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TCONS_00073494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073494
Unique NameTCONS_00073494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073494 ID=TCONS_00073494|Name=TCONS_00073494|organism=Clytia hemisphaerica|type=transcript|length=3598bp
GCAAGATCTTAGTATGCTACAGTTAAACACAACTGCAGGACACAGGAAGA
AATGAcaacaacatttaaaaaaaagcttaCATGGTGTGTCAACTTGACAG
GAACAGGATGAGGAAGGATTCCAATATCGAATGGCTCAGGATCAACCCAA
AGGAAAATTGAGTTTAACAGTTTGCTAGACatttccaaataaaaaagaGA
GGCCGTCTGTCTGGCTGGAATCTTCGTCTTCTTTCCCCTCCGTCTGCTCT
CTGCTGTCTGCGTCGGTTTGTTTACATGCGACACAGAAGGAGGTCCCAAC
ACACAACTTGTGCTACCATTATGACTAGGCCTTCAATCTTTTTGCCAATC
TCAGGCGCTTTCTCAGGTTAGGTatctacaaaaacaaacctGTCATGTGA
CCAattcactttcgctttcaaggaaaaaatttcaacctGGAGTCCCCCTC
AAAAGTTTGTCGAAACAGTAGACAAAAGAAAGTAAATCTTCATGCAAGGA
TGGCTGAAGAGATTAATTTTGCAGGTGAAAGTGCACACTGGTGCTTGAAT
GCTAATAAGGGCTATTATCGATTTCTCGTCCTATTCTTTAACTGTTTGCT
GACATTTGGAtcctatttttgttttgacatgCCAAgTGTTTTGCAAGACA
GTTTTACTGGGACTTATGGAATCAATTGCACAACAAATAGTCATAATGTA
ACAAAATGTGAAGAACATCTGGGAATGACTGAAACTGAATATAATTTACT
TTACACTGTTTATGCATGGATGAATGCTTTGGTAGTTATTGGCTCTGGTA
TATTCATTGATAAAGTTGGTCAAAGAGTTGGTGCAGTGTTCTTCTCAGCC
CTTTGTGTTGTTGGTTCTGCTATCTTTGCATCTGGATATTTCTTGAAAGG
GCGTGGATCAATGCTTGTCTTATTTTTGACGGGGCGTCTTTTATTTGGGG
CTGGAAATGGCTCATTAACAATTGCGCAAAACAGGATCTCAGCTTATTGG
TTTGAAGGGAAGGAATTGGCATTTGCATTTGGAGCAACTCTTTCATTCTC
CAGACTGGGAAGCATATTAAACTTTTTCTTGACTAAAGACTTTTCACAGA
CCTATGGATTGAAATGGACACTCTGGGGAGGTGTATTTCTGTGCATTCTT
GGATTTGGCGGAGCACTTGTATTATACGTACTGGACAAGAATGGTATGGA
GCAAATAGCCCAGCAGCGTGAGCCAGGAGCCAAGAAATCGAGAAAGATGA
AAGTTGGTGATATTCGACATTTGAGTTTGCAATTCGTTCTATTGGCAGTC
ACCACAATGAGTTTCTACAACACTGTCTTCCCTTTTGTGGCTGACGCAAG
TCAGTTCATACGTGAGAAGTACCACTATAGTGATGACAGTGAGATGCCAT
CTTATTATGCGGGAAGTGTTTACGATGTATCTTTGGTTGCCACTCCTATC
CTCGGTATCATTGTGgATTATTTGGGTTATCGAGGCCTCTTAGCCTTTGT
ATGCGCCATCTTCACCATTCCAGTGTATTTGATTCTTGCTTTCACTACCT
GGCATCCGTTGTATGGAACCGTCCTCTTGGGACTCACCTATTCTGCTGCT
GCTACAAGTCTGTGGCCATCAGCGCCTTTGGTGGTGAATCCTGGCGTTCT
TGGTACCGCCCTTGGTTTGATGACCTCCCTCCAGATGATCGGTATCGGTG
TATGCTCACTCGTTGTGGGTGCAATCCTCGATAAGTTGAAGACGAACGAT
CACAAATGGGAATATGTGATGATCTTTTTGTTAGCCAATGCTGTTTTGTG
TGTCATCTCTGCTCTATTCCTCAACATTGTTGACTGGAGAAGGAGTGGTA
ttttgaacaaaacaaagaaaagaaactcGCAGAAGATGAAGAAATTGACC
GAATCGCGTGAAGCGTTGGTAGGGGATGCGGCCGAAGGTGACGGAGATTC
CATTAATTAACCACCGAATCATGGATTGGAATTATACCATTCATATTTTg
cattatttttcaatattgttTACAAGAAAGTAAGAGATATTATATTCACG
GTACATTGTGTAATACAGACACAACCTCCATTTTCAATGCAAAGAAACTT
ACTGTAGTAACGGATTTTGCACAAGATTCGAAACAGAAAGGTGAAAGGTG
AAACTACTTGAGgagataatcagatggtttgagatatttggcatgtggaC
TCCCTCTATTGTCCTGAGAAAAAgcccaaaatatttttagctaACAATTT
TCCAAGTTAAGATATACAAACtacaagtttttgacttttagtaaGCAAAC
AGTAGAATTTTAAAGCACGAACCGTGTAAGAACCCttttttcttgacttt
taaAAATAGTTAGATTTAAAAATACTTGAGGTTTTACTCAAGACCACAAA
AGGTTACTACAGTCCAAATAACTCAAGCCATCTGATTATCTCGTTAATGT
AAGTAAGCTATTTAGCACCGTAAAATAATTCTCAAGGGAAAAATAGTGAG
TAGTTAGGTTTTAAGtaagctttgaaaattttttttgaacgcTGTAGAGT
AAATGGACAAAACTGAATGAGTTGGAGGCTAGAAGTAAACGTCCAACTTT
TCCTACTGTAGGCAAGAAAAATGATGTCTTAAGATTTGCGCCGAATCGtg
gatgacggattgaatctattCTTTTCGCCTGGCACTTTTTccaaatttag
cggtaaatgtTACATTCAATCTCTTTAGCAGTTGAATGAAAACCACTTAT
GATGCGCAACTTATGTAGCTTTGAATCTTACATAGGAAATTCGTTTCTAG
CCTTCAACTTATACAGACGatagaatatttttaaatagtCCCATTGTACC
TACTTAGTATTGGATTTTTACGACaattattttgtttctaaagTATTCTT
CGTTTTTTATATTTCCATAGTCCAGATGTATTTTGTCATTTCAGTCCATa
atatttaagtatttttcaTTTGATTATCCATTAGTATTGATCAACAACTC
CTTCctcccaaaaatcgaaaatcggaATACGCTGCTAGATTAAAACGAAC
CTACTAAAGTTAACTTTGAATAAGCTGGTATTAAGAGCTGCATTTTGACA
CCCAAAGAATCTGCAATGTAATTTTAAGTCTCGGGAGCTAAATAAATTAT
CTAATATGGGAACTGGGTTTGTGACGACGCACGGTAAAGGATCGTGTTAT
CAAGCTTCCAAAgtacaaacatttttttcaaccaattcTCCTCGGTTTAA
TGTTGTTGTTTGCGACGAGCAGTCCTCTAGTGGGAGATTTCTTTTATGAC
GTACGAGCACGGCAAATAACTAAGCTCGttttatttgcaaaatatcATTA
TCTTCTATTTTCTATCTTTATTTGTGATTAATAATTTGACGTacataaat
tatttctttttttcagttagCATTAGATTTTAGTCTTAATATATAGATTT
ATAgtcttttttgtaagaataaatAAACTTCTATTCTAAATTGACCGAAG
TCTTCCGAAGGAATTAATCGCAATCGACTGATAATTGATTTTGTTCCTAT
TGCGTTGAGAAAAAGGATTGAAAGCTTTATAGTGGGTCGTAATTGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_93:193527..206905+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073494 ID=TCONS_00073494|Name=TCONS_00073494|organism=Clytia hemisphaerica|type=transcript|length=13379bp|location=Sequence derived from alignment at scaffold_93:193527..206905+ (Clytia hemisphaerica)
GCAAGATCTTAGTATGCTACAGTTAAACACAACTGCAGGACACAGGAAGA AATGAcaacaacatttaaaaaaaagcttaCATGGTGTGTCAACTTGACAG GAACAGGATGAGGAAGGATTCCAATATCGAATGGCTCAGGATCAACCCAA AGGAAAATTGAGTTTAACAGTTTGCTAGACatttccaaataaaaaagaGA GGCCGTCTGTCTGGCTGGAATCTTCGTCTTCTTTCCCCTCCGTCTGCTCT CTGCTGTCTGCGTCGGTTTGTTTACATGCGACACAGAAGGAGGTCCCAAC ACACAACTTGTGCTACCATTATGACTAGGCCTTCAATCTTTTTGCCAATC TCAGGCGCTTTCTCAGGTTAGGTatctacaaaaacaaacctGTCATGTGA CCAattcactttcgctttcaaggaaaaaatttcaacctGGAGTCCCCCTC AAAAGTTTGTCGAAACAGTAGACAAAAGAAAGTAAATCTTCATGCAAGGA TGGCTGAAGAGATTAATTTTGCAGGTGAAAGTGCACACTGGTGCTTGAAT GCTAATAAGGGTCagtatttcaatttcattttcctttatcTCCCACACTC TCACCTCGCCCAGTGTCTGGAAATTGCAGCGGTTATCTCCGGCGTAGATT TGAAGTTTGAGATCTGCTGCCTTCAACTTTTCCCAGTTAAGTTGGCGCAG CTCCGGCGTAACATTTCCCTCCTTTCCAGACTGGCACCTCGCCTCGACTG TAgcagcaactccagaagatttttctagagacctgaaatttggatgCAGA ATTCTTTTTTGATGGTGTAagtagaatattattatataaaaatatttgta aaatatttagtatatttatgaaaataacaaaagatatatctttttttgaa aaaagaagacattgcattgttttatttttttttttgaagaaaattagctt ggaaaaggaggaccctgccgacgcaccggactgtccggtgtatttgtccg gtggcaaaaagtatcctttcgctacaccggacgcaataagtccggtgtca gtcctgtgttgcatacagggaattttggacaccggacatttatgaaacaa aaaattaagaaacaccggacgcaccggactggtcatgtccggtgttctGA TtatccggtggaaaaaatatccttctccaacACCGGACATATGACtttct taagtccggtgtagagattgtccggtggtaaaaaaagttctcattttaca ccggactttcgcgtgtccggtgttcgttaagtccggtgcgtcggcagggt cctggaaaaggttgaaatgagtcaaaaaaggtggtaggacccattttcaa ggggcctctggaaatggaggaacaaaaagttataagtgaagaataagttt ttcttaaaaagagaaaccccaaatgaaaagaaaatccatttcggcaaaaa tgaaaacttttttttgggacattcccatgctaaagaagcaagaaagtgaa aaaaactatatacataaaaaaaaagaactaaaattagcgaatgtgatttt gaattcctcaccctttttctgataaacatacaaagtttcagcctttaACT Acgttttcctccatttccagaaacatttgttcatcaatagttgcaacttt tttttctcctgtcagaaaacaattttgaaaatgtttcaaaaacgtTCGGC ACTTTACCAATtggccgtctagcccgtgtcaacagaatttgaaaaatctt ctgaaGTTGCTACCTTCTTTCCAGCAGGCTAGCTCTAGCCTGGAGataca tgctatgatttcttattctatatactgatggcgaaatatatagcatggca TGGGCTGAGAGttaatttcccagatcctaataacggttgaaaatatagcc aatcaaattttgatattattttactggtcacactttcttatagagaaagc gcaagttccgaaatttgatttttattttagtaagtgaggacagcgccaAA TTCGATTATCCCACTGTAAAtcttttgaggcagaaatctgcctcaggtca tacccgtcctgtatacatcagattataaaagtACAGGACGGTTATCCTGT ttaggctagctctaaagctctaaaacagtaTCTAataccagacggtgtca atcgaacgaatcgaacgctgaatcaattgaacgcaattgaacacaatcaa agttgcaattcgattgtcgaacgcaatcaaattgcaattgaatattacct AGGATTTGCCGTTCCATTgcttcgattatgttcgattgtattcgacagta tatagacctaactcttcatacaaaaattacgggaaacgcatgtttggact ttgtaccctatgcttcacgcaagcacttaagccagagtcccgcaaaggcg ggacaaaaatgtTTGTCGAGCTCCCCCGCGGGTGAAAAACTATAATCTGT CAATAatcttctcaagcgaagagtatgcCAAGagctagctttacgatagt gccgcagatcatcagtggatagtattcaattatcatatCATgtagcatag ggtacaaagtccaaattaTGCGTTTCCTGTAATTTTCGTATGAAGAGTTA AGTCTATACTGTCCAGTCTAATGTCGGTTATTCCGGAAAAATAGTGGATA GATTCCAGAAAAGTGATaggaatcttagtgcagaaatgggaaACAACAAA TGGAAAAAACAACACTACCAATCGATAGCCAATCAATAGACTTTTTTGCC CTTCCATCATCCGTCATATTGAATTAGGCTTGGATATTGCAGATAAGAAT CTTAAAAACACTCGATGATCAAAACGCTGGCTACACTAAATCTccaaaat tctttgaataaaatcactaaaaaatccgacaaattttatgactttctGAC TAGGAAAGGGGCACATTTTTAAGAAAGTGAGTCAGTCAAAGGACCCGAAC ACAACTTTATTTGTGACCGTGGCCTTATGATACAAAGATTATGGTGGTCA AATTGTCGCAGTGAGAGTTcattgaaaatatgcaaaacatatgcaaaaaa atataatataaaacttacatgcatgaAATTAGCATTATATCTGATTATAT TAAAGTGCAATCTCAGAATCTTGTAAAAGAAAGATTaattttgcttctct tgaaaaccaGAAATACAAATAGTTATATCCTCTCATCTCTGACAACAACA ACCAGCACTTCAATAAACCGCCATAACATTATACataaagctgaaaaatc accagaAAAGGTACACAATTTACCATTAAATCATCCTGACGGTAACTGTG TGTGTATGTGTTTGTGTctgtccgaaaactttggggcaggctggagactt gaaaaatgatcagatttggatgaaatttggcacacttgttccttgggtga atatatgggggtgttttttcattttttgaaaattttcatttttaagggcg tggtcacaagttttcgccaaaacgaggctaaaactttggggtaggctgga gacttcaaaaatgctcagatttggttgaaatttggcacacttgttccttg ggtgaatatctgggttttttttttcattttttgaaaatctttatttttaa gggcgtggtcacgagtttttgcctaaacgaggctaaaactttggggcaga ctGGAGATTTCAAGGGCAAATCCCTGTGGGTGGTTTTCATTGTTTTATAA TTTCCATTTTAAGGGGGTGGTCATGAGTTTTTAGTTGAAATTggttacaa ttttacaattgggcctataaatgatttaaaaacactgaagttgagcccag tgcggttagcacgttcaacagtaatatataatataccgaattactttcaa ataatatAGAATATACTTTTTATATATCTAATTGACCCAGCAAATTTTTA GCTTGTTCAGACATTTTAGGGACATATataaagcaaaaatttcaagattt tgcaAGGACTTAAATTTTGCAGGTGGCATTATAGGGAgacaatatttttt atgattttgtgcCTTTTACTACCCAATCATGCATGTTGCTTGTTGAAATA agcattattagcgcttctttgatcaACATTTTAGAAGtagttatttgaca tttttgagttttgttcaaaaataGATATCGCAGATAAGACCTTTCTAAAT TTACATTGGGtgatgacacccaaatctgcAAGATCtccaaaatttaatcc ccgtgaaaatttatcccattgtACTGGTCGAGTGAAGGAAAGCGTAATTT gtcacaaaacaaaaaagaaatgtgCTGCAAAACTTCTGAAAAgggtttta tgaaaaaataaactggCAGTTTTTAATGAAACTTTAACACTTAAAAAATC TAGGCTTTGAGCCATagtggtattttttttcaatttttgcctgtagtgca aatcagtacccccaggggggttcggccaattttggacttctgaccttaaa attGTGCAgcatgcctcacaataggttaaattttcataaaaaaacactac atcttgaattttttgactttgacaTATATTATAAAGCTTTCCGATACCAC TTTAAAAGTAATCATCATGCTCATAATTATGCTCTTTTTTTTAGGCTATT ATCGATTTCTCGTCCTATTCTTTAACTGTTTGCTGACATTTGGAtcctat ttttgttttgacatgCCAAggtattttcagattttcagattttcatgttt ttaaaatgacAATCAAAATGTTATTTGTCAGATTTTATTTTATCGAGATC CTATTAATCTTCCTCCACTgctttatatttttgaaatctacctTTATTTC ATGTATATGCAATGATCGTCAAATAACTAAAATCTTTCAATGTCTAAATC TTGTTTTAGTGTTTTGCAAGACAGTTTTACTGGGGTgagaatttctttta ttttcctaaaGTTTCATTACTACCAAAAGCTGATATGAAATGTGTCACCA TAAGGCTGTAGATAAATACTTAATACATCGTGTCAAAGCGAAATCAAATT ACGCCAAATTAGTCACACTTAAAATTCATTTGGAGATCATGATTGTCAGT CGAATATTTTTTCAGTCAAGAATTGACCAATAATCGGTGCTTATTTTTCT GTACAATAGTTAACAATAATGATATTGTGGATATATTTGATGAAGGGATG TTTAAATTGTGGGTCCTGTAATTTATAAATCTGTGGTTATTGATCATTTT ACTTCATCCCTCAGACTTATGGAATCAATTGCACAACAAATAGTCATAAT GTAACAAAATGTGAAGAACATCTGGGAATGACTGAAACTGAATATAATTT ACTTTACACTGTTTATGCATGGATGTAAGacaatatttctttttaaaaag tgtAGAAAACCCAAACACATTTTATATATATCTATATGTAATTTTAGTAT TGATTGCGAATAACAATATTGTTAATTGCAAAATGTATATGGATGTATGT AAGAAATATTGTGTTTGAAGAATTGAAGATTTGTCAGGGTACACAAACTT CCTTCTCTCGCACTAATCTTGTTTTAATTCAGGATATAAATGTTATTGCT CCTGAAAGGATTATAACAATTTTATAACGGAACAACTAACTTTTATATTT CTACTTTAGGAATGCTTTGGTAGTTATTGGCTCTGGTATATTCATTGATA AAGTTGGTCAAAGAGGTTTGTATTATTTTGATGTGGAttccaaaacaaaa taaaaagagaTTAAGGGAACTGGTGTCCTCATTTCTTGAGTTTTAATGTA TGATAACTAGTAAGTAAATTGCTCATAATTGTATATAATACAAACTAAGA AAGTAAAGTCTGTGACAGTGGATATGACAATTATCGTATAAAATTAATAT GGTTTACttaaaattattgttttttcattttttgatgttgcacACTAACT ATAAACATTCTCAAAATCTTCTACCTCCCATCTCAGATTACATTTAATAT TATCAAGTTAGATTAATGTAAAACTGTAAAAACAGTAGATGAGAAATTAT GTCCTTCCTTTAGTTGGTGCAGTGTTCTTCTCAGCCCTTTGTGTTGTTGG TTCTGCTATCTTTGCATCTGGATATTTCTTGAAAGGGCGTGGATCAATGC TTGTCTTATTTTTGACGGGGCGTCTTTTATTTGGGTGAGTTATCTTCATA AATAAAGTTTGTTCCAATCTAAGAAAACATAACTTGTGATTACGATTATC AAAAaagattcatttttcaaaagcagttttcATTCATCTTTGAAACATGT TTGCCCCTTTttctatttgaattttttaattatgtAAAATGACATAATTT GTGGAGGATCTTCTTTCTCTAGAGTACTCCGTGCGTAGTAGAGCTTTTTA TATGAACAGAACTGTTCCGTATGTAAAATCATATGAATCAGCTTTTTCCC TTTGTATTTTTCAGGGCTGGAAATGGCTCATTAACAAGTAAGatgttttt tcaaattatttccaGCAATATCATTAACAAAATCAACTCTGGCCTTTTTT GTCTTTGGACCCCTTTGGATGATCAAGATCATCTTTCTAACTAAAATACG GTGGCCCCTAAGGCTCACAACATACTTCCAGTTCTGACACAAATCCATTT TGcaaatttataagaactgaAAGTGTCTTGTGAGCCTTAGGGGCAACCgt aatgaaaaaaacttttttgctcCTGTATCTACTCATTGAATTACTGTTTA TGAAACCAGTGTAcagatttttttattatatccGCAATTTTCTTCTATTT ACAGTTGCGCAAAACAGGATCTCAGCTTATTGGTTTGAAGGGAAGGAATT GGCATTTGCATTTGGAGCAACTCTTTCATTCTCCAGACTGGCAAGTTAAT CAAACTTCTTCAAAGATCAAGAAAATTGTCTTTACCCAAATACACTAAAA TTCGATGACCATGATGATACTGCTGGACAGAAaataagggaactaatttt tgcgttgaaaaaaaattgaatctttTAGTGAAAAATGGCCAAATTTGTAA TTTGCAGGTTctaattttcacgattttgcaaaaaaaccaAGAGAAAAGCC TTAATCAGCtcccacgaaaattagttcctttaAGGTTAAGATTGTCTATG AGGTCCCTACTTATGTTATATGATACCCAGTCCAAATAGCCATATTTAAC TTGATTTAACATTCCGCTGACATGACCTTAATGTAAACTGTTTTGCATTT CTGTTTTACAGGGAAGCATATTAAACTTTTTCTTGACTAAAGACTTTTCA CAGACCTATGGATTGAAATGGACACTCTGGGGAGGTAAAGATACTTTTAG GAAAGTTTTTAATCTTGACAAATAATTGATATTTTGTTACAACGGTTATC CTTTTACACCATTacatttcttttgaaagtttttcccTTATATCTAATCT ATCTTTTCAGGTGTATTTCTGTGCATTCTTGGATTTGGCGGAGCACTTGT ATTATACGTACTGGACAAGAATGGTATGGAGCAAATAGCCCAGGTGGGTA GCGCTCTATTTATTTAAGAATTCCTTTATGAGGCCCCCTAAGccgttttc gtgatggcgtgataaggacctttttcttgcgtgattacgtgatttggaat tttttcttcgtgattgtATGATTATAGGTCAaggcgtgatcgtgatttga aagatttttgagccgtgatgcgtgatttggtNCGTGATGGCGTGATAAGG ACCTTTTTCttcgtgattacgtgatttggaattttttcttcgtgattgcA TGATCATAGGTTAaggcgtgatcgtgatttgaaagatttttgagccatga tgcgtgatttggacttgATGCATGATTATCctaatttttttgctgatttt cgtgatcgtgattgaagataAAAATTATGTGATATCTTGAGCAGACTTAC CGATGGGGGGGGGCTCCTTTATTAAGGCAGTGAAAAAAGAAAGTTCCTCC CTCAGACCCGGTGGAAGTGGGTAGACTGGGGAGACTTTCCCATGTTAATG gttgttccaccgggcctgtACCTGATAGTCTTTATTAGATGCTAGAATGT CTATTAATAGATatttaagaaaagaaatttgacagTAAATTTGTTGCAAA ACAGTGGCTTACCGAATAGCGTAAAAACTCGAATAATGGATCTTTAACTG TATATATACTGAACATTCTAAATTTACTATCTTTACAGCAGCGTGAGCCA GGAGCCAAGAAATCGAGAAAGATGGTAATTTCTCCTTTCTGTGTATTTTT CCTTTCtatgtttttcttctttagaCATGTGTTTTGATAAGCCTGGTTGT CATACTGCTTCATATCACAGTGTTCAAGATCTATTAGAAAATTCATAATA ACAATTGTTATAGTTCATTGAGGCTCAGATAACTCCAAATATTGTTTCTT CACTTTACAAAGGAGCTCATCATTTCTAGCCATCTCAATTAAAATCTTTA CTGTTTatgaaatttataaattatAGCATTACTCACAAGTTTTGAAAAGT CACGATAGGAGTTTTTCGGATTTCGTTGCATTACAACTTTATGAGCATTT TCATTCATATGCTTTTTAGAAAGTTGGTGATATTCGACATTTGAGTTTGC AATTCGTTCTATTGGCAGTCACCACAATGAGTTTCTACAACACTGTCTTC CCTTTTGTGGCTGACGCAAGGtatcatcaaaatttcattatacGGCAACT AATGGGGTCGGTTAAGGCTAAGtagaaaaattcaagaaaagaaGCGGCAC AATATCTTTCTTTTGGTATACAGCTAAGGAATATGCCAGTTCTTCGGGTT GCCCTTTTCTTTGTCCAAGTAATAAAGTTTTTGATCTGTAGAGGTGATTT TGGTATACAGCTAAGGAAAACACCACGTCTTCTGGTCACCTTTTTTTTTG TCTAAATAATAAAGTCTTTCAAACTTCATATGCATATAGGTACAAAAAGT TTAGGTACTTTTTTCTAACCCATTCAATAGATGACTGTAGAATCTCAACT GAATCTTGAACTCCTTTTACTTTATTGTATTGAAAGTTACAGCCCCTGCA AGTGTTAAagaagattttgagaaacttaacttttaagaaagatatagagg tttttcatggtTTTTCATCAGTTACGTAACTTCCGTAATGTTCGATTCGC GTAGGGATCACCTCTAAAGATTCGAACGTTACCTTCCATAATGGCGTTAT ATAAAGCAAAACATGCAAAACTTTTATAcgtctttttttgtttttttttt tatacagTCAGTTCATACGTGAGAAGTACCACTATAGTGATGACAGTGAG ATGCCATCTTATTATGCGGGAAGTGTTTACGATGTATCTTTGGTTGCCAC TCCTATCCTCGGTATCATTGTGGTGAGTCGAgtctaaactttttttaaaa ggggTAATCGTCAGttaaacaatgaaattcaactgaaaaaattctttcac GGAGAAAAAGTAAGATAATGACCCTCAGAAAAGTTCACAATAGAATCAAC ATTTTCTTGTgataaatgaaacattttttcatcatttataCTAGCCTTAC GATATTCATCTATAACTTAAAACTGTTCTTTTAGTTTTGTGCAGTTTAAA AGGTCAAGAATATTATTCGCCCTAGTGACTTTATTTTTCTACGTAGAGAT GTAATGTTTCACAAAGGTTTTTTTCAAATACCCAGGCAATTTCAATATTC CATTTCAATTGACCCCTTGTGTTAGTATGATCTGATTGGATCTGATTGAA TTcgatcactgacctttatatatccctggaccaagttccTCAATGCCAGC CaggcaaaatattatgatcggagtttttttgaaattggNCAAGTCCCTCA ATGCCAGCCaggcaaaatattatgatcagagtttttttgaaattgatacc cgcggagagagcgctagatcttgTTTCGCTTGTACACTAATGATATAGCC CCAtttgtcgttaggcaaagtctcaaacactacaatggcttcttcgtggg taccattttcaaaaaaacttcgatcaaagatggcggatgtagcttggtcc agggatatataaaggtcagtgggcgAGATCAATTTGattgaaatcattga aaacaCTCTTCACAATCTGACACTGAAAGTATCAtaaaattctttcattt caggATTATTTGGGTTATCGAGGCCTCTTAGCCTTTGTATGCGCCATCTT CACCATTCCAGTGTATTTGATTCTTGCTTTCACTACCTGGCATCCGTTGT ATGGAACCGTCCTCTTGGGACTCACCTATTCTGCTGCTGCTGTAAGTTCA ACCCATTTAGCCAAGGCATCACATGCTAAGGTCGGTCTCCATAAGTGGCC GCCTACCACCAATTCTTTTCAATCTAAGCTTTTGCTTAGATGTCATTGGC CCGATTTTGGTGtatatttttttgcatttttgcctGTGTTGAACTCTTTT TAGCGAAGAGAACGCTCGAAGTCCAAAAGGACCGACGACGGCAAGCTTTT TCATAAAGGCAAAAAAAATCGTCTCTAGATATTCAGGGTGGTAGAGAAGA ATCTCTTCTccaaacaaaaaggttaaagTGGAAGAAGCTATTGCAAAGCG TATGATTTTTGCcatgagttttcaaaaattattttcagtctttcttttgt ttttacaagggttttttttattgtttcttCATAGACAAGTCTGTGGCCAT CAGCGCCTTTGGTGGTGAATCCTGGCGTTCTTGGTACCGCCCTTGGTTTG ATGACCTCCCTCCAGATGATCGGTATCGGTGTATGCTCACTCGTTGTGGG TGCAATCCTCGATAAGTTGAAGTAAGTgttgaataaaaatatagagTGTT TGGTTTTTTTAGGAAAGTTCTTTTCCGCGATTCCTTCTATTTCGAGACAT GTATCTTTAAAACTTCTAAAGTTTAGAAGTATTctataagtttttttatt ttttgttaaattacGTAACCTCTGCCATTATGGAAGTAAACGTTCGATTT ACGTAAAGAATTGCTTCTaaacattcgaacgtttgcttccatatgTGGAA ATTACGTGGCTTACTAATGTATGGAAAACCTCAAAACTCATTGGTATGCT ATGGCATAGCATACCAATGAGTTTTTATGGTAATCTGTTTTGGGTAATTT CGAATAACAGATTCGTAAGTTGTTTTGAATTTAAGGGCCTAAGAGAAAAT TTTTAAGGTAAAAGTTTTATTGATAGACTACTATATTTTATCATATTATG AAcgtgaaattttgtttttacagGACGAACGATCACAAATGGGAATATGT GATGATCTTTTTGTTAGCCAATGCTGTTTTGTGTGTCATCTCTGCTCTAT TCCTCAACATTGTTGACTGGAGAAGGGTAAGTTTGAATATCATTGGATAG AACAAACCCTTTGATAATCTTTGTCAGTTTTGAGCTTCGAGAAGGTCATG AAAAATCACACTTATAATTTAACTCCAGGTTTatgaggcattgttaactg gctagaaaatttgttcgagttaaggagagaTTCGAATCCTAGATGTTCgg gttatggagactccacctAACTCTAACAAAATGTGAATggctaaaaaatt cttttactcTCCTCATACACACAGAGTGGTAttttgaacaaaacaaagaa aagaaactcGCAGAAGATGAAGAAATTGACCGAATCGCGTGAAGCGTTGG TAGGGGATGCGGCCGAAGGTGACGGAGATTCCATTAATTAACCACCGAAT CATGGATTGGAATTATACCATTCATATTTTgcattatttttcaatattgt tTACAAGAAAGTAAGAGATATTATATTCACGGTACATTGTGTAATACAGA CACAACCTCCATTTTCAATGCAAAGAAACTTACTGTAGTAACGGATTTTG CACAAGATTCGAAACAGAAAGGTGAAAGGTGAAACTACTTGAGgagataa tcagatggtttgagatatttggcatgtggaCTCCCTCTATTGTCCTGAGA AAAAgcccaaaatatttttagctaACAATTTTCCAAGTTAAGATATACAA ACtacaagtttttgacttttagtaaGCAAACAGTAGAATTTTAAAGCACG AACCGTGTAAGAACCCttttttcttgacttttaaAAATAGTTAGATTTAA AAATACTTGAGGTTTTACTCAAGACCACAAAAGGTTACTACAGTCCAAAT AACTCAAGCCATCTGATTATCTCGTTAATGTAAGTAAGCTATTTAGCACC GTAAAATAATTCTCAAGGGAAAAATAGTGAGTAGTTAGGTTTTAAGtaag ctttgaaaattttttttgaacgcTGTAGAGTAAATGGACAAAACTGAATG AGTTGGAGGCTAGAAGTAAACGTCCAACTTTTCCTACTGTAGGCAAGAAA AATGATGTCTTAAGATTTGCGCCGAATCGtggatgacggattgaatctat tCTTTTCGCCTGGCACTTTTTccaaatttagcggtaaatgtTACATTCAA TCTCTTTAGCAGTTGAATGAAAACCACTTATGATGCGCAACTTATGTAGC TTTGAATCTTACATAGGAAATTCGTTTCTAGCCTTCAACTTATACAGACG atagaatatttttaaatagtCCCATTGTACCTACTTAGTATTGGATTTTT ACGACaattattttgtttctaaagTATTCTTCGTTTTTTATATTTCCATA GTCCAGATGTATTTTGTCATTTCAGTCCATaatatttaagtatttttcaT TTGATTATCCATTAGTATTGATCAACAACTCCTTCctcccaaaaatcgaa aatcggaATACGCTGCTAGATTAAAACGAACCTACTAAAGTTAACTTTGA ATAAGCTGGTATTAAGAGCTGCATTTTGACACCCAAAGAATCTGCAATGT AATTTTAAGTCTCGGGAGCTAAATAAATTATCTAATATGGGAACTGGGTT TGTGACGACGCACGGTAAAGGATCGTGTTATCAAGCTTCCAAAgtacaaa catttttttcaaccaattcTCCTCGGTTTAATGTTGTTGTTTGCGACGAG CAGTCCTCTAGTGGGAGATTTCTTTTATGACGTACGAGCACGGCAAATAA CTAAGCTCGttttatttgcaaaatatcATTATCTTCTATTTTCTATCTTT ATTTGTGATTAATAATTTGACGTacataaattatttctttttttcagtta gCATTAGATTTTAGTCTTAATATATAGATTTATAgtcttttttgtaagaa taaatAAACTTCTATTCTAAATTGACCGAAGTCTTCCGAAGGAATTAATC GCAATCGACTGATAATTGATTTTGTTCCTATTGCGTTGAGAAAAAGGATT GAAAGCTTTATAGTGGGTCGTAATTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045617XLOC_045617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073494-exon-scaffold_93-1491911889:193527..194086TCONS_00073494-exon-scaffold_93-1491911889:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:193527..194086TCONS_00073494-exon-scaffold_93-1510915933:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:193527..194086TCONS_00073494-exon-scaffold_93-1575043694:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198121..198196TCONS_00073494-exon-scaffold_93-1491911889:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198121..198196TCONS_00073494-exon-scaffold_93-1510915933:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198121..198196TCONS_00073494-exon-scaffold_93-1575043694:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198386..198410TCONS_00073494-exon-scaffold_93-1491911889:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198386..198410TCONS_00073494-exon-scaffold_93-1510915933:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198386..198410TCONS_00073494-exon-scaffold_93-1575043694:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198741..198850TCONS_00073494-exon-scaffold_93-1491911889:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198741..198850TCONS_00073494-exon-scaffold_93-1510915933:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198741..198850TCONS_00073494-exon-scaffold_93-1575043694:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199136..199191TCONS_00073494-exon-scaffold_93-1491911889:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199136..199191TCONS_00073494-exon-scaffold_93-1510915933:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199136..199191TCONS_00073494-exon-scaffold_93-1575043694:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199540..199660TCONS_00073494-exon-scaffold_93-1491911889:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199540..199660TCONS_00073494-exon-scaffold_93-1510915933:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199540..199660TCONS_00073494-exon-scaffold_93-1575043694:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199941..199963TCONS_00073494-exon-scaffold_93-1491911889:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199941..199963TCONS_00073494-exon-scaffold_93-1510915933:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199941..199963TCONS_00073494-exon-scaffold_93-1575043694:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200281..200366TCONS_00073494-exon-scaffold_93-1491911889:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200281..200366TCONS_00073494-exon-scaffold_93-1510915933:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200281..200366TCONS_00073494-exon-scaffold_93-1575043694:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200738..200810TCONS_00073494-exon-scaffold_93-1491911889:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200738..200810TCONS_00073494-exon-scaffold_93-1510915933:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200738..200810TCONS_00073494-exon-scaffold_93-1575043694:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200937..201019TCONS_00073494-exon-scaffold_93-1491911889:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200937..201019TCONS_00073494-exon-scaffold_93-1510915933:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200937..201019TCONS_00073494-exon-scaffold_93-1575043694:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:201715..201750TCONS_00073494-exon-scaffold_93-1491911889:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:201715..201750TCONS_00073494-exon-scaffold_93-1510915933:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:201715..201750TCONS_00073494-exon-scaffold_93-1575043694:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:202096..202196TCONS_00073494-exon-scaffold_93-1491911889:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:202096..202196TCONS_00073494-exon-scaffold_93-1510915933:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:202096..202196TCONS_00073494-exon-scaffold_93-1575043694:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:202784..202898TCONS_00073494-exon-scaffold_93-1491911889:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:202784..202898TCONS_00073494-exon-scaffold_93-1510915933:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:202784..202898TCONS_00073494-exon-scaffold_93-1575043694:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:203680..203817TCONS_00073494-exon-scaffold_93-1491911889:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:203680..203817TCONS_00073494-exon-scaffold_93-1510915933:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:203680..203817TCONS_00073494-exon-scaffold_93-1575043694:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:204211..204347TCONS_00073494-exon-scaffold_93-1491911889:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:204211..204347TCONS_00073494-exon-scaffold_93-1510915933:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:204211..204347TCONS_00073494-exon-scaffold_93-1575043694:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:204800..204902TCONS_00073494-exon-scaffold_93-1491911889:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:204800..204902TCONS_00073494-exon-scaffold_93-1510915933:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:204800..204902TCONS_00073494-exon-scaffold_93-1575043694:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:205151..206905TCONS_00073494-exon-scaffold_93-1491911889:205151..206905Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:205151..206905TCONS_00073494-exon-scaffold_93-1510915933:205151..206905Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:205151..206905TCONS_00073494-exon-scaffold_93-1575043694:205151..206905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:193527..206905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9186 9.68078 3.91215 4.75836 6.9121 7.05376 10.0776 7.94964 8.75442 8.91321 10.3723 8.07661 9.55995 8.24638 9.6863 10.1126 8.93751 7.0828 6.35533 7.4542 6.46673 5.55064 10.3472 9.61834 11.7017 12.9231 4.78945 3.45714 10.0347 9.55532
Blast
BLAST of TCONS_00073494 vs. Swiss-Prot (Human)
Match: MFSD1 (Major facilitator superfamily domain-containing protein 1 OS=Homo sapiens GN=MFSD1 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.725e-54
Identity = 135/393 (34.35%), Postives = 198/393 (50.38%), Query Frame = 2
Query:  593 CLLTFGSYFCFDMPSVLQDSFTGTYGINCTTNSHNVTKCEEHLGMTETEYNLLYTVYAWMNALVVIGSGIFIDKV-GQRVGAVFFSALCVVGSAIFASGYFLKGRGSMLVLFLTGRLLFGAGNGSLTIAQNRISAYWFEGKELAFAFGATLSFSRLGSILNF----FLTKDFSQTYG------LKWTLWGGVFLCILGFGGALVLYVLDKNGMEQIAQQREPGAKKSRKMKVGDIRHLSLQFVLLAVTTMSFYNTVFPFVADASQFIREKYHYSDDSEMPSYYAGSVYDVSLVATPILGIIVDYLGYRGLLAFVCAIF-TIPVYLILAFTTWHPLYGTVLLGLTYSAAATSLWPSAPLVVNPGVLGTALGLMTSLQMIGIGVCSLVVGAILDK 1735
            C L FGSYFC+D P+ LQ                  T+ +  + +  T++ LLY  Y+W N ++    G  ID+V G R G + FS    +G  +FA G    G  +   L   GR +FG G  SL +AQN  +  WF+GKEL   FG  LS +R+GS +N     +L        G      L  TL  G   CIL    AL L  LD+   E+I  + +   K    +K+ D++  SL   L+ +  + +Y  VFPF+     F  EK+ +S  S+  S     VY +S   +P+ G++VD  G + ++  +CA+  T+  +++LAFT W+P     LLGL+YS  A +LWP    VV    LGTA G M S+Q +G+ + S++ G ILD 
Sbjct:   50 CFLGFGSYFCYDNPAALQ------------------TQVKRDMQVNTTKFMLLYAWYSWPNVVLCFFGGFLIDRVFGIRWGTIIFSCFVCIGQVVFALG----GIFNAFWLMEFGRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYSKIEALLGSAGHTTLGITLMIGGITCILSLICALALAYLDQRA-ERILHKEQ--GKTGEVIKLTDVKDFSLPLWLIFIICVCYYVAVFPFIGLGKVFFTEKFGFS--SQAASAINSVVYVISAPMSPVFGLLVDKTG-KNIIWVLCAVAATLVSHMMLAFTMWNPWIAMCLLGLSYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQNLGLAIISIIAGMILDS 414          
The following BLAST results are available for this feature:
BLAST of TCONS_00073494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD14.725e-5434.35Major facilitator superfamily domain-containing pr... [more]
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