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TCONS_00073511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073511
Unique NameTCONS_00073511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073511 ID=TCONS_00073511|Name=TCONS_00073511|organism=Clytia hemisphaerica|type=transcript|length=708bp
GGACCAGTATGTAGCATAAGCATCATATTGCTTTTTCACTTGTTTGGTTG
TcgtttcatcaaatttgaaacCAAAAGGGGTACTGTCGATGTCATccata
atttctttttcaaagaatGGTGCAAGGCTATGCTTGACACGATAGCTCAT
CTTAGTTGCATCACACGTGAATGACTTCAATAGCTCACAAGGGAaattga
cttgaaaatttcagtTTGTTCAGTTGAGCATGAATAAGGTATATTTCTAT
TAACGTAGAATAGAGAGTGGACAGCCTCTGCTCTTAAGATTTCATCCTGG
CTGGAAAGGGTAAAGGTTCCAGAAGATAGATTTGCTGTACCAGaaacaaa
tcttttttggtttttatacAATCCAGTATGTTTTTTGTGGGTGTCACTAT
CTGTGTGTGATTTTACTTGGTTTTCACCCCTATTGTTAATCTTGAATgac
tttttacagaatttacaATGAGCCTTGGTTACATCCTATTCCTAGATAAA
AGATTGGACCTAGAACTAAGTTCAGTGAATTGGTTTTATGTCGATCTACA
AAGTTTCTTGCCTTAGCCCTTAGGAAAAATTCCTGgctttttggtcaaat
tttatgCTCAGTATGCCAAGACCTTATATTTTATGCTATTTTatgccaat
tttgataaaaagattaAATTGTATGATATTGTATGATTGTATGCCGAGTG
TGACCCCT
Run BLAST on NCBI

transcript from alignment at scaffold_93:35047..35754

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073511 ID=TCONS_00073511|Name=TCONS_00073511|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at scaffold_93:35047..35754 (Clytia hemisphaerica)
AGGGGTCACACTCGGCATACAATCATACAATATCATACAATTtaatcttt ttatcaaaattggcatAAAATAGCATAAAATATAAGGTCTTGGCATACTG AGcataaaatttgaccaaaaagcCAGGAATTTTTCCTAAGGGCTAAGGCA AGAAACTTTGTAGATCGACATAAAACCAATTCACTGAACTTAGTTCTAGG TCCAATCTTTTATCTAGGAATAGGATGTAACCAAGGCTCATtgtaaattc tgtaaaaagtcATTCAAGATTAACAATAGGGGTGAAAACCAAGTAAAATC ACACACAGATAGTGACACCCACAAAAAACATACTGGATTgtataaaaacc aaaaaagatttgtttCTGGTACAGCAAATCTATCTTCTGGAACCTTTACC CTTTCCAGCCAGGATGAAATCTTAAGAGCAGAGGCTGTCCACTCTCTATT CTACGTTAATAGAAATATACCTTATTCATGCTCAACTGAACAAactgaaa ttttcaagtcaattTCCCTTGTGAGCTATTGAAGTCATTCACGTGTGATG CAACTAAGATGAGCTATCGTGTCAAGCATAGCCTTGCACCattctttgaa aaagaaattatggATGACATCGACAGTACCCCTTTTGgtttcaaatttga tgaaacgACAACCAAACAAGTGAAAAAGCAATATGATGCTTATGCTACAT ACTGGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045625XLOC_045625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073511-exon-scaffold_93-1491911889:35047..35754TCONS_00073511-exon-scaffold_93-1491911889:35047..35754Clytia hemisphaericaexon
TCONS_00073511-exon-scaffold_93-1510915933:35047..35754TCONS_00073511-exon-scaffold_93-1510915933:35047..35754Clytia hemisphaericaexon
TCONS_00073511-exon-scaffold_93-1575043694:35047..35754TCONS_00073511-exon-scaffold_93-1575043694:35047..35754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:35047..35754 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.308164 0.165404 0.485545 1.03886 0.79009 0.382347 0.548444 0.567239 0.323517 0.723263 0.583319 0.46899 0.339212 0.0491058 0 0.0699175 0.138921 0.273527 0.302314 0 0.0710483 0.301766 0.0815192 0.222338 0.305338 0.635192 0.292467 0.20874 0.236739 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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