Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073487
Unique NameTCONS_00073487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073487 ID=TCONS_00073487|Name=TCONS_00073487|organism=Clytia hemisphaerica|type=transcript|length=1962bp
GTATAAAGCTAAGAGAAGACCATGATCAGATTAGTataaggctcaaagtg
caaaaaagtaTAATGAAAAAGTGCATGTGAAAACATTTTTACACCCACCG
TTTCATCTATAAGAACGAGATAGGGTAAGTAACAGCTTCCATTACTCTAC
TGAAAGATTAGCCATTTTTAAAGCACCTAAAATTCTAAATTGACCATTTA
TTTTTCAGcaagaatgaaaacaaaaagggAAGAAAGATGGAAGAATAAGA
AAAGATACGAGAGATACAATACACAATACGAAAGATATTTCAATAATTTA
TGAATTGGGACATTTGTAGTTCCTTGGTGTGGCGCTTGTTGGAGCTCATC
TGACAAAAAGCAAACTATTGGTTCTGTCAagcaaaaatcatTCGAAATTC
GGACACGGGATGTTTTTATGGACAGGACATTTTGCAAACCATCGGACAGA
TATTGGTGATGATTATGACATTCAACATGATACTAAACTCACCCCTTTAC
CTACAGATAAATTCAAAGCAGTACCCAGTCTTAATCGCGAGTTGACGGAC
GCAGTATCGTTCCAATATATCAAGCGCAATGGATGGTACATCACTTGTAA
AAACAGATTGTGTCACATCGAACCGAAACGAAGGACTATGAATTTTGAGC
GCCAAAGTTCCTTTTATCCATTGGTCAATTTATGGTATGACGGTTATACG
GCGTTCGAATCGACAGTGAAGGCTGGTTTCTATCTCCGTTGCAACCAACA
TCGTCTAGTGGTCGACCAATATGATGGATCGGAAATTTTTAAACAAGAAG
CAAGCTTCAAAACACATAAAATCATTCAAGgCTTTGAGAATGGTTCATGC
AACGGTAACATATCTACGCATTCACCACTGACGTCACTTCACGAAAATTT
CCGTCACATGAACGGCGGTGACGGAGGAAGAGGCGACATGTCGTCACTTA
CGTCATCACCGTTGCTATGTCCCTGTTGTCATGGGAATAATACTATCCAA
TCAGATGGCGGATTCACTTTGAGTGTCAATTCACTGTATTCATTTAATGA
ATCGAACAGTGAGACAAACTTTGACGGATAAAGTTATCATTTACTCTCTT
GGCGTTGGTACTCAATAAATAAAGTTAAGTTCCCTAACTCGACCTCTGGC
AGTAAATGTAATTTGTCtgaattgaagaaaaaacaacaaaaagtatttat
tcGAGTTTTTCCTCTGAGTTTCTCCTTTATTGAGAACTGAAAACTACATT
TGTTGTTCGGATTATAAAGATATTCGGATACTAGGATCTACTTATACGAA
ATGCAAGTAAAAACTGACGAATCAACCTTCCCCCCTTTTATTTTATTCGT
TTTAATCAATTTAACGTTTTCGGGTTAATTCTTGGAATATCAAGCCCTAG
CAAGAAATAAATTAAAGAGCCGATTTACACACCCCCTTCTTACAGACCCG
CAggatttttttagccagtggCGGTAAAAATGACGGACTGAAACACAATG
GAGATTgatattccaaaatttttttgcagcgaggattggtttatttgatt
attttcagtggacaAAAATTGGGGGATAActtcccactggggacgatatt
ttggccaaattttgcagtgggaagggttcccagtgggtctctgagaaggg
ggtgtatttacaaaaattagttctcgccaaaaatAAGATATCGCGTCACt
tcaaatagttttttttttgtcagagGACTCAGACAAACGTCTCGTCCTTC
CTTCACCCATGGTGAAGGGTATTATTATAGAATCTCATATGAAAAAtaag
atattattttttaaatctaaatttgtAAAAACGTAAATGACTTTTATTTC
GTAAAATATCTTTAACTCGTTATGTTTTATACACAACTTTAAAGAACTTT
ATTTCAGGATATTCCTCTTCGTTTCtattatacagttgacgctctctaat
tcgatcttcaag
Run BLAST on NCBI

transcript from alignment at scaffold_93:50778..57589+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073487 ID=TCONS_00073487|Name=TCONS_00073487|organism=Clytia hemisphaerica|type=transcript|length=6812bp|location=Sequence derived from alignment at scaffold_93:50778..57589+ (Clytia hemisphaerica)
GTATAAAGCTAAGAGAAGACCATGATCAGATTAGTataaggctcaaagtg caaaaaagtaTAATGAAAAAGTGCATGTGAAAACATTTTTACACCCACCG TTTCATCTATAAGAACGAGATAGGGTAAGTAACAGCTTCCATTACTCTAC TGAAAGATTAGCCATTTTTAAAGCACCTAAAATTCTAAATTGACCATTTA TTTTTCAGcaagaatgaaaacaaaaagggAAGAAAGATGGAAGAATAAGA AAAGATACGAGAGATACAATACACAATACGAAAGATATTTCAATAATTTA TGAATTGGGACATTTGTGTTTGAATAATTTATACTTTCCCCCTATATACA TACTTCTTTCCCCTATCTAAAATGATGTTCACAGCTTCATACTTAGTTAT TTTTCTCTGTTTTTTCTGTCTTTGATTATGAACTCTTTGGGAAACTTAGT TGAGGTCTAAAGTTATGTCTCCCTCTCCCTTCACCTTTATTCTTCTGTTT TAGAGTTCCTTGGTGTGGCGCTTGTTGGAGCTCATCTGACAAAAAGCAAA CTATTGGTTCTGTCAagcaagtaagtaagtataatatttttttgtcgttA TCTCGTCTCATTTGACAAATGTGATCAATCTGTGTTTCTTCAAATTCCGA TGCTTGTCTCCCTTCTCAATCAAGGGGCTTTGTATTTATTTCATTTACCC AGTACTCTTTCATTGCGGTAAGCGTTTTGGAAGCACATTTATCTACATTA TCCACaattatttttcagaaatcatTCGAAATTCGGACACGGGATGTTTT TATGGACAGGACATTTTGCAAACCATCGGACAGATATTGGTGATGATTAT GACATTCAACATGATACTAAACTCACCCCTTTACCTACAGGTAACGACTA CACGtcttttcataagaatatcctaaatttcggatgttcttagctttttc agtttttaaagcctaaaaatgttcttaacatgttcttattttcaccattt tgggATGTTTTTGAgttcacaaagccttaaaatgttcttaacttgttctt aacatttttgccaacgaagccttatgttcttagatagtttgttcttataa aaaaacgtgcattgCTCATATTTACGGAGTATTAGTTTAGACTGGATACC CAGAGTCTCAAACAAAGGCCTAGACTAGACTAGAAGTTTAAgtagttttt aaagaaaattaagCATTGGTGCACTACATCGTATCCATGTACAGAAACTG TAAAATTTACATTCAGTGTGTCGGCTTCAAATAAAATATGTTATAAATTG AATTGTATCATCGATTTATAGATGTTATTAAAATTGTGTATTGAATTTAC TTAAAACCTCATTGTCAGCGTCTTTTGTATTTCAACATTTCAAACGAAGA AATGGATAAATTAAAATGAAGTTAAACAGGAGCGTCACGACCCATAGATG GTTCACACGACGGTTCAACGGAAAGTTCCTTTGGTGTTATAATTATCGTA AAGTTTAATAGGTTCGAGGCTAACAATACCCAGTAAGGGCTGCTAGTATT AGACTATTATGAGCTCAATTTTAAACAGCTTGTTCAAAACGCCCTGTCAC TATTTATCGGTGTGCAAGGGTGTACAATCGGTGTATTAAGAACTTCTTCG TGACCGACTTCTTCGTTGGCTATAATATTAAAACAAGTTAACAACAgctt aaggctttgcggaccctAAAACACCTATTTCCTTAGGAATGaacaaaata ctcacaaaatgacgaaaataaggacatcttaagaacatttttagccttaa aattcaaaaagttaagaaaatccgtAGGctctaaaaattttggatgttgt tATCAAATAAAACGTGTGGGTACACGTTTAGAATTATTCTTCATGGAGTG AGATTTAGcttatttcttgatttttcgtttttgttgACAGATAAATTCAA AGCAGTACCCAGTCTTAATCGCGAGTTGACGGACGCAGTATCGTTCCAAT ATATCAAGCGCAATGGATGGTACATCACTTGTAAAAACAGATTGTGTCAC ATCGAACCGAAACGAAGGACTATGAATTTTGGTGAGACATTCTTTCTtct aaattactctctgtaatccGAATAGAATCTTTCTATAAGTCCGGGAAAAG GAGACATCTAAAATATCTTCGATTGCCGGGTAtatcattttgatattttg attctCTCTATACGATCTTCAAGTgactaaaaatttaattctcaattata gaaagattctattcggattacagagagtaatttatacCACTCTTCAGCTG AgtggaccaatattttagttcaaaTCAACAGAAAGAATCGAATAATAGAG GCTCAAAGTAGAGAAACTTGACTGTATATAAAACTTTGAATCTTTTGAAA TCACGGTTAAAGTAATGGCCGGAAATTCTTTGGATCTTTTTTTCGTTTGC GTACAGATGCGTTTTTCGCATTTTTTACAGGATAAATTGTGCTTGCTTAC TCATCTTGTTACAGAGcgttttttcgtattttttacAGTTTATAATTCTT CTTAATCATATATTTTCATTCCATTTTGTTACACAtacacacgcaacaac cttctactcagaatcatgttcgaacccGATACTTTTTTattgggacaccc tgtagaataGAGTATTTATGTAATCTGTGGATGACCtctaaaaaccaatt tttttgaaCTAATAGTTTTGTGATCATTTGAATTATATTGTCCCTATCAA TTTTTTAACGGTTAATAATGACGTGTTATTATCACATTATTTTCGCATAA TCTCTTTTTTTGGCATTTCTTGTGTTGTTTTGTCGTTGTGTTGGCAACAT CCCTTAATTAAGACCCCCTATAAAGCGTTAGTTTCCATTTACACATCTTG AAATGACTTCTAAAATCACCACATTATTCTCTCCCAATTTATGACTATTT TAACAAGTGACCATTTATTTCACGAATTCCTCCttctagcccggggtcca cttaagtgctctgaccatagtaaattttttaaatttttttgtcatgtaca aaatatagatTTGTGCCTGATAcagccaacaaaactatggcattattata cattttctgttaggccaactatttctgaatctgaaaattattTGAATTAT ATTGCCCCTATGTTGCAATCGAAATTCTTTCTTCGCCACTTAAGAGTTTT TTTTAACGGTTAATAAATGACGTGCTATTATCACATTATTTTCGAATGAT CTCTTTTTTGGCATTTCTTGTGTTGTTTTGTCGTTGTGTTGGCAACATCC CTTAATTAAGATCCCCTTTAAAACATTAGTCTACATTCACACACCTCGAA ATGACCCCTAAATTACCACATTATTCTCTCACAATTTAACGTAAGACAAT TATTTTGAAGGCAAATTTTTCGCAAATTCCTCTTTCTCTACCTAGCCTGG GGTCGACTTAAGGCTTTTCGAAAGACTCAACGCTATCAAACATTATCAAA ACACAATGTTCAATCAGAGGTAGACTCTATTCTACTCTTTCATAAGAAGA TTACCTGTTAAAACCTTCGAACTTTTGTAATAAGGTGAAAACGTGttcaa aaagaatcaaattttagaaacaggAGCAAGGAAAAGCATAAAATTCTGTA TTGCGAATTTTGGCTTCAATTATTCACTAGTGCGAAACTTTTGTGAAAAT GAGACCAAGATAGTGAAGAGAGCGATGAATAATGGCATGCCAAAGTTTAT ACCTTAATTTATTAAGCGTTTTAACACCAAAGCAAAATATTGGTCTGTGC GGAACTCAAGTttgtgaattttcaaatttctaacGAGCGCTTTCAAAGTG CTACTAAgggtttgaatattttttttgaccTCATTTTTCTAAATCAGGTA TCACTTTCTGTAAAgctgactctctctaattcgatcttcaaggaccaagg attcgaaaagtaaagtTCAAATTAGACAAAGTTGACTGTATTTAATAACT TTTTACTAGAGCGCCAAAGTTCCTTTTATCCATTGGTCAATTTATGGTAT GACGGTTATACGGCGTTCGAATCGACAGTGAAGGCTGGTTTCTATCTCCG TTGCAACCAACATCGTCTAGTGGTCGACCAATATGATGGATCGGAAATTT TTAAACAAGAAGCAAGCTTCAAAACACATAAAATCATTCAAGGTACAATG CCAGTTTCTCGTTTTTAAATTCAcgtttcaaattgaaatatgtTAATCCG TGACACCCTGTCACCCTGTCCGATAAGAACTTTTCATCCAAGGTACAATG CTAAAATTAGTGCCAAAATAGTGATATAATagcattttttaggttttttg tgAAATCCCCAATTCTCTAACTTCAATGGTTGGATTTGCTGTTTGGGTGT CTGCAGCCATTGAAATTGGGGTTTGAGGGACAGTGAAATCGAAGTTCTGA AAGTTGTTTTTCAAGGCCTACTGCCAACATATTACTGCACTGATTGTact ttctcaaaattttaattGGCGTTTCAAATCGAAATAAGTTAATTCGTGAG ACCCTGTCACCCTGTCCGATAAGAACTTTTCATCCAAGGTAAAATGCTAA AATTAGTGCCAAAATAGTGATATAAtagcattttttagttttttgtgaAA TCCCCAATTCTCTAACTTCAATGGTTGGATTTGCTGTTTGGGTGTCTGCA GCCATTGAAATTGGGGTTCGAGGGACAGTGAAATCGAAGCTCTGAAAGTT GTTTTTCAAGGCCTACTGCCAACATATTACTGCACTGATTGTactttctc aaaattttaagtGGCGTTTCAAATTGAAATAAGTTAATTCGTGAGACCCT GTCACCCTGTCCGATAAGAACTTTTCATCCAAGGTACAATGCTAAAATTA GTGCCAAAATAGTGATATAAtagcattttttagtttttttgtgaAATCCC CAATTCTCTAACTTCAATGGTTGGATTTGCTGTTTGGGTGTCTGCAGCCA TTGACATTGGGGGTTGAGGGGGAGTAAAATCGAAGTTCTGAAAGTAGTTT TTCAAGGCCTACTGCCAACATATTACTGCACTGATTGTAgtttctcaaat ttttaattGGTGTTCCAAATTGAACTAAGTCTCATTGACCCATTTACTAC GATTTGAACTTTTCAATCAGATTGATTGAAACTTAAGGATTTAAATATTC ACGAATAAAGTTAAAGTGGCGGACGCATCTCATAGTTAATTTCGTCACCC TAATAAATCTttatagctcctgaaataataaatctttggaattatgataa attttatatgatttgATGCAGAATTTTCGGAAGATTATTATAGTATGAAA TCGCAAATGTAGaaaatcgattttttgaaaaatcaaaaattaaaatcata aatttgTCAAACCAGTTTTTAAATGCTTCTTTTAGAAAAGCATTGAGAAG TCAAGAACAGATATAgataaaaagatcaaaaaagcCATAATACTTTTGAA ACGAGAACTCGTTTTGACGGATTTACTAACAATCACAAGTGCTGGGGCTC ATTCGTATCAATATTTTTGCATTANATACTTTTGAAACGAGAACTCGTTT TGACGGATGTACTAACAATCACAAGTGACCCCCAGCTCATTCGTATCAAT ATTATtgcattattttttttatcttttcaggCTTTGAGAATGGTTCATGC AACGGTAACATATCTACGCATTCACCACTGACGTCACTTCACGAAAATTT CCGTCACATGAACGGCGGTGACGGAGGAAGAGGCGACATGTCGTCACTTA CGTCATCACCGTTGCTATGTCCCTGTTGTCATGGGAATAATACTATCCAA TCAGATGGCGGATTCACTTTGAGTGTCAATTCACTGTATTCATTTAATGA ATCGAACAGTGAGACAAACTTTGACGGATAAAGTTATCATTTACTCTCTT GGCGTTGGTACTCAATAAATAAAGTTAAGTTCCCTAACTCGACCTCTGGC AGTAAATGTAATTTGTCtgaattgaagaaaaaacaacaaaaagtatttat tcGAGTTTTTCCTCTGAGTTTCTCCTTTATTGAGAACTGAAAACTACATT TGTTGTTCGGATTATAAAGATATTCGGATACTAGGATCTACTTATACGAA ATGCAAGTAAAAACTGACGAATCAACCTTCCCCCCTTTTATTTTATTCGT TTTAATCAATTTAACGTTTTCGGGTTAATTCTTGGAATATCAAGCCCTAG CAAGAAATAAATTAAAGAGCCGATTTACACACCCCCTTCTTACAGACCCG CAggatttttttagccagtggCGGTAAAAATGACGGACTGAAACACAATG GAGATTgatattccaaaatttttttgcagcgaggattggtttatttgatt attttcagtggacaAAAATTGGGGGATAActtcccactggggacgatatt ttggccaaattttgcagtgggaagggttcccagtgggtctctgagaaggg ggtgtatttacaaaaattagttctcgccaaaaatAAGATATCGCGTCACt tcaaatagttttttttttgtcagagGACTCAGACAAACGTCTCGTCCTTC CTTCACCCATGGTGAAGGGTATTATTATAGAATCTCATATGAAAAAtaag atattattttttaaatctaaatttgtAAAAACGTAAATGACTTTTATTTC GTAAAATATCTTTAACTCGTTATGTTTTATACACAACTTTAAAGAACTTT ATTTCAGGATATTCCTCTTCGTTTCtattatacagttgacgctctctaat tcgatcttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045613XLOC_045613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073487-exon-scaffold_93-1491911889:50778..51094TCONS_00073487-exon-scaffold_93-1491911889:50778..51094Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:50778..51094TCONS_00073487-exon-scaffold_93-1510915933:50778..51094Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:50778..51094TCONS_00073487-exon-scaffold_93-1575043694:50778..51094Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1491911889:51281..51347TCONS_00073487-exon-scaffold_93-1491911889:51281..51347Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:51281..51347TCONS_00073487-exon-scaffold_93-1510915933:51281..51347Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:51281..51347TCONS_00073487-exon-scaffold_93-1575043694:51281..51347Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1491911889:51546..51667TCONS_00073487-exon-scaffold_93-1491911889:51546..51667Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:51546..51667TCONS_00073487-exon-scaffold_93-1510915933:51546..51667Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:51546..51667TCONS_00073487-exon-scaffold_93-1575043694:51546..51667Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1491911889:52718..52858TCONS_00073487-exon-scaffold_93-1491911889:52718..52858Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:52718..52858TCONS_00073487-exon-scaffold_93-1510915933:52718..52858Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:52718..52858TCONS_00073487-exon-scaffold_93-1575043694:52718..52858Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1491911889:54787..54969TCONS_00073487-exon-scaffold_93-1491911889:54787..54969Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:54787..54969TCONS_00073487-exon-scaffold_93-1510915933:54787..54969Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:54787..54969TCONS_00073487-exon-scaffold_93-1575043694:54787..54969Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1491911889:56458..57589TCONS_00073487-exon-scaffold_93-1491911889:56458..57589Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1510915933:56458..57589TCONS_00073487-exon-scaffold_93-1510915933:56458..57589Clytia hemisphaericaexon
TCONS_00073487-exon-scaffold_93-1575043694:56458..57589TCONS_00073487-exon-scaffold_93-1575043694:56458..57589Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:50778..57589 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.171483 0.135508 1.05731 0.471392 0.320989 0.262653 0.657773 0.364136 0.496726 0.147685 0.320963 0.0771157 0.397663 0.0899771 0.54336 0.883491 0.745727 0.986548 0.137494 0.131747 0.596951 1.62535 0 0 0.293117 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top