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TCONS_00073519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073519
Unique NameTCONS_00073519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073519 ID=TCONS_00073519|Name=TCONS_00073519|organism=Clytia hemisphaerica|type=transcript|length=442bp
acgtttgtttgtttattgcattgaataaTTGTGAATATCTCTCTTTTAGT
GAAATGTAAACAACCAAAATTGCTGGAGAATTTGGCCGAAGAAAATTGAT
GTCGAAATAGTAAAGACAGGACTGTGAAGAACGCTATTAACATATCCAAA
AACAACGACATAAAAATCATTGAACCAATTCATTAACATGTGTCTGTACT
TCAAATTGGACAAAAAATACACACCAATAAAACTGAGCACAATCTCCAAG
GTCACACAACAAAAAAAGTTCCCTAAGATGGTGAAAGAAAATCTGCCGGA
AGATAGGCAAGATGGAATAGGTGCTGCAAGGGCGAGCCAGGGCGGACCGA
TGCTACAACAGGGTATTGTCTTGAATCAAGATGGAGGTGGGTTTGTTGGT
AATGAATTATTATTTGAAGATAACCAAGAGATTGGTTTGGTT
Run BLAST on NCBI

transcript from alignment at scaffold_93:235193..235634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073519 ID=TCONS_00073519|Name=TCONS_00073519|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at scaffold_93:235193..235634 (Clytia hemisphaerica)
AACCAAACCAATCTCTTGGTTATCTTCAAATAATAATTCATTACCAACAA ACCCACCTCCATCTTGATTCAAGACAATACCCTGTTGTAGCATCGGTCCG CCCTGGCTCGCCCTTGCAGCACCTATTCCATCTTGCCTATCTTCCGGCAG ATTTTCTTTCACCATCTTAGGGAACTTTTTTTGTTGTGTGACCTTGGAGA TTGTGCTCAGTTTTATTGGTGTGTATTTTTTGTCCAATTTGAAGTACAGA CACATGTTAATGAATTGGTTCAATGATTTTTATGTCGTTGTTTTTGGATA TGTTAATAGCGTTCTTCACAGTCCTGTCTTTACTATTTCGACATCAATTT TCTTCGGCCAAATTCTCCAGCAATTTTGGTTGTTTACATTTCACTAAAAG AGAGATATTCACAAttattcaatgcaataaacaaacaaacgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045633XLOC_045633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073519-exon-scaffold_93-1491911889:235193..235634TCONS_00073519-exon-scaffold_93-1491911889:235193..235634Clytia hemisphaericaexon
TCONS_00073519-exon-scaffold_93-1510915933:235193..235634TCONS_00073519-exon-scaffold_93-1510915933:235193..235634Clytia hemisphaericaexon
TCONS_00073519-exon-scaffold_93-1575043694:235193..235634TCONS_00073519-exon-scaffold_93-1575043694:235193..235634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:235193..235634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.172402 0.168669 0.616014 0.162261 0.391521 0.183269 0 0 0 0 0 0 0.259383 0.278358 0.114305 0 1.45675 0.169376 0.147218 0.646272 0.87292 0.317444 0.980881 0.875413 0 0 0.338005 1.03312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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