TCONS_00073538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073538
Unique NameTCONS_00073538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073538 ID=TCONS_00073538|Name=TCONS_00073538|organism=Clytia hemisphaerica|type=transcript|length=322bp
CAGGTTGATGTCAAGATACTTCCACCGCAAAAGTGTTGGTTATAAATTTG
CAAAGAAACTTGCCACGGCCAAGCACCAGCTCTGGCTGTGGTCCCTCCAA
CAATTCGACTTTGGGCCGCCCGTGAAACGCCACATTTTCCTTCCGATCCA
CCGGTGGATCCGCCTgaaccaccaccaccaccagaGCCTCCGCCTGAACC
ACCACCAGAGCCTCCACATCTGCCACAAGACTTCTTGCAATTTTGGATGA
CGTATTCATGTGTATTACACAAATCTCTTCGGTCGTCCTTCCATTTAGGA
CACTTTACGTTTTTGTCAGCGC
Run BLAST on NCBI

transcript from alignment at scaffold_94:144750..146358-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073538 ID=TCONS_00073538|Name=TCONS_00073538|organism=Clytia hemisphaerica|type=transcript|length=1609bp|location=Sequence derived from alignment at scaffold_94:144750..146358- (Clytia hemisphaerica)
CAGGTTGATGTCAAGATACTTCCACCGCAAAAGTGTTGGTTATAAATTTG
CAAAGAAACTTGCCACGGCCAAGCACCAGCTCTGGCTGTGGTCCCTCCAA
CAATTCGACTTTGGGCCGCCCGTGAAACGCCACATTTTCCTTCCGATCCA
CCGGTGGATCCGCCTGAACCACCACCACCACCAGAGCCTCCGCCTGAACC
ACCACCAGAGCCTCCACATCTGCCACAAGACTTCTTGCAATTTTGGATGA
CGTATTCATGTGTATTACACAAATCTCTTCGGTCGTCCTTCCATTTAGGA
CATTTTGCGTTTTTGTCAGCGCAGGTAGCTTAAGTTATATGAAAAAGCAG
TTTAAGAAGCATAGACTGTCAAAAAGATTTCAAAAATGTTCGAAAATGAA
AGTTGAAGACGAAAAAAAATAGGTTTTTATCCTTCGACGCTAGGAACTAA
TTTTTGCTAAACAGACGTATTATACACGTTTTTTTTAAGAAACTAGTTTT
ACCAAGCAGTCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAAT
GTTTTTTACATGTTTCTAAACTTTTTTGACATAATCAGCCTACTTTTCAT
GCAAAGATTGGAAGGTTCTAAAAAAACCGTTTTAAAAATGTCATTTTCTC
ATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCTTAGTTTTTAGGCATTC
TGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAAAAACGTGT
AAAGCCTCCTGATTTCAGCTAGATTTCAGCTAGATAACATAAACTTATTG
CATCGGAAGTTACGTTCTTATTTAGAATGTGGCCCGTAGATGCAAACATA
GCAACAACAAAAAAGTCTTTCACTCAGATGAAATTGCTTCTAAAGGCTTT
ATAGCTGATATCCAGAGGCTTAAGAGTACCAGTTTAGCAAAAATAAGGTT
CCTGGAATTAGAGGATAAAAAGTCCAATCTTTGAAGTTATTTGCCTAAAA
AATTAAAATGCTTTTTTGATTATCTTTTCAGCGGTTTAGAATAATGTTAG
AGTTGAAAAATAAGTCAAAAAATGTCAAAGAAAAAAAGAAGTGCAAAACN
TTTTGAAGGAATTCTTTAATCTTTATAAATTTGGTATCATTGGTAAGATA
TTAGTGAGTGGGACAATTTGAAATAAAAAAATCTTTAAAAAATTATATTT
TTTAAAAACTAGAGTTCCGTTGCTCTCACAAAAAAATAACATTGCAGGGT
CTTCGTCAAAAATTGACGTCATTTTAGTCCTTGTGTCGTGAACTATTAAA
GTGAACTTGTTCACGTGACGGCATTTCNAAATTTCGCAAGATCCTTAATT
TGAAAGCCAAGAAATTTAATTTATATTTAGAACACATATGTCAAAAACAA
CAGGATTTCAAATTATCACATCTTGTAAAAATGCTTTAAAGTATTTGTTA
TCTAGTTACTCCCCTCCTCCTTTGTTAACTTTAACAACATACCTGAGCCT
CCACATCTGCCACAAGACTTCTTGCAATTTTGGATGACGTATTCATGTGT
ATTACACAAATCTCTTTGGTCGTCCTTCCATTTAGGACACTTTACGTTTT
TGTCAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045644XLOC_045644Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073538-exon-scaffold_94-1575043694:146058..146358TCONS_00073538-exon-scaffold_94-1575043694:146058..146358Clytia hemisphaericaexon
TCONS_00073538-exon-scaffold_94-1575043694:144750..144770TCONS_00073538-exon-scaffold_94-1575043694:144750..144770Clytia hemisphaericaexon
TCONS_00073538-exon-scaffold_94-1510915933:146058..146358TCONS_00073538-exon-scaffold_94-1510915933:146058..146358Clytia hemisphaericaexon
TCONS_00073538-exon-scaffold_94-1510915933:144750..144770TCONS_00073538-exon-scaffold_94-1510915933:144750..144770Clytia hemisphaericaexon
TCONS_00073538-exon-scaffold_94-1491911889:146058..146358TCONS_00073538-exon-scaffold_94-1491911889:146058..146358Clytia hemisphaericaexon
TCONS_00073538-exon-scaffold_94-1491911889:144750..144770TCONS_00073538-exon-scaffold_94-1491911889:144750..144770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:144750..146358 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189665	0	0	0	1.04278	0	0	0.197487	0.636551	0	0	7.60349	3.1313	6.85954	0	0	0.340206	0.542835	3.49284	9.21425	0.267306	0	0	0	0	0	0	0.0894361	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
IPR001254Trypsin_dom
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top