TCONS_00073532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073532
Unique NameTCONS_00073532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073532 ID=TCONS_00073532|Name=TCONS_00073532|organism=Clytia hemisphaerica|type=transcript|length=1314bp
aaacatttttgaagtcttagACGATGTTATGATTAGCATTACGATTATTA
TACAACGATTAATATATTGATGCATCGAATCTATCCATTGCTTTGGGGAT
TATCATTAAAAGTCTTAGCACCCATCTCATTGAATTATTCTTGAAACATA
ACCGTCGAGAAGAATGATGTACAACATTTATATTCAACAATCCTTAAGGG
AGCTTACATTCTCCACTTACCCCTTTTATATGTTCAACAGACTCGCGAGC
GATGAAGAAGAATATGATGACGTCAACGACGATGACGTCATGGTAGGTTG
TCTTGGTTTCGTTGCCGGTTCATCGGACACGCCACACCTCATGTTATCAT
CACCTAATAAACACAACAAAAACACAAACTCGAACTTGCATTCAGCACAA
TCAAACTCTTCTTCAAAGAACGCCAAATCGTCCGCACAACACGTATCATC
TAAGCAAAGGAGGTCACGTCAAGATGTAGCTTCTAAAAACGATATTACAA
AAGTCACACCAGGTGCCTACATCACAGACCAAGAAGCGAGAAACGCTTAC
AAAGAACAAATGAGAGCCAAAGAGTTGATGAGAGAGACTGAAAAACTTGA
CGTCAATAAATTACGTAATCAGTACGGGCGTATGAGGCGGTTACAACAAA
AAGCAATGCTTGTTTTCAACGCCGATGACTTTAAAGATGAATCTTATAAA
GTGAAAAACCCGCCCTCCGCCATCAATCATTTATTCGTTGATGTTAATAA
CGTGGTCGCTCCGCCTAGAGCTCGATATCGAAAGCCGAGTAATTTTCCCG
CCCTCAAAACGCTTGGGAAGGGTGGACCACCCGCACCTCCCCGTCCAATC
AAAGAATCACCGAAAGTAGTTCACGAGTCGACCAGTTCCAAAGGTGAGGG
TGAAACaaaaacttctttaaaaaaacaggACAGTTTCTCTATCACCAACC
CTTACGTCATGTTAGAAGTTCAAGGGAATGGGGACGAGAGTGACGCAATC
AACGACCCAGACGCGCATGCGCACATCATGAAAAAGACAGCACCGACCAA
TAAGATTCGGTCTGCaccaaccaatcagctgtcagCTCCCACTAAAAAAG
ACTCGAATCTTTCAAGTGAGCTTAACTCTGTTTCACCTTTGTATAAAGTG
GACAAATCGGCTTTGTATCCGACTAATTTCAAACCTTTCCCGAAACGGAA
TATCGGGAAAAGATCAAATTTTAGCAGCAAAACGTAATAATGATTAACAG
GTGGAATGTACAGGGACGGCGGTTAGTATTTTATACAAATTCTATTTTTA
TGAGGGGAGGGTGC
Run BLAST on NCBI

transcript from alignment at scaffold_94:344920..348752+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073532 ID=TCONS_00073532|Name=TCONS_00073532|organism=Clytia hemisphaerica|type=transcript|length=3833bp|location=Sequence derived from alignment at scaffold_94:344920..348752+ (Clytia hemisphaerica)
aaacatttttgaagtcttagACGATGTTATGATTAGCATTACGATTATTA TACAACGATTAATATATTGATGCATCGAATCTATCCATTGCTTTGGGGAT TATCATTAAAAGTCTTAGCACCCATCTCATTGAATTATTCTTGAAACATA ACCGTCGAGAAGAATGATGTACAACATTTATATTCAACAATCCTTAAGGG AGCTTACATTCTCCACTTACCCCTTTTATATGTTCAACAGACTCGGTAAG AAGAAATGATATGTACGGTCTTTTTTATACCTCTAGAAGGTTTTGCGTTT TTTTTTGTCTGTctttctgtctgtctgtctgtttgtCTACTACTGCAGTT GGACTTCGTTTACTATTTTAGGcgttattttgatgttttttcttaTTGTA GCTGATTGTAGTAGTAGAGATTTTCTAAGATTTTTCCATTTTATTAAAGG TTGTTTGAATTGAAACTTTACTAAACTTAACATATGGGAACAAATgatat ttgcaatttttcgaatGATCGCCAGTTTAATGATTACAAATGATTACAAA TGATATATAATGAAAACGATTTGCGATATTCATCTTATAGATAGCAACCA ACTAACCAACTGTGCTTTCGGAGGCTAGCTTCTTTTACTTGACAATCAAA GTTCATTTTGTCATCTTTTCctgtttttccttttctttattttcttattt ttccttaTATAAGCTCCCTGCTGTCAATCCACTTAAAAAGCCTTTGCTGA GTACCTTTCACTTAGTTTTTTGAAGAAGTATAACCTTATGGTGACAAGTT AATTCCTTGGCCTTCCAGATTTGGAACCTCGTGGCTAATTCCCTGGCAAT ATTTACACGGAAAGTCTCGACttcaaaaagttatatttcGCCCTTTTTTG GGTAATATAAAGTCACACCCAAACCCTCACATGACCAAATCTACTCAGAC CTTtttttgaatagaccttttgaAGGAAGAGAAAGATTACATGGTTTTTT ATAGGAGCAAAGTATATACGAGGCGGAAAAGATGAGTAATACTCAACATt tagaaaacatttaaaactctaaaacgtgaaatttcctaggaaattctACT AAGAatactgaaaataagaacaacttaagaacatttttaatatTAAAACC CAAAAGTTAAGCACATTTTGTCTTCAAAACGTTTGgacgttctaataaaa gaaaacgtATTATGGTTGCTTAAAAATAATTTCACCAGCCGTTTTAGTGT TCCCTACTGGGTCTATTTTCTTAATATAGAAAACaaaatgagaaataaat ggaaatATTTTGGTGAGATTATCATCACAAAGCATTCATCACttcatcaa ttttattgaagatTATAGAATTATAGATTATTGGTGTGAATTAAAGTCAA GTTGGACCACAATATGCTTAGGATTTTGTTAACAAGAGTATGTATGATGT ACGATAGTCGTGTTTAAGTTAAGTTGAACCTGTCCAGATCAATTCGACgg atgggcttttccagaaaaaactgtataccccctgttgaggaggtccattt ttGTTGTTCCAAGGGATTAAGGTTtaatatgtggcggaattccatagtga gatacaaaaatctgtcaaaaataagtgGAATTCCATGGAGGTAGCTTTTT CAATCATACTAAagttcagaattccagagggtttTAAAcgtgaaattgcc tggaattccagggggttacatCATTTCCAGCCACATAGGGATGGCCCTCC TCAACAGgaggtatacggtttttttctggaaaagcccaatgtccAGGCTG AGGGAAAATTATGGGAATGAGTAAACAAACATTCTTATTTTACACCTCTC TCTTTGTTTCTATTCACAGCGAGCGATGAAGAAGAATATGATGACGTCAA CGACGATGACGTCATGGTAGGTTGTCTTGGTTTCGTTGCCGGTTCATCGG ACACGCCACACCTCATGTTATCATCACCTAATAAACACAACAAAAACACA AACTCGAACTTGCATTCAGCACAATCAAACTCTTCTTCAAAGAACGCCAA ATCGTCCGCACAACACGTATCATCTAAGCAAAGGAGGTCACGTCAAGATG TAGCTTCTAAAAACGATATTACAAAAGTCACACCAGGTATGTTATGCTCT TGTTGTTTTGTTTCTAGACATAAAAGTTACCCCTGATAGTTTAACCCACC AGGATTTTAACCTAGGAAAATCAACCCCCTTGCCTCATGGAGTTTTGCTT TGGTAGAATGACattgaccttttcataaattgcgTCACGAACATcccttg cctcgtattcaaacaattaccatggtaattatgtctcttgagacataaaa tgatttttttatgaatagaaggtatagttttgataaaatccgctGTGAAt taatcaccatgacaataGTTTCAAAACGAGGTGAGTGATGTTTGTAAcct aatttatgaaaaggtctgtTAATGAATGACATTGTTACAGTTTATATGAA CTAATATTATCTTATAATAATTATCGTCTTATCATATAgcacccatatta ctgtattatcatatagcacccatattactgtattttCATATAgcacccat attactgtattatcgTATAACACTCATATTACGGTATAACacggattata aacgactccagtcatTTGATTTGTGAACGCTAATCAGGTTAGCACACTCT GGTCGTTTCAAAGTCAATGCGACGTCATATTTGATTATTGTACACGGACT TTGTTTTTACGTTTCGTAACCGTTGAGAATATCCTACCGGGTGTCCTAGA AAAAATTTCCCctctttgaattgaattttctcgagttctataaACTGTTA TAGAATCaatctttttgcattggaaagaggaagggtgatgaacttaaatt ttgaggggtagtttgtcaaatttggtcacCTAGATCGAAAGTTATATGTA ggctaaatgctaaaacattacttttcaaaaaaaagacaCCCGGTACCGGT TAGAATAATATCTGTTGATCCATTCTTTCAGGTGCCTACATCACAGACCA AGAAGCGAGAAACGCTTACAAAGAACAAATGAGAGCCAAAGAGTTGATGA GAGAGACTGAAAAACTTGACGTCAATAAATTACGTAATCAGTACGGGCGT ATGAGGCGGTTACAACAAAAAGCAATGCTTGTTTTCAACGCCGATGACTT TAAAGATGAATCTTATAAAGTGAAAAACCCGCCCTCCGCCATCAATCATT TATTCGTTGATGTTAATAACGTGGTCGCTCCGCCTAGAGCTCGATATCGA AAGCCGAGTAATTTTCCCGCCCTCAAAACGCTTGGGAAGGGTGGACCACC CGCACCTCCCCGTCCAATCAAAGAATCACCGAAAGTAGTTCACGAGTCGA CCAGTTCCAAAGGTGAGGGTGAAACaaaaacttctttaaaaaaacaggAC AGTTTCTCTATCACCAACCCTTACGTCATGTTAGAAGTTCAAGGGAATGG GGACGAGAGTGACGCAATCAACGACCCAGACGCGCATGCGCACATCATGA AAAAGACAGCACCGACCAATAAGATTCGGTCTGCaccaaccaatcagctg tcagCTCCCACTAAAAAAGACTCGAATCTTTCAAGTGAGCTTAACTCTGT TTCACCTTTGTATAAAGTGGACAAATCGGCTTTGTATCCGACTAATTTCA AACCTTTCCCGAAACGGAATATCGGGAAAAGATCAAATTTTAGCAGCAAA ACGTAATAATGATTAACAGGTGGAATGTACAGGGACGGCGGTTAGTATTT TATACAAATTCTATTTTTATGAGGGGAGGGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045639XLOC_045639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073532-exon-scaffold_94-1491911889:344920..345164TCONS_00073532-exon-scaffold_94-1491911889:344920..345164Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1510915933:344920..345164TCONS_00073532-exon-scaffold_94-1510915933:344920..345164Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1575043694:344920..345164TCONS_00073532-exon-scaffold_94-1575043694:344920..345164Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1491911889:346789..347055TCONS_00073532-exon-scaffold_94-1491911889:346789..347055Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1510915933:346789..347055TCONS_00073532-exon-scaffold_94-1510915933:346789..347055Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1575043694:346789..347055TCONS_00073532-exon-scaffold_94-1575043694:346789..347055Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1491911889:347951..348752TCONS_00073532-exon-scaffold_94-1491911889:347951..348752Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1510915933:347951..348752TCONS_00073532-exon-scaffold_94-1510915933:347951..348752Clytia hemisphaericaexon
TCONS_00073532-exon-scaffold_94-1575043694:347951..348752TCONS_00073532-exon-scaffold_94-1575043694:347951..348752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:344920..348752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.447343 0.618085 0 0.591327 1.77056 0 2.35997 5.14048 0.73575 0.760473 1.38245 1.23131 1.59546 0.707192 2.1985 2.17624 1.72209 0.419341 2.45257 2.82431 3.06436 3.12548 0.725748 0 3.67797 5.27641 0.310596 0.641406 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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