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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073533 ID=TCONS_00073533|Name=TCONS_00073533|organism=Clytia hemisphaerica|type=transcript|length=717bp
TGCTGATGTTAGAAGAAACTGTGAAATACAATTGACAGTACGGTGAAATT
CTACTAAATCAGTGAAGTTTTAATGTCTTAAAAAATAAGCTGAAGCTTGA
AAAATATTCAGCTTTTTAGGGAATTGAAATTGACTATCATAAGTATTTGG
CGTCAAAATTGACGTTAACTAAAATAGTTTTTTTGGAAAAAGCATGAAGA
TATCTTGGCAATTAGTTTCATTCTTTTGGTTTGAGTTTCACAAAACTGcC
TGTTTGGAGCCTTACAAACGGTTATCCTGTTGGACGTGTAAAAAAGGTAC
AGGCGATCAATGTACAGAACGGGTTAACACAGTGTGCGAGGGACGTGAAA
ATGTTTGTGTCACTTCCAGAATCACCGAGCAAACAAAGAACTGGAAAGGC
GAGATGTTGATCAAAGAAAGGATCGAAAAGAAATGCCACTTTATTGCTCC
CTATCAAGAATGCGAATGTATCGTAGGTGGTTTGTTGGGAGAAACATGCG
AGTTACTGGATTGTTGTGGTCAAGACCTTTGTAACTGGAGGAACAGTAAA
CAAGAAAAAGCAAGACTGTGTTCCTCTTCTTCATCTATCAACGTAAAACC
ATTTTGTGGACAATTTGTCTATGTGGTTCTTATAGGAATTTTAATGCTGT
TTTCTCAGTTTGTTTTGTATTGAGATTTCGCTTTTTAACAATTTGTAAAT
ATCTCTTTGAAATTATC Run BLAST on NCBI protein sequence of TCONS_00073533-protein >TCONS_00073533-protein ID=TCONS_00073533-protein|Name=TCONS_00073533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MKISWQLVSFFWFEFHKTACLEPYKRLSCWTCKKGTGDQCTERVNTVCEG
RENVCVTSRITEQTKNWKGEMLIKERIEKKCHFIAPYQECECIVGGLLGE
TCELLDCCGQDLCNWRNSKQEKARLCSSSSSINVKPFCGQFVYVVLIGIL
MLFSQFVLY Run BLAST on NCBI transcript from alignment at scaffold_94:392473..395232+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073533 ID=TCONS_00073533|Name=TCONS_00073533|organism=Clytia hemisphaerica|type=transcript|length=2760bp|location=Sequence derived from alignment at scaffold_94:392473..395232+ (Clytia hemisphaerica)
TGCTGATGTTAGAAGAAACTGTGAAATACAATTGACAGTACGGTGAAATT
CTACTAAATCAGTGAAGTTTTAATGTCTTAAAAAATAAGCTGAAGCTTGA
AAAATATTCAGCTTTTTAGGGAATTGAAATTGACTATCATAAGTATTTGG
CGTCAAAATTGACGTTAACTAAAATAGTTTTTTTGGAAAAAGCATGAAGA
TATCTTGGCAATTAGTTTCATTCTTTTGGTTTGAGTTTCACAAAACTGGT
AGGTTGGATGTTCTAAACACACCCCTCTGACAGACCGGGTAGGATTTTTT
CCATCAATGGGgatgaaaataacggactgaaactcgatgggaatTGATAT
TCCAACGCTTTTTATGGCTGagcatttcaattattttgttcttttgtcaa
aaatttagtggggatgggaaaaatagcataatattttgcaatgggaattg
gtttatttgattatcatCAGTAGGGACGAAAAATTGAAGGACAATTTCCT
agcggggacgatattttggccaatttttccagtgggaagggttcccagtg
ggtttgtgagaaaggggtgttctcTAACGAACCAATTAcgatatttgaaa
atatttcacatAGGATCTCCAAAAAGATcatgtcaaaaatttgaaaattt
taacatttcggtacattttctgtaaaaatactTATCTAACCATGAGCTCC
ATTTTCAACCAAGTTATAGCTTTTTGGCATCTAAAATAAATCTAACATAA
TTTGAAAACTCGAATGGCGCAAGTAGCTCTTAGGGGGGGGCTTAGGCAAA
ATTAAGTACAGGGGATATGCCTggtaagggtcccttttttaggtaATGAA
GATATCTGAAAGGGTCCGAAATTAACTATTTTTTAAGAAAGGTATACCTG
ACAGGGTCGACtaattttgtttatattattcagggtgaaaattatcataa
agaattttaattttttgtccacttttagtcattttatCATCGATTTTTTG
TGTTGAGGGAATTCCAAATTTACCAAAGATTGCTATCTGATAGGGTCCCC
CTTTCAAACTCCAGGGACACGCCCCGTCGTCCGTTAAGATATTTGCCCTC
TCCCCCAAGGAAGTAGCTGTAGACACATCTGCCTCACAGCTCTGATGAAA
ATCTTTCttacagcggggataaaaaactcgattgaaatctcaatggggat
aaaaattctattgttccaaggttaaaaaatctagtggggatggttttgga
gtacaatctCTAATGCTAGTGCAatctgaaattctagggtatttttccca
ccggggactaaattttttccaaattttccattTGGGATGGggccccagcg
ggtctgtgacacatatGGGTGTCTTTAGGTACAAGACTACACAATTTGCT
GATTGTTATCATCCAACATAGTTTGTCATTTTTGTTATTTAATAATGCTG
CATTTCTAATATCTGATTTATtagaaaaatagacaaaaatacttgaaaag
tggtgaaaataagagcatctgaaggcttcaaaaactcttataaaaaataa
cgtgtagtacagtttgatatttttctttcagcCTGTTTGGAGCCTTACAA
ACGGTTATCCTGTTGGACGTGTAAAAAAGGTACAGGCGATCAATGTACAG
AACGGGTTAACACAGTGTGCGAGGGACGTGAAAATGTTTGTGTCACTTCC
AGAATCACCGAGCAAACAAAGAACTGGAAAGGCGAGATGTTGATCAAAGA
AAGGATCGAAAAGAAATGCCACTTTATTGCTCCCTATCAAGAATGCGAAT
GTATCGTAGGTGGTTTGTTGGGAGAAACATGCGAGGTGATGTttgattta
tttaaaattttctcttaacagtgaaaaattaattttgaaaacctttaaaa
gtCATGTGATGAAAAtctgtaataaaaaaatcattcaactttcaaagaaa
atcaacaaaatagtCGAATATTGAATATCAGTCCTACAAAGTCTGTTAGG
TTAGATTTTCCTCAATTAAGCTCCTGTCTCAGTATCCCAATGGGGATTTC
GTTTCACTCGGTGGGATAAAaatgttttatcaaaattcCAATGGGGTGAA
CAATCCATCGTTTCCAGCTCAAAATGCCAGTGGGAATTGTTTCTTATGAT
TCCCAATGTAGAATAGGGCACTCTCCCATTGGTATTTCAGGGGACGGTGG
TCCACCGGATCTGAGACAGGGAATTTAAATATATTACATAAACCTACTCT
TCGGGGTATGAATACTGCTcctgttttgaatattgaatttctccGCATAC
ATCACAAGcacactgaggttttaatggaacaatagagagtttcgacaAAC
CTAAGCTGTGTTTTAAatgttcttttatttgaaatcactatcgataaaca
tcttttgtaaaagttttctattatgtttaaacctattactaattcccggt
gggggtcactggTGGCTGCCTCCTAGAGACCAAGAGTAAgtcctaaaagc
ctggagctgtctattgtgtagactaggaATTTCTTTTCGTTTTAGTTACT
GGATTGTTGTGGTCAAGACCTTTGTAACTGGAGGAACAGTAAACAAGAAA
AAGCAAGACTGTGTTCCTCTTCTTCATCTATCAACGTAAAACCATTTTGT
GGACAATTTGTCTATGTGGTTCTTATAGGAATTTTAATGCTGTTTTCTCA
GTTTGTTTTGTATTGAGATTTCGCTTTTTAACAATTTGTAAATATCTCTT
TGAAATTATC Coding sequence (CDS) from alignment at scaffold_94:392473..395232+ >TCONS_00073533 ID=TCONS_00073533|Name=TCONS_00073533|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_94:392473..395232+ (Clytia hemisphaerica)
ATGAAGATATCTTGGCAATTAGTTTCATTCTTTTGGTTTGAGTTTCACAA
AACTGcCTGTTTGGAGCCTTACAAACGGTTATCCTGTTGGACGTGTAAAA
AAGGTACAGGCGATCAATGTACAGAACGGGTTAACACAGTGTGCGAGGGA
CGTGAAAATGTTTGTGTCACTTCCAGAATCACCGAGCAAACAAAGAACTG
GAAAGGCGAGATGTTGATCAAAGAAAGGATCGAAAAGAAATGCCACTTTA
TTGCTCCCTATCAAGAATGCGAATGTATCGTAGGTGGTTTGTTGGGAGAA
ACATGCGAGTTACTGGATTGTTGTGGTCAAGACCTTTGTAACTGGAGGAA
CAGTAAACAAGAAAAAGCAAGACTGTGTTCCTCTTCTTCATCTATCAACG
TAAAACCATTTTGTGGACAATTTGTCTATGTGGTTCTTATAGGAATTTTA
ATGCTGTTTTCTCAGTTTGTTTTGTATTGAATGAAGATATCTTGGCAATT
AGTTTCATTCTTTTGGTTTGAGTTTCACAAAACTGcCTGTTTGGAGCCTT
ACAAACGGTTATCCTGTTGGACGTGTAAAAAAGGTACAGGCGATCAATGT
ACAGAACGGGTTAACACAGTGTGCGAGGGACGTGAAAATGTTTGTGTCAC
TTCCAGAATCACCGAGCAAACAAAGAACTGGAAAGGCGAGATGTTGATCA
AAGAAAGGATCGAAAAGAAATGCCACTTTATTGCTCCCTATCAAGAATGC
GAATGTATCGTAGGTGGTTTGTTGGGAGAAACATGCGAGTTACTGGATTG
TTGTGGTCAAGACCTTTGTAACTGGAGGAACAGTAAACAAGAAAAAGCAA
GACTGTGTTCCTCTTCTTCATCTATCAACGTAAAACCATTTTGTGGACAA
TTTGTCTATGTGGTTCTTATAGGAATTTTAATGCTGTTTTCTCAGTTTGT
TTTGTATTGAATGAAGATATCTTGGCAATTAGTTTCATTCTTTTGGTTTG
AGTTTCACAAAACTGcCTGTTTGGAGCCTTACAAACGGTTATCCTGTTGG
ACGTGTAAAAAAGGTACAGGCGATCAATGTACAGAACGGGTTAACACAGT
GTGCGAGGGACGTGAAAATGTTTGTGTCACTTCCAGAATCACCGAGCAAA
CAAAGAACTGGAAAGGCGAGATGTTGATCAAAGAAAGGATCGAAAAGAAA
TGCCACTTTATTGCTCCCTATCAAGAATGCGAATGTATCGTAGGTGGTTT
GTTGGGAGAAACATGCGAGTTACTGGATTGTTGTGGTCAAGACCTTTGTA
ACTGGAGGAACAGTAAACAAGAAAAAGCAAGACTGTGTTCCTCTTCTTCA
TCTATCAACGTAAAACCATTTTGTGGACAATTTGTCTATGTGGTTCTTAT
AGGAATTTTAATGCTGTTTTCTCAGTTTGTTTTGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073533-exon-scaffold_94-1491911889:392473..392720 | TCONS_00073533-exon-scaffold_94-1491911889:392473..392720 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1510915933:392473..392720 | TCONS_00073533-exon-scaffold_94-1510915933:392473..392720 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1575043694:392473..392720 | TCONS_00073533-exon-scaffold_94-1575043694:392473..392720 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1491911889:394054..394307 | TCONS_00073533-exon-scaffold_94-1491911889:394054..394307 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1510915933:394054..394307 | TCONS_00073533-exon-scaffold_94-1510915933:394054..394307 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1575043694:394054..394307 | TCONS_00073533-exon-scaffold_94-1575043694:394054..394307 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1491911889:395018..395232 | TCONS_00073533-exon-scaffold_94-1491911889:395018..395232 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1510915933:395018..395232 | TCONS_00073533-exon-scaffold_94-1510915933:395018..395232 | Clytia hemisphaerica | exon |
| TCONS_00073533-exon-scaffold_94-1575043694:395018..395232 | TCONS_00073533-exon-scaffold_94-1575043694:395018..395232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:392473..395232 + |
Blast
The following BLAST results are available for this feature:
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