACTTTCACAGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAA CCTATTTCCCGAATATGTTATATCCATGCAACGGAGCAACTGAGGTGAAT ATGTCATTGAATGATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATA TGCTGCTGGTAGTGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGT TTATCAATACACCTTGGTATAATACAGCAGATATTGATGTGCTTTTAACT CGCCTGGATGAATTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACA TCAAGCTTTGTTGTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTT CGAGTTTGGAAAAGGATTTAGCAATTCCCGGAAATTCACATATTAGACAA TGGATAAAATATAAAAAACAGGAAAACAAAGAAGTCAATGTTTTTATTTG TGACTTTATGGTCCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACG AATGAATAAAGAACACTGGGTGCGTTTTTTATCAATAAAAAATCAACCAA TGAGAAGCCATAATCAAAATTGACTGACATGTTACATAATAGATCACTTG AAACTGCAATAAGAATTGTAGTAAACCTTCACCATCCATCCATCATAAAT CTCTTTGTTTGACTTTGATGGATTTGATTAAGGAAACCTTCCAGTGTAAA CGCGCCCCAAACGCGTCCACTGCTTTGCATTTCCTTTTATACTGTTCCGA TGTTTAATTGTGAGTTTAT

Coding sequence (CDS) from alignment at scaffold_94:153414..156082-

>TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_94:153414..156082- (Clytia hemisphaerica)
ATGAGACAGGGATTATTCAAGCCGCTGATTGCAGTACATGTACCAAACAA
ATTATCGTAAGATGGTCACGAACACAAGGAGCTACCATCATCCAACAACT
CAATGCAGGTGTTCGTTATCTGGACATGCGTATTGGATATCGAGCTGACG
TTGATGATTTTTTCTTTGTACATGCTCTATACGGGTTCAAAATAAGCAAA
ATGTTTGAGGAGATTCAAACATTTTTAAACGATAACCCAAAGGAAGTTAT
TATTCTTGATTTTCAGCAATTTCATACTTTCACAGCTGAAACTCATCAAA
AGTTTATAGCAATGATTGAAACCTATTTCCCGAATATGTTATATCCATGC
AACGGAGCAACTGAGGTGAATATGTCATTGAATGATTTCTGGCAAAATCA
GAAACAGATATTCGCCAGATATGCTGCTGGTAGTGTCACTGATCAGAATC
CACAATTTTGGTCAAACAAGTTTATCAATACACCTTGGTATAATACAGCA
GATATTGATGTGCTTTTAACTCGCCTGGATGAATTTTTTGATCTTTATGT
GAGTGGATCTTTGAATATACATCAAGCTTTGTTGTCACCTCAAACCTGCA
CCATTGTTTGCAAATCATGTTCGAGTTTGGAAAAGGATTTAGCAATTCCC
GGAAATTCACATATTAGACAATGGATAAAATATAAAAAACAGGAAAACAA
AGAAGTCAATGTTTTTATTTGTGACTTTATGGTCCAATCAGCTATCATCC
CTGAAGTATTGAAGTTCAACGAATGAATGGGTTGTTGCTGTTCAACAGTT
TCAAGTCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCG
TGCACGATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAA
CTAAGCTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGAT
GCAAGTGGACCTGTCTGCCCTGATGAGACAGGGATTATTCAAGCCGCTGA
TTGCAGTACATGTACCAAACAAATTATCGTAAGATGGTCACGAACACAAG
GAGCTACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCTGGACATG
CGTATTGGATATCGAGCTGACGTTGATGATTTTTTCTTTGTACATGCTCT
ATACGGGTTCAAAATAAGCAAAATGTTTGAGGAGATTCAAACATTTTTAA
ACGATAACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATTTCATACT
TTCACAGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAACCTATTT
CCCGAATATGTTATATCCATGCAACGGAGCAACTGAGGTGAATATGTCAT
TGAATGATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATATGCTGCT
GGTAGTGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGTTTATCAA
TACACCTTGGTATAATACAGCAGATATTGATGTGCTTTTAACTCGCCTGG
ATGAATTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACATCAAGCT
TTGTTGTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTTCGAGTTT
GGAAAAGGATTTAGCAATTCCCGGAAATTCACATATTAGACAATGGATAA
AATATAAAAAACAGGAAAACAAAGAAGTCAATGTTTTTATTTGTGACTTT
ATGGTCCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACGAATGAAT
GGGTTGTTGCTGTTCAACAGTTTCAAGTCTGGATAACCAGTTTGAATCAG
TTGAAACTGTTGGTAACAGTCGTGCACGATGGATGACTAACCTAGATGCC
AGCTTTACTACTAAACCAATAACTAAGCTAGCAATACCTGGTAGTCATGA
TTGTGGTGCTTACTTTCTTGATGCAAGTGGACCTGTCTGCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045645XLOC_045645Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073539-proteinTCONS_00073539-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073539-exon-scaffold_94-1575043694:155816..156082TCONS_00073539-exon-scaffold_94-1575043694:155816..156082Clytia hemisphaericaexon
TCONS_00073539-exon-scaffold_94-1575043694:153414..154453TCONS_00073539-exon-scaffold_94-1575043694:153414..154453Clytia hemisphaericaexon
TCONS_00073539-exon-scaffold_94-1510915933:155816..156082TCONS_00073539-exon-scaffold_94-1510915933:155816..156082Clytia hemisphaericaexon
TCONS_00073539-exon-scaffold_94-1510915933:153414..154453TCONS_00073539-exon-scaffold_94-1510915933:153414..154453Clytia hemisphaericaexon
TCONS_00073539-exon-scaffold_94-1491911889:155816..156082TCONS_00073539-exon-scaffold_94-1491911889:155816..156082Clytia hemisphaericaexon
TCONS_00073539-exon-scaffold_94-1491911889:153414..154453TCONS_00073539-exon-scaffold_94-1491911889:153414..154453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:153414..156082 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120267 0.299255 0 0.143169 0.533149 0.241027 0.290788 0.446512 1.82089 0.776557 0.851126 2.36315 7.77586 6.1392 4.07747 3.61195 1.06726 1.31913 8.71468 7.25069 1.34333 1.18856 0.296379 0.370496 0 0 0.221526 0 0.107589 0.182693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017946PLC-like_Pdiesterase_TIM-brl
Vocabulary: Molecular Function
TermDefinition
GO:0008081phosphoric diester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
molecular_function GO:0008081 phosphoric diester hydrolase activity
Blast
BLAST of TCONS_00073539 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 3.245e-48
Identity = 96/302 (31.79%), Postives = 152/302 (50.33%), Query Frame = 3
Query:  147 ARWMTNLDASFTTKPITKLAIPGSHDCGAYFLDASGPVCPDETGIIQ--AADCSTCTKQIIVRWSRTQGATIIQQLNAGVRYLDMRIGYRA-DVD-DFFFVHALYGFKISKMFEEIQTFLNDNPKEVIILDFQQFHTFTAETHQKFIAMIETYFPNMLYPCNGATEVNMSLNDFWQNQKQIFARYAAGSVTDQNPQFWSNKFINTPWYNTADIDVLLTRLD-EFFDLYVSGSLNIHQALLSPQTCTIVCKSCSSLEKDLAIPGNSHIRQWIKYKKQENKEVNVFICDFMVQSAIIPEVLKFN 1037
            A WM  L  S  + P+T LAIPGSHD  ++++D + PV P++   +Q   +   T  K+++ +W  TQ      QL AG+RY D+RI  +  D D + +F H L+  K+++  EEI  FL D+ KEV+ LDF  F+      H+K + M++  + N + P   A EV  SL   W+   Q+   Y +  V  + P  W  + +  PW NT D + L+  L     +    GS  I Q +L+P+  T+V    S L + +       + QW++ +K     +N+   DF+     I  V+K N
Sbjct:   13 ADWMATLPESMHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEV--SLKYLWEKDYQVLVFYHS-PVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLN 311          
The following BLAST results are available for this feature:
BLAST of TCONS_00073539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLCX33.245e-4831.79PI-PLC X domain-containing protein 3 OS=Homo sapie... [more]
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