TCONS_00073528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073528
Unique NameTCONS_00073528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073528 ID=TCONS_00073528|Name=TCONS_00073528|organism=Clytia hemisphaerica|type=transcript|length=221bp
TTAGATATAGCTGCCGATCTAGAAGAATGGGTCGTATATTTAGAAATATC
AATACCAGACAACCTTAGCACCTCCTTACACCAGCGTGAAATTGTGTCTT
TAGATACAGGTTTATGCGGTTTTGCAAAGCTAACGAACAGCTGTTTTGCA
TTTGGTGCTAAGGTTTCAACTCTATTAATGTATTCTTTTAAGTGTATCAC
TGCACACAACTTATGTTCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_94:182166..182443+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073528 ID=TCONS_00073528|Name=TCONS_00073528|organism=Clytia hemisphaerica|type=transcript|length=278bp|location=Sequence derived from alignment at scaffold_94:182166..182443+ (Clytia hemisphaerica)
TTAGATATAGCTGCCGATCTAGAAGAATGGGTCGTATATTTAGAAATATC
AATACCAGACAACCTTAGCACCTCCTTACACCAGCGTGAAATTGTGTCTT
TAGGTACAGGTTTANACAACCTTAGCACCTCTTTACACCAGCGTGAAATT
GTGTCTTTAGATACAGGTTTATGCGGTTTTGCAAAGCTAACGAACAGCTG
TTTTGCATTTGGTGCTAAGGTTTCAACTCTATTAATGTATTCTTTTAAGT
GTATCACTGCACACAACTTATGTTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045637XLOC_045637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073528-exon-scaffold_94-1491911889:182166..182268TCONS_00073528-exon-scaffold_94-1491911889:182166..182268Clytia hemisphaericaexon
TCONS_00073528-exon-scaffold_94-1510915933:182166..182268TCONS_00073528-exon-scaffold_94-1510915933:182166..182268Clytia hemisphaericaexon
TCONS_00073528-exon-scaffold_94-1575043694:182166..182268TCONS_00073528-exon-scaffold_94-1575043694:182166..182268Clytia hemisphaericaexon
TCONS_00073528-exon-scaffold_94-1491911889:182326..182443TCONS_00073528-exon-scaffold_94-1491911889:182326..182443Clytia hemisphaericaexon
TCONS_00073528-exon-scaffold_94-1510915933:182326..182443TCONS_00073528-exon-scaffold_94-1510915933:182326..182443Clytia hemisphaericaexon
TCONS_00073528-exon-scaffold_94-1575043694:182326..182443TCONS_00073528-exon-scaffold_94-1575043694:182326..182443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:182166..182443 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
TTAGATATAGCTGCCGATCTAGAAGAATGGGTCGTATATTTAGAAATATCAATACCAGACAACCTTAGCACCTCCTTACACCAGCGTGAAATTGTGTCTTTAGATACAGGTTTATGCGGTTTTGCAAAGCTAACGAACAGCTGTTTTGCATTTGGTGCTAAGGTTTCAACTCTATTAATGTATTCTTTTAAGTGTATCACTGCACACAACTTATGTTCAGA20406080100120140160180200220Sequence
Match NameE-valueIdentityDescription
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