|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073532 ID=TCONS_00073532|Name=TCONS_00073532|organism=Clytia hemisphaerica|type=transcript|length=1314bp
aaacatttttgaagtcttagACGATGTTATGATTAGCATTACGATTATTA
TACAACGATTAATATATTGATGCATCGAATCTATCCATTGCTTTGGGGAT
TATCATTAAAAGTCTTAGCACCCATCTCATTGAATTATTCTTGAAACATA
ACCGTCGAGAAGAATGATGTACAACATTTATATTCAACAATCCTTAAGGG
AGCTTACATTCTCCACTTACCCCTTTTATATGTTCAACAGACTCGCGAGC
GATGAAGAAGAATATGATGACGTCAACGACGATGACGTCATGGTAGGTTG
TCTTGGTTTCGTTGCCGGTTCATCGGACACGCCACACCTCATGTTATCAT
CACCTAATAAACACAACAAAAACACAAACTCGAACTTGCATTCAGCACAA
TCAAACTCTTCTTCAAAGAACGCCAAATCGTCCGCACAACACGTATCATC
TAAGCAAAGGAGGTCACGTCAAGATGTAGCTTCTAAAAACGATATTACAA
AAGTCACACCAGGTGCCTACATCACAGACCAAGAAGCGAGAAACGCTTAC
AAAGAACAAATGAGAGCCAAAGAGTTGATGAGAGAGACTGAAAAACTTGA
CGTCAATAAATTACGTAATCAGTACGGGCGTATGAGGCGGTTACAACAAA
AAGCAATGCTTGTTTTCAACGCCGATGACTTTAAAGATGAATCTTATAAA
GTGAAAAACCCGCCCTCCGCCATCAATCATTTATTCGTTGATGTTAATAA
CGTGGTCGCTCCGCCTAGAGCTCGATATCGAAAGCCGAGTAATTTTCCCG
CCCTCAAAACGCTTGGGAAGGGTGGACCACCCGCACCTCCCCGTCCAATC
AAAGAATCACCGAAAGTAGTTCACGAGTCGACCAGTTCCAAAGGTGAGGG
TGAAACaaaaacttctttaaaaaaacaggACAGTTTCTCTATCACCAACC
CTTACGTCATGTTAGAAGTTCAAGGGAATGGGGACGAGAGTGACGCAATC
AACGACCCAGACGCGCATGCGCACATCATGAAAAAGACAGCACCGACCAA
TAAGATTCGGTCTGCaccaaccaatcagctgtcagCTCCCACTAAAAAAG
ACTCGAATCTTTCAAGTGAGCTTAACTCTGTTTCACCTTTGTATAAAGTG
GACAAATCGGCTTTGTATCCGACTAATTTCAAACCTTTCCCGAAACGGAA
TATCGGGAAAAGATCAAATTTTAGCAGCAAAACGTAATAATGATTAACAG
GTGGAATGTACAGGGACGGCGGTTAGTATTTTATACAAATTCTATTTTTA
TGAGGGGAGGGTGC Run BLAST on NCBI transcript from alignment at scaffold_94:344920..348752+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073532 ID=TCONS_00073532|Name=TCONS_00073532|organism=Clytia hemisphaerica|type=transcript|length=3833bp|location=Sequence derived from alignment at scaffold_94:344920..348752+ (Clytia hemisphaerica)
aaacatttttgaagtcttagACGATGTTATGATTAGCATTACGATTATTA
TACAACGATTAATATATTGATGCATCGAATCTATCCATTGCTTTGGGGAT
TATCATTAAAAGTCTTAGCACCCATCTCATTGAATTATTCTTGAAACATA
ACCGTCGAGAAGAATGATGTACAACATTTATATTCAACAATCCTTAAGGG
AGCTTACATTCTCCACTTACCCCTTTTATATGTTCAACAGACTCGGTAAG
AAGAAATGATATGTACGGTCTTTTTTATACCTCTAGAAGGTTTTGCGTTT
TTTTTTGTCTGTctttctgtctgtctgtctgtttgtCTACTACTGCAGTT
GGACTTCGTTTACTATTTTAGGcgttattttgatgttttttcttaTTGTA
GCTGATTGTAGTAGTAGAGATTTTCTAAGATTTTTCCATTTTATTAAAGG
TTGTTTGAATTGAAACTTTACTAAACTTAACATATGGGAACAAATgatat
ttgcaatttttcgaatGATCGCCAGTTTAATGATTACAAATGATTACAAA
TGATATATAATGAAAACGATTTGCGATATTCATCTTATAGATAGCAACCA
ACTAACCAACTGTGCTTTCGGAGGCTAGCTTCTTTTACTTGACAATCAAA
GTTCATTTTGTCATCTTTTCctgtttttccttttctttattttcttattt
ttccttaTATAAGCTCCCTGCTGTCAATCCACTTAAAAAGCCTTTGCTGA
GTACCTTTCACTTAGTTTTTTGAAGAAGTATAACCTTATGGTGACAAGTT
AATTCCTTGGCCTTCCAGATTTGGAACCTCGTGGCTAATTCCCTGGCAAT
ATTTACACGGAAAGTCTCGACttcaaaaagttatatttcGCCCTTTTTTG
GGTAATATAAAGTCACACCCAAACCCTCACATGACCAAATCTACTCAGAC
CTTtttttgaatagaccttttgaAGGAAGAGAAAGATTACATGGTTTTTT
ATAGGAGCAAAGTATATACGAGGCGGAAAAGATGAGTAATACTCAACATt
tagaaaacatttaaaactctaaaacgtgaaatttcctaggaaattctACT
AAGAatactgaaaataagaacaacttaagaacatttttaatatTAAAACC
CAAAAGTTAAGCACATTTTGTCTTCAAAACGTTTGgacgttctaataaaa
gaaaacgtATTATGGTTGCTTAAAAATAATTTCACCAGCCGTTTTAGTGT
TCCCTACTGGGTCTATTTTCTTAATATAGAAAACaaaatgagaaataaat
ggaaatATTTTGGTGAGATTATCATCACAAAGCATTCATCACttcatcaa
ttttattgaagatTATAGAATTATAGATTATTGGTGTGAATTAAAGTCAA
GTTGGACCACAATATGCTTAGGATTTTGTTAACAAGAGTATGTATGATGT
ACGATAGTCGTGTTTAAGTTAAGTTGAACCTGTCCAGATCAATTCGACgg
atgggcttttccagaaaaaactgtataccccctgttgaggaggtccattt
ttGTTGTTCCAAGGGATTAAGGTTtaatatgtggcggaattccatagtga
gatacaaaaatctgtcaaaaataagtgGAATTCCATGGAGGTAGCTTTTT
CAATCATACTAAagttcagaattccagagggtttTAAAcgtgaaattgcc
tggaattccagggggttacatCATTTCCAGCCACATAGGGATGGCCCTCC
TCAACAGgaggtatacggtttttttctggaaaagcccaatgtccAGGCTG
AGGGAAAATTATGGGAATGAGTAAACAAACATTCTTATTTTACACCTCTC
TCTTTGTTTCTATTCACAGCGAGCGATGAAGAAGAATATGATGACGTCAA
CGACGATGACGTCATGGTAGGTTGTCTTGGTTTCGTTGCCGGTTCATCGG
ACACGCCACACCTCATGTTATCATCACCTAATAAACACAACAAAAACACA
AACTCGAACTTGCATTCAGCACAATCAAACTCTTCTTCAAAGAACGCCAA
ATCGTCCGCACAACACGTATCATCTAAGCAAAGGAGGTCACGTCAAGATG
TAGCTTCTAAAAACGATATTACAAAAGTCACACCAGGTATGTTATGCTCT
TGTTGTTTTGTTTCTAGACATAAAAGTTACCCCTGATAGTTTAACCCACC
AGGATTTTAACCTAGGAAAATCAACCCCCTTGCCTCATGGAGTTTTGCTT
TGGTAGAATGACattgaccttttcataaattgcgTCACGAACATcccttg
cctcgtattcaaacaattaccatggtaattatgtctcttgagacataaaa
tgatttttttatgaatagaaggtatagttttgataaaatccgctGTGAAt
taatcaccatgacaataGTTTCAAAACGAGGTGAGTGATGTTTGTAAcct
aatttatgaaaaggtctgtTAATGAATGACATTGTTACAGTTTATATGAA
CTAATATTATCTTATAATAATTATCGTCTTATCATATAgcacccatatta
ctgtattatcatatagcacccatattactgtattttCATATAgcacccat
attactgtattatcgTATAACACTCATATTACGGTATAACacggattata
aacgactccagtcatTTGATTTGTGAACGCTAATCAGGTTAGCACACTCT
GGTCGTTTCAAAGTCAATGCGACGTCATATTTGATTATTGTACACGGACT
TTGTTTTTACGTTTCGTAACCGTTGAGAATATCCTACCGGGTGTCCTAGA
AAAAATTTCCCctctttgaattgaattttctcgagttctataaACTGTTA
TAGAATCaatctttttgcattggaaagaggaagggtgatgaacttaaatt
ttgaggggtagtttgtcaaatttggtcacCTAGATCGAAAGTTATATGTA
ggctaaatgctaaaacattacttttcaaaaaaaagacaCCCGGTACCGGT
TAGAATAATATCTGTTGATCCATTCTTTCAGGTGCCTACATCACAGACCA
AGAAGCGAGAAACGCTTACAAAGAACAAATGAGAGCCAAAGAGTTGATGA
GAGAGACTGAAAAACTTGACGTCAATAAATTACGTAATCAGTACGGGCGT
ATGAGGCGGTTACAACAAAAAGCAATGCTTGTTTTCAACGCCGATGACTT
TAAAGATGAATCTTATAAAGTGAAAAACCCGCCCTCCGCCATCAATCATT
TATTCGTTGATGTTAATAACGTGGTCGCTCCGCCTAGAGCTCGATATCGA
AAGCCGAGTAATTTTCCCGCCCTCAAAACGCTTGGGAAGGGTGGACCACC
CGCACCTCCCCGTCCAATCAAAGAATCACCGAAAGTAGTTCACGAGTCGA
CCAGTTCCAAAGGTGAGGGTGAAACaaaaacttctttaaaaaaacaggAC
AGTTTCTCTATCACCAACCCTTACGTCATGTTAGAAGTTCAAGGGAATGG
GGACGAGAGTGACGCAATCAACGACCCAGACGCGCATGCGCACATCATGA
AAAAGACAGCACCGACCAATAAGATTCGGTCTGCaccaaccaatcagctg
tcagCTCCCACTAAAAAAGACTCGAATCTTTCAAGTGAGCTTAACTCTGT
TTCACCTTTGTATAAAGTGGACAAATCGGCTTTGTATCCGACTAATTTCA
AACCTTTCCCGAAACGGAATATCGGGAAAAGATCAAATTTTAGCAGCAAA
ACGTAATAATGATTAACAGGTGGAATGTACAGGGACGGCGGTTAGTATTT
TATACAAATTCTATTTTTATGAGGGGAGGGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073532-exon-scaffold_94-1491911889:344920..345164 | TCONS_00073532-exon-scaffold_94-1491911889:344920..345164 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1510915933:344920..345164 | TCONS_00073532-exon-scaffold_94-1510915933:344920..345164 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1575043694:344920..345164 | TCONS_00073532-exon-scaffold_94-1575043694:344920..345164 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1491911889:346789..347055 | TCONS_00073532-exon-scaffold_94-1491911889:346789..347055 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1510915933:346789..347055 | TCONS_00073532-exon-scaffold_94-1510915933:346789..347055 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1575043694:346789..347055 | TCONS_00073532-exon-scaffold_94-1575043694:346789..347055 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1491911889:347951..348752 | TCONS_00073532-exon-scaffold_94-1491911889:347951..348752 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1510915933:347951..348752 | TCONS_00073532-exon-scaffold_94-1510915933:347951..348752 | Clytia hemisphaerica | exon |
| TCONS_00073532-exon-scaffold_94-1575043694:347951..348752 | TCONS_00073532-exon-scaffold_94-1575043694:347951..348752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:344920..348752 + |
Blast
The following BLAST results are available for this feature:
|
