TCONS_00073489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073489
Unique NameTCONS_00073489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073489 ID=TCONS_00073489|Name=TCONS_00073489|organism=Clytia hemisphaerica|type=transcript|length=1735bp
GAAAGATGGAAGAATAAGAAAAGATACGAGAGATACAATACACAATACGA
AAGATATTTCAATAATTTATGAATTGGGACATTTGTAGTTCCTTGGTGTG
GCGCTTGTTGGAGCTCATCTGACAAAAAGCAAACTATTGGTTCTGTCAag
caagtaaaaatcatTCGAAATTCGGACACGGGATGTTTTTATGGACAGGA
CATTTTGCAAACCATCGGACAGATATTGGTGATGATTATGACATTCAACA
TGATACTAAACTCACCCCTTTACCTACAGATAAATTCAAAGCAGTACCCA
GTCTTAATCGCGAGTTGACGGACGCAGTATCGTTCCAATATATCAAGCGC
AATGGATGGTACATCACTTGTAAAAACAGATTGTGTCACATCGAACCGAA
ACGAAGGACTATGAATTTTGAGCGCCAAAGTTCCTTTTATCCATTGGTCA
ATTTATGGTATGACGGTTATACGGCGTTCGAATCGACAGTGAAGGCTGGT
TTCTATCTCCGTTGCAACCAACATCGTCTAGTGGTCGACCAATATGATGG
ATCGGAAATTTTTAAACAAGAAGCAAGCTTCAAAACACATAAAATCATTC
AAGgCTTTGAGAATGGTTCATGCAACGGTAACATATCTACGCATTCACCA
CTGACGTCACTTCACGAAAATTTCCGTCACATGAACGGCGGTGACGGAGG
AAGAGGCGACATGTCGTCACTTACGTCATCACCGTTGCTATGTCCCTGTT
GTCATGGGAATAATACTATCCAATCAGATGGCGGATTCACTTTGAGTGTC
AATTCACTGTATTCATTTAATGAATCGAACAGTGAGACAAACTTTGACGG
ATAAAGTTATCATTTACTCTCTTGGCGTTGGTACTCAATAAATAAAGTTA
AGTTCCCTAACTCGACCTCTGGCAGTAAATGTAATTTGTCtgaattgaag
aaaaaacaacaaaaagtatttattcGAGTTTTTCCTCTGAGTTTCTCCTT
TATTGAGAACTGAAAACTACATTTGTTGTTCGGATTATAAAGATATTCGG
ATACTAGGATCTACTTATACGAAATGCAAGTAAAAACTGACGAATCAACC
TTCCCCCCTTTTATTTTATTCGTTTTAATCAATTTAACGTTTTCGGGTTA
ATTCTTGGAATATCAAGCCCTAGCAAGAAATAAATTAAAGAGCCGATTTA
CACACCCCCTTCTTACAGACCCGCAggatttttttagccagtggCGGTAA
AAATGACGGACTGAAACACAATGGAGATTgatattccaaaatttttttgc
agcgaggattggtttatttgattattttcagtggacaAAAATTGGGGGAT
AActtcccactggggacgatattttggccaaattttgcagtgggaagggt
tcccagtgggtctctgagaagggggtgtatttacaaaaattagttctcgc
caaaaatAAGATATCGCGTCACttcaaatagttttttttttgtcagagGA
CTCAGACAAACGTCTCGTCCTTCCTTCACCCATGGTGAAGGGTATTATTA
TAGAATCTCATATGAAAAAtaagatattattttttaaatctaaatttgtA
AAAACGTAAATGACTTTTATTTCGTAAAATATCTTTAACTCGTTATGTTT
TATACACAACTTTAAAGAACTTTATTTCAGGATATTCCTCTTCGTTTCta
ttatacagttgacgctctctaattcgatcttcaag
Run BLAST on NCBI

transcript from alignment at scaffold_93:51009..57589+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073489 ID=TCONS_00073489|Name=TCONS_00073489|organism=Clytia hemisphaerica|type=transcript|length=6581bp|location=Sequence derived from alignment at scaffold_93:51009..57589+ (Clytia hemisphaerica)
GAAAGATGGAAGAATAAGAAAAGATACGAGAGATACAATACACAATACGA
AAGATATTTCAATAATTTATGAATTGGGACATTTGTGTTTGAATAATTTA
TACTTTCCCCCTATATACATACTTCTTTCCCCTATCTAAAATGATGTTCA
CAGCTTCATACTTAGTTATTTTTCTCTGTTTTTTCTGTCTTTGATTATGA
ACTCTTTGGGAAACTTAGTTGAGGTCTAAAGTTATGTCTCCCTCTCCCTT
CACCTTTATTCTTCTGTTTTAGAGTTCCTTGGTGTGGCGCTTGTTGGAGC
TCATCTGACAAAAAGCAAACTATTGGTTCTGTCAagcaagtaagtaagta
taatatttttttgtcgttATCTCGTCTCATTTGACAAATGTGATCAATCT
GTGTTTCTTCAAATTCCGATGCTTGTCTCCCTTCTCAATCAAGGGGCTTT
GTATTTATTTCATTTACCCAGTACTCTTTCATTGCGGTAAGCGTTTTGGA
AGCACATTTATCTACATTATCCACaattatttttcagaaatcatTCGAAA
TTCGGACACGGGATGTTTTTATGGACAGGACATTTTGCAAACCATCGGAC
AGATATTGGTGATGATTATGACATTCAACATGATACTAAACTCACCCCTT
TACCTACAGGTAACGACTACACGtcttttcataagaatatcctaaatttc
ggatgttcttagctttttcagtttttaaagcctaaaaatgttcttaacat
gttcttattttcaccattttgggATGTTTTTGAgttcacaaagccttaaa
atgttcttaacttgttcttaacatttttgccaacgaagccttatgttctt
agatagtttgttcttataaaaaaacgtgcattgCTCATATTTACGGAGTA
TTAGTTTAGACTGGATACCCAGAGTCTCAAACAAAGGCCTAGACTAGACT
AGAAGTTTAAgtagtttttaaagaaaattaagCATTGGTGCACTACATCG
TATCCATGTACAGAAACTGTAAAATTTACATTCAGTGTGTCGGCTTCAAA
TAAAATATGTTATAAATTGAATTGTATCATCGATTTATAGATGTTATTAA
AATTGTGTATTGAATTTACTTAAAACCTCATTGTCAGCGTCTTTTGTATT
TCAACATTTCAAACGAAGAAATGGATAAATTAAAATGAAGTTAAACAGGA
GCGTCACGACCCATAGATGGTTCACACGACGGTTCAACGGAAAGTTCCTT
TGGTGTTATAATTATCGTAAAGTTTAATAGGTTCGAGGCTAACAATACCC
AGTAAGGGCTGCTAGTATTAGACTATTATGAGCTCAATTTTAAACAGCTT
GTTCAAAACGCCCTGTCACTATTTATCGGTGTGCAAGGGTGTACAATCGG
TGTATTAAGAACTTCTTCGTGACCGACTTCTTCGTTGGCTATAATATTAA
AACAAGTTAACAACAgcttaaggctttgcggaccctAAAACACCTATTTC
CTTAGGAATGaacaaaatactcacaaaatgacgaaaataaggacatctta
agaacatttttagccttaaaattcaaaaagttaagaaaatccgtAGGctc
taaaaattttggatgttgttATCAAATAAAACGTGTGGGTACACGTTTAG
AATTATTCTTCATGGAGTGAGATTTAGcttatttcttgatttttcgtttt
tgttgACAGATAAATTCAAAGCAGTACCCAGTCTTAATCGCGAGTTGACG
GACGCAGTATCGTTCCAATATATCAAGCGCAATGGATGGTACATCACTTG
TAAAAACAGATTGTGTCACATCGAACCGAAACGAAGGACTATGAATTTTG
GTGAGACATTCTTTCTtctaaattactctctgtaatccGAATAGAATCTT
TCTATAAGTCCGGGAAAAGGAGACATCTAAAATATCTTCGATTGCCGGGT
AtatcattttgatattttgattctCTCTATACGATCTTCAAGTgactaaa
aatttaattctcaattatagaaagattctattcggattacagagagtaat
ttatacCACTCTTCAGCTGAgtggaccaatattttagttcaaaTCAACAG
AAAGAATCGAATAATAGAGGCTCAAAGTAGAGAAACTTGACTGTATATAA
AACTTTGAATCTTTTGAAATCACGGTTAAAGTAATGGCCGGAAATTCTTT
GGATCTTTTTTTCGTTTGCGTACAGATGCGTTTTTCGCATTTTTTACAGG
ATAAATTGTGCTTGCTTACTCATCTTGTTACAGAGcgttttttcgtattt
tttacAGTTTATAATTCTTCTTAATCATATATTTTCATTCCATTTTGTTA
CACAtacacacgcaacaaccttctactcagaatcatgttcgaacccGATA
CTTTTTTattgggacaccctgtagaataGAGTATTTATGTAATCTGTGGA
TGACCtctaaaaaccaatttttttgaaCTAATAGTTTTGTGATCATTTGA
ATTATATTGTCCCTATCAATTTTTTAACGGTTAATAATGACGTGTTATTA
TCACATTATTTTCGCATAATCTCTTTTTTTGGCATTTCTTGTGTTGTTTT
GTCGTTGTGTTGGCAACATCCCTTAATTAAGACCCCCTATAAAGCGTTAG
TTTCCATTTACACATCTTGAAATGACTTCTAAAATCACCACATTATTCTC
TCCCAATTTATGACTATTTTAACAAGTGACCATTTATTTCACGAATTCCT
CCttctagcccggggtccacttaagtgctctgaccatagtaaatttttta
aatttttttgtcatgtacaaaatatagatTTGTGCCTGATAcagccaaca
aaactatggcattattatacattttctgttaggccaactatttctgaatc
tgaaaattattTGAATTATATTGCCCCTATGTTGCAATCGAAATTCTTTC
TTCGCCACTTAAGAGTTTTTTTTAACGGTTAATAAATGACGTGCTATTAT
CACATTATTTTCGAATGATCTCTTTTTTGGCATTTCTTGTGTTGTTTTGT
CGTTGTGTTGGCAACATCCCTTAATTAAGATCCCCTTTAAAACATTAGTC
TACATTCACACACCTCGAAATGACCCCTAAATTACCACATTATTCTCTCA
CAATTTAACGTAAGACAATTATTTTGAAGGCAAATTTTTCGCAAATTCCT
CTTTCTCTACCTAGCCTGGGGTCGACTTAAGGCTTTTCGAAAGACTCAAC
GCTATCAAACATTATCAAAACACAATGTTCAATCAGAGGTAGACTCTATT
CTACTCTTTCATAAGAAGATTACCTGTTAAAACCTTCGAACTTTTGTAAT
AAGGTGAAAACGTGttcaaaaagaatcaaattttagaaacaggAGCAAGG
AAAAGCATAAAATTCTGTATTGCGAATTTTGGCTTCAATTATTCACTAGT
GCGAAACTTTTGTGAAAATGAGACCAAGATAGTGAAGAGAGCGATGAATA
ATGGCATGCCAAAGTTTATACCTTAATTTATTAAGCGTTTTAACACCAAA
GCAAAATATTGGTCTGTGCGGAACTCAAGTttgtgaattttcaaatttct
aacGAGCGCTTTCAAAGTGCTACTAAgggtttgaatattttttttgaccT
CATTTTTCTAAATCAGGTATCACTTTCTGTAAAgctgactctctctaatt
cgatcttcaaggaccaaggattcgaaaagtaaagtTCAAATTAGACAAAG
TTGACTGTATTTAATAACTTTTTACTAGAGCGCCAAAGTTCCTTTTATCC
ATTGGTCAATTTATGGTATGACGGTTATACGGCGTTCGAATCGACAGTGA
AGGCTGGTTTCTATCTCCGTTGCAACCAACATCGTCTAGTGGTCGACCAA
TATGATGGATCGGAAATTTTTAAACAAGAAGCAAGCTTCAAAACACATAA
AATCATTCAAGGTACAATGCCAGTTTCTCGTTTTTAAATTCAcgtttcaa
attgaaatatgtTAATCCGTGACACCCTGTCACCCTGTCCGATAAGAACT
TTTCATCCAAGGTACAATGCTAAAATTAGTGCCAAAATAGTGATATAATa
gcattttttaggttttttgtgAAATCCCCAATTCTCTAACTTCAATGGTT
GGATTTGCTGTTTGGGTGTCTGCAGCCATTGAAATTGGGGTTTGAGGGAC
AGTGAAATCGAAGTTCTGAAAGTTGTTTTTCAAGGCCTACTGCCAACATA
TTACTGCACTGATTGTactttctcaaaattttaattGGCGTTTCAAATCG
AAATAAGTTAATTCGTGAGACCCTGTCACCCTGTCCGATAAGAACTTTTC
ATCCAAGGTAAAATGCTAAAATTAGTGCCAAAATAGTGATATAAtagcat
tttttagttttttgtgaAATCCCCAATTCTCTAACTTCAATGGTTGGATT
TGCTGTTTGGGTGTCTGCAGCCATTGAAATTGGGGTTCGAGGGACAGTGA
AATCGAAGCTCTGAAAGTTGTTTTTCAAGGCCTACTGCCAACATATTACT
GCACTGATTGTactttctcaaaattttaagtGGCGTTTCAAATTGAAATA
AGTTAATTCGTGAGACCCTGTCACCCTGTCCGATAAGAACTTTTCATCCA
AGGTACAATGCTAAAATTAGTGCCAAAATAGTGATATAAtagcatttttt
agtttttttgtgaAATCCCCAATTCTCTAACTTCAATGGTTGGATTTGCT
GTTTGGGTGTCTGCAGCCATTGACATTGGGGGTTGAGGGGGAGTAAAATC
GAAGTTCTGAAAGTAGTTTTTCAAGGCCTACTGCCAACATATTACTGCAC
TGATTGTAgtttctcaaatttttaattGGTGTTCCAAATTGAACTAAGTC
TCATTGACCCATTTACTACGATTTGAACTTTTCAATCAGATTGATTGAAA
CTTAAGGATTTAAATATTCACGAATAAAGTTAAAGTGGCGGACGCATCTC
ATAGTTAATTTCGTCACCCTAATAAATCTttatagctcctgaaataataa
atctttggaattatgataaattttatatgatttgATGCAGAATTTTCGGA
AGATTATTATAGTATGAAATCGCAAATGTAGaaaatcgattttttgaaaa
atcaaaaattaaaatcataaatttgTCAAACCAGTTTTTAAATGCTTCTT
TTAGAAAAGCATTGAGAAGTCAAGAACAGATATAgataaaaagatcaaaa
aagcCATAATACTTTTGAAACGAGAACTCGTTTTGACGGATTTACTAACA
ATCACAAGTGCTGGGGCTCATTCGTATCAATATTTTTGCATTANATACTT
TTGAAACGAGAACTCGTTTTGACGGATGTACTAACAATCACAAGTGACCC
CCAGCTCATTCGTATCAATATTATtgcattattttttttatcttttcagg
CTTTGAGAATGGTTCATGCAACGGTAACATATCTACGCATTCACCACTGA
CGTCACTTCACGAAAATTTCCGTCACATGAACGGCGGTGACGGAGGAAGA
GGCGACATGTCGTCACTTACGTCATCACCGTTGCTATGTCCCTGTTGTCA
TGGGAATAATACTATCCAATCAGATGGCGGATTCACTTTGAGTGTCAATT
CACTGTATTCATTTAATGAATCGAACAGTGAGACAAACTTTGACGGATAA
AGTTATCATTTACTCTCTTGGCGTTGGTACTCAATAAATAAAGTTAAGTT
CCCTAACTCGACCTCTGGCAGTAAATGTAATTTGTCtgaattgaagaaaa
aacaacaaaaagtatttattcGAGTTTTTCCTCTGAGTTTCTCCTTTATT
GAGAACTGAAAACTACATTTGTTGTTCGGATTATAAAGATATTCGGATAC
TAGGATCTACTTATACGAAATGCAAGTAAAAACTGACGAATCAACCTTCC
CCCCTTTTATTTTATTCGTTTTAATCAATTTAACGTTTTCGGGTTAATTC
TTGGAATATCAAGCCCTAGCAAGAAATAAATTAAAGAGCCGATTTACACA
CCCCCTTCTTACAGACCCGCAggatttttttagccagtggCGGTAAAAAT
GACGGACTGAAACACAATGGAGATTgatattccaaaatttttttgcagcg
aggattggtttatttgattattttcagtggacaAAAATTGGGGGATAAct
tcccactggggacgatattttggccaaattttgcagtgggaagggttccc
agtgggtctctgagaagggggtgtatttacaaaaattagttctcgccaaa
aatAAGATATCGCGTCACttcaaatagttttttttttgtcagagGACTCA
GACAAACGTCTCGTCCTTCCTTCACCCATGGTGAAGGGTATTATTATAGA
ATCTCATATGAAAAAtaagatattattttttaaatctaaatttgtAAAAA
CGTAAATGACTTTTATTTCGTAAAATATCTTTAACTCGTTATGTTTTATA
CACAACTTTAAAGAACTTTATTTCAGGATATTCCTCTTCGTTTCtattat
acagttgacgctctctaattcgatcttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045613XLOC_045613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073489-exon-scaffold_93-1491911889:51009..51094TCONS_00073489-exon-scaffold_93-1491911889:51009..51094Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:51009..51094TCONS_00073489-exon-scaffold_93-1510915933:51009..51094Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:51009..51094TCONS_00073489-exon-scaffold_93-1575043694:51009..51094Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1491911889:51281..51351TCONS_00073489-exon-scaffold_93-1491911889:51281..51351Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:51281..51351TCONS_00073489-exon-scaffold_93-1510915933:51281..51351Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:51281..51351TCONS_00073489-exon-scaffold_93-1575043694:51281..51351Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1491911889:51546..51667TCONS_00073489-exon-scaffold_93-1491911889:51546..51667Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:51546..51667TCONS_00073489-exon-scaffold_93-1510915933:51546..51667Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:51546..51667TCONS_00073489-exon-scaffold_93-1575043694:51546..51667Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1491911889:52718..52858TCONS_00073489-exon-scaffold_93-1491911889:52718..52858Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:52718..52858TCONS_00073489-exon-scaffold_93-1510915933:52718..52858Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:52718..52858TCONS_00073489-exon-scaffold_93-1575043694:52718..52858Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1491911889:54787..54969TCONS_00073489-exon-scaffold_93-1491911889:54787..54969Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:54787..54969TCONS_00073489-exon-scaffold_93-1510915933:54787..54969Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:54787..54969TCONS_00073489-exon-scaffold_93-1575043694:54787..54969Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1491911889:56458..57589TCONS_00073489-exon-scaffold_93-1491911889:56458..57589Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1510915933:56458..57589TCONS_00073489-exon-scaffold_93-1510915933:56458..57589Clytia hemisphaericaexon
TCONS_00073489-exon-scaffold_93-1575043694:56458..57589TCONS_00073489-exon-scaffold_93-1575043694:56458..57589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:51009..57589 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.372141	0.385574	0	0.463831	0	0	5.7302	8.58635	3.88138	3.75021	7.62735	5.69589	5.30146	6.97183	2.10023	1.60656	2.32411	2.97866	7.49989	6.62763	5.29055	2.8025	2.36319	2.29695	5.39251	6.81361	0.767912	0.480348	0	0.137661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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