Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073485
Unique NameTCONS_00073485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073485 ID=TCONS_00073485|Name=TCONS_00073485|organism=Clytia hemisphaerica|type=transcript|length=3012bp
TAATATTACGTTTTGATAGGCCAATCAAAATGCTTCACAGGAATTCCGAG
AACTGAAAAAACTGTTATAGCTGAGATGGCGCCTTATAATTTCACATGTA
AACAATATGGCGGAAATTCCTAACTGGAAAACCACAGGAAGACAAAAAGC
AATTTGGGGATGATTCTTCGTGGATTTTGGAAGAGATGGACTCTGCTTTT
ATTCTTTGTTATCGTTCTAATCATATTGATTTTCCAGCTATCTCAGAATA
AGGAAACTACTCCTGCCACTGTCAACTCAAAATTTACATGGCTTCATTCT
TTTAATACTTCATCCCTCAAACACTGTCGAAATTCAAAGCAAGGACCAAA
CCTTATCACAGATGAAAAAGGGTATATATGTCGACTTCAAGATGTCCAAT
ATAATGGATGTTGTAATAAAAAGTCAAACTTCACAGAACAGTATTCTTGT
TTGAGTTGCCAAAACAACCGATGTTGTAAGGTTTATGAGAATTGCATCTC
ATGCTGCTTGCATCCGCATAAGAGAAAATTATTGGAGTTGGTATTACAGC
ATGCGCAAACAGTACACAATCCGTTGTTGAGCTCAGTGCAAGATAATTTC
GAATTGTGTTTACATAAATGTCGAACATCTTCAACGAGCATTCGACAAGA
CAACACTTACCGAAATCTTCTTTACAAGTATTGTTTCGGAATGGAATCAC
CTCATATAACGCATGGTCGAAACAGATGAATTCTGGGGTGGTGTGATGGA
ATTAAGGCTAAAGAAAAAGGGAGGAGCGGAGGCTTTAATTTGTATGCTGT
TGAGACCTGATTTTCACTTTGATGTGGGTGACTTGCACGATCGATCGAAA
TAACCAGCTTCGAATCAACGAATATGAAGAAACTAAatcaaattctgaaa
atcgtAAAGAAGCACGATAACACGGAAACCAACCATTTGAGGAGACTGGA
AGTTTCTTACTACGAATACAATCCGAATGTTTAAACTATTTATAACCACC
CGGCGAAGGAAACGATAGAGAGAACTATAAAATGTTCAACGAAACAACTT
TTTTCTGAGCTACTCTCCCGCTTTCAAACATTCTTTTGAAGCTATTTTCG
ACACTGTAGCGTTTAATAAGTGCAGCTCTGGAGGCTATACGGACATGGTT
ATTTAGAATTTGGATATTCTAGAATACATATAACATTACGCAATGTTAAG
TTGTTGGGAAAACAAGGAGGTGTGCAATTCAGGATGTCAACGAACATTCA
AGAAATTGGGTTGTTTTGCATTCCAAGAAGAAACCACTCCGAACCTGTTG
ATCACTGATCTGGTGGCCAATGAATTCACTTCTTCAGGGATACTTATTGA
CCAGTCCAAGGATCTAGAGGCTTCCATTTTGAGCTTATTATGCAGATGTC
TCACCAAAACTAAAGCCATGGGCTACACCATCTTTGGACTAACCAATCGT
GGTCAATGCCATGCTGGTAACCAGGAAACCAAACTAAACAAGCTTGCTAA
AGATGGTAGATTTGCTCCGCCTCTTGCATGTTCGAATACCAATAAAGGTT
TATGCAACGTTTTAAATGAAACGGAAAATTGTTTTGGCAAAGATATGCAT
TCATTTTATTATCAGGTCATGAAGACAGTCGATGGTCAATGGGGTTCTTG
GTCCCTCTTCACGAAATGTAATACGACGTGTGGAAAGGCTTTTAAAACGC
GTCAACGATCGTGTGACCAACCTAAACCTCTGTATGGGGGCAAGATGTGC
CAAGGGCCTTCTGTTGAAGTCCAAGAATGTCATTTGGGTGGATGTCCAAG
AGACGGTGGATATACAAGTTGGTCAACTTTCAGTTCATGCACTTTATCTT
GCGGTGGAGGTGTTCAAAGCAGAACACGTTCTTGCACTCAACCACCACCT
TTGAATGGAGGGAAGAAATGCTCTGGTCCTTCCAGTGAAACCAAGGCTTG
TAATACACAACCTTGCCCAGCACCTTGGACTTGCCAACAGAAAACTACGC
AATGGGATGTAGATGGAAATGGAGATGCTCGTTATTTCGATCGCCATCAA
TTGAAATGTCCTTCTGCAACCGCTATCAACCTCCTTCGTCTCGAACGAGA
TAGCACTCTCACCAAATATCGATTTGTATACAAGTGCTGTTCCATTGGAG
CGACAGCATGCAACTCTACAAAATTGACACGCAACAGCTTTTCATATGAT
GGTACAGGGAGTGCGCGGTATTTAGATCGCCAATATGTCGAGTGTAACAA
GCATTTGATCTCTTCTTTACGTCTTGAAACCAATCTATTGAATTTCCAAG
GTGACAAAATTCGTTATGTCTACAACTGCTGTCAAGCACCCAATCAACAC
CGAACATGTTACTCGGCCATGACGAAATTCTCCGACGATGGAGGTGGCAG
TGCCATTTATCTTGATCGACAAAAGATCGAATGTAACCGAGAATTTTCGT
TGTCGGCATTTCGTCTGGTGAGGGATACAAACACAATGAAACATTGGAGT
TATAAATACACTTGTTGTAAAACAACACCTAAGTCTTTGGTCAAAACTGT
TGTTTAACACATCAATCCTCTATGATATTTTATAATACATATGAAGAAGT
AATTTTCTTGTTCTCATCTTGAACCTTTATAACTCGATTGTCTACTAATA
AACTTAACAAGTTTTCTATCTATTCCGGTTAGTTAACAAAAACTTATAAA
CCTTAATCCatgtttcgaattttcaatAACTCGAACATATTTCAcggttc
cccgtgcgtgttcgagttatgggaCTCAtctgtatttttttgtattctCT
TGAAATTTCTCTCGAAATTTCTCTCGAGTGCGCTTCCAgtaattcttcat
ttttctttccatATGATTTACTAAATTCTCATAACGAAAGACGATTGCAC
TGTATagttttttaagtttattttagGAACCTTAGAAAAATAGTCGAATA
TGATGACTCATAATGTAACTATTTTGATGATTTCCAAATGAATAATAAAT
TGTTCTAACCGT
Run BLAST on NCBI

transcript from alignment at scaffold_93:18913..33364+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073485 ID=TCONS_00073485|Name=TCONS_00073485|organism=Clytia hemisphaerica|type=transcript|length=14452bp|location=Sequence derived from alignment at scaffold_93:18913..33364+ (Clytia hemisphaerica)
TAATATTACGTTTTGATAGGCCAATCAAAATGCTTCACAGGAATTCCGAG AACTGAAAAAACTGTTATAGCTGAGATGGCGCCTTATAATTTCACATGTA AACAATATGGCGGAAATTCCTAACTGGAAAACCACAGGAAGACAAAAAGC AATTTGGGGATGATTCTTCGTGGATTTTGGAAGAGATGGACTCTGCTTTT ATTCTTTGTTATCGTTCTAATCATATTGATTTTCCAGCTATCTCAGAATA AGGTAATTGTTTCTTTTAAAACAACTTGCTTGCTTGTGTGTTTTAAcctt agttttttttttcattttatagctacactcttttcttttttatatatagA ACCAGTACTACTTTTACCCTTTTACCCCTAACGACCCCTAAgttgcttga aattttcagactcaGCATTGTTGTTaaaacttgttcttatttttttgaca attttcagcCACTTTGGCTCTCTTGGGGGAGCTTAGTCTGTATGtaaact tacaccacataagcaaaaatcccgcgagtatggtatttttgaccctgttt gaatttgtttacatttggtttgaattttgtGCCAAAAAAGCTGTTGATAA GGTTAGCAAATCAGGTTCGTGCACTTCCAATTGAAACAACATATCACGTG ATTTCAGCAAatgtttaacagccaatagaattctgcgaaAAGAttatttg gcatctacaaaaatacccagCTAACTCTTTTAACGACCCTGGACACTGCC GTACATTGCACGGTGGAGTCCGGTGGGCGTCCGATGGGTGTACGGTGGTA TTTTAGGTTAGATCGAAAACACCGTACAACCCCACCGTACAGAATCCCAC CGTACACGGAATTGCCACCGTACGATTGTCCGGtggatgtatgcatgctc acaAGGGTGTTGTGGTCAGTCGGAGTCAAGGAAAAATTTGTAATCTTTCC GAAAAATAATTTAGTTTGTGTGAGCACAGAACGCTAGTTCTATATCTCAA AAGAAGAAGCatgtgttttgaaaaagttcgaaacaaacaAAGCTGTGGTG AAAATATCTGGCGTCTAATCAGTAGACGTCGAAAAGCCGATAGTTACGCT GGGAATGAAGTTGATGAAATACTTTCCATTCGCTCGGCTTTTGTTTCGAC ATTCGaggagtttttcttttagtttttgaCNTTTTGTTTCGACATTCGag gagtttttcttttagtttttcttttagtttttgatCGTTCGGCGATTGAG GGAATCAGAGAAAACACGCACCTAGTCCGCCCTTATTCCGCCTAAGGTGT ATACAAGAAGGCCGCCTGACATATTTTGTACGGTGGGAATTCAGAAACCT GATCGACTTCccaccgtacaatgtacggcggtATATTTCGTGTACANGGC TTAACTTTAGTTTTTTTAGTATACCTTGCTTATTGGTAttaaaaatttcg cgattcgctATTTTTTTTCGAGGAAATGTATTTTGTGTGTATTAATTTAG CGATTGCcagtttttggaaatttttgcgTGTATTAGATTTCTTTGCAATT TACTAAATTTGGCATTCTCAAAAAGCGGGaataaagcaagaaaatgactg atttcgCTTGAAACTCAACGTATTAGGTGGAAACATaccaaaaatagtaa caaaactagtgacaaaatagtacacaagtgtttcaaccggtattccaacg aagccatattttggttggtACAGAAATTTCACCCGCTCAAAatccaaaac aacaaaatggtcaatctcactaaagcaaaacattgcggccacggcatttc cctggataaaaattctggtcacgtgaccatccgtgattttagaccaatga aaacgcttcatatccccggattaaagttgtgtctacactaacacacggga aatggctagaaaaagagagaaaaagagagaaaaaaccgggggtcaaatta aatttttctcccttcttgcagCACATACAGTATGAAAggctttaagaggc catttatttaagaataAGGGGTGTTacatcataaataaattatgtaagta agtgatattttaagtaaaatgatcattaacaattttattttgaagtttgt ttttaaaaacaaaacccccgtgctagatgatagtctcattttcttaactt atggacccatttggaagtctttgtaatacagatcatttggcagtgtagtt gcagcctacagtatacaagaattggaatctaaagtctgaagtcgtaactc cttgccagtgaccctgcagagaaatttttagttggcagacactgacttta ggttggtttggaaatcgttttattttgaaatgtaatcttcactttagatg aatactttaatttatttggattcatgaaaggttcaaggtttgtttacttt ttatttcaaattatctcattgaaaaacaaagatttttgatagctatcagc gtgggcttggccgccattttgaatttcgatttcttTTCTTCTGTagtcgg caatttagaggttgttcgtaatacgcgatttggcttacgcgtaacacttg tgagTAATTAAGTGTTACAAAtaagtattttcaattttcggcctattttg aaaatttttcgcgtgtatttaatttcacaatttttattttttttagattt aaacagtattaaattttgcaaaatttgaccTAAAAAATTGCCATTACATA CTAAATACCATTACAAATATggtatatatacgttttttgtttaatttttg tttgggaGAATGTGACAACCTATTATTGTCTCAGTTCTGCATATTAAATA GCTCCATCCATTCAGGCCAGAAATTATCCGCTCCGTATTAAGGAAACGAA ACCCTAATACTGCGCAGGAAGATTCACAGTATTATGTATTGCATGCTGCT AATTTGGGAGAATGCTAGAGTGCcaattttgaacaaaacttattTATAGG TAATGTCTAATTTCCCGCTTGTTTTAATTGACATCCACTGAAGTGTGGAG TAATTATACTTAAGCCAGTATACATGGATTCTGTGAAAATGTACTCATTT GAGTGTACTTATTTTTTGAATGGTTCTTCTAGACCTTTCCCTATTTAAGA TATTatgttgaatatttttcaattttaatttcaatttcaatatcttttat aatagaaataataataacaaagctttacaggtttgcaggccacaGTGagg acacatgggcctctataaaccgcttgtactttttacaataatctttttga aatagagtttttttcgcgggctcccccggactttccattttgtgttgtct cctttgattttagcatttttttcggcttccttacaccattctttgattat ttgtctttcatttttggtcaaatcctctgtcactcggtaaggaaagcctt ttgcttttgttattgcttgcaacactgtgttcgtgtcctcttcgttcgta aatttgactttgattggtcggtatctcgctttatcttctctttctttcgt aaatttcccAATCCACTGCGTCTCAGTAGTCTTTATATTCCTCAGACAGA GCCGCCaaccaataattttgtcatggatAAATTCTACATCCTTGATTTTC GTTTCTTCTTCAGATTCATCTGTTGATTCATCTATCCCATGAAAAATAAG GTTGCATGCTGTCGATCGAATCAGCTGCTCCTCCtgcttttctttttgaa ttgcatctccaatgtttttctcgatgtgtttgaatgtgattttagcgtag ctcattggtggtcttccctcttctttcttttcgatgatgTTTTCAATCTT CTTCTCAAGCGTGGTTTTTCTGGTGTcgatagtttctttcatttcgttga ccataacattgacgtcttgtgctttcaaatggtttatttcttcgtcctgc ttttcattatattctcacaggctttaatttcgtttttgaattctttaatt tttaatgtttcatttgaattatacctttccattacctgtggtgtgatttt ggtacagttttgACACTGGAAACTTCTTGATTTGTATGACAAGCATATCT GGATTTGGTAAAGTGGCAGTTCTGTACAAAGATAATGGACTAAGCGGTGG CACTTCCTGTATTGTAGGGTATCTTTTGGtgcgttttcttcatttatgat gcactttgacgggctgcaaaagtcgtttattgatggtgatttttgatttt tttcctggatttttttccgccatctttgtgcatttttcagacGACAACCG TTCAGTTTTGTATTTGACGTCAGAATGAATATATTAGTTAAGTTAAGTTA AGAATAGGATGGAAGATACAAGCCCATGAATAAAAATATCCCCAGAATGT ACCAAAATGACTTTTCAGagatgttttaaaaatatatttttttgcgacat ctttgtcaattttaggaatttttggaCCTTATTTCATAAATGACATATTT TTCCCTGATGATTCCAATGATATAGGTTTCGGGAGTAATTTGGGATGAAA TATTCCAGAAAATCAAGATTTGCAGATTCTTTAAAAtggttttattttat taaattttcaaatttgaatttcaaagagTAGAAAAGTATGAagaattcca aaatttttgattttgggtGACATTAAAAGTGGAATATTTCATCCTATCCA CTCTTTCGGTGAATATATTGCTATTTTCTGAAAGATACACTCTTTACTAT TACACTTATGTAATTTTCATCCTTAAAATAATATCCAttagtttttaaaa catttttttggacaacccgttttttatcaatatttttggaatatctcatC CTTTTCTACTCCTTTCATCATTTTGCTTACATTTTCTAATAATTTATATG GTACACTATCTGAGAGTATAATTTCAAAAGGGAATCTTTTATAGATAAGG AGTAATTAACTGTGGAATTTCTCATCCATCCGCAAATAAGAAAGCTCTCA TCCTAGATTACTCCTAATTTTGTCCTTAAATTGTAGCTGTTCAACTCAAC CAATTAAAGCCGgattaaaaaaatcgaaatatttcatcatatctcttttt ctcaaaataaattgaaatactCATGTAAAAGTTTTCATTAAGAAAGGTTG TCTTAAATAGGAGATACCCAAAAAAGACAATTTGNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNta agaaacaaatgactaattttaatagatcgtcaatatttgtgttctgaatg attgtttaatggtcacgtcacgtagatatcaattataaatgtgttaaatg catatccaggtaggtccataaaagtatcacttgttttgtcCTTAAATTGT AGCTGTTCAACTCATCCGATTAAAGCcagactgaaaaaatctttttctct aaataaattgaaatactCATGTAAAAGCTTTCATTAAGAAAGGATATCTT AAACAGGAGTTACCCAAAAAAGACAATTTAGTACattctaaaaaaacatt tatctaGACCAGTTATCCCACAACAcaactaggagaaaaaaaaagcataa aatgataTGAAGtattttatcaataaaagtaaaaaactaaaaatagtATG TGGGGAAAATAAGTTAAGCAAAATTTGTATATAAATCAGAAAACTATAAT AATTATTACTCAGTTTTTAAATCTTTCTTCAAATGAGTAGAGAAAGCAGA AGGAGTACAATCATCTAATTTATAATGATTCCTATAGTTCCAGAACTGAG GTCCATGGAACATTCATAGTGGGCAGAGAGCTTGATCAAAGTTAAAAGTG gcaacattgtttttataattttttctagcgATCATACAAAGTTCATAGCA TAATTTACAGCCTGTAGACCAGAAAAGTCAGCTTTTTGGTGCCGATAAAA GTTATCCCTCacttataaaaaagtaaacatgAATAAATGAGTGAAGTTTA GAAAAGTTATAGGTAGAACGATCAACTGCTTAACATCATCGACTTCTTTC TTTAGGAAACTACTCCTGCCACTGTCAACTCAAAATTTACATGGCTTCAT TCTTTTAATACTTCATCCCTCAAACACTGTCGAAATTCAAAGCAAGGACC AAACCTTATCACAGATGAAAAAGGTAATAATAGAATTTCTTTAATACTCT CACAATGACAACAATGATCTTATTTTGCTTTTTCAGCTATTCgggttttt tatttatttgattaccTGTTAAAATAATGAAAGCTGAATTTCACaataaa agatagtatttttttacttaatttattagttttttaatcaaattcttcaa tttttgacCTAAATACACGGTAATGTGATTTCCAAGTATTCCAAGGGTCA AGTGAATTCGAAACAACGAAAAACAATTTATTTATCCATATGGGTATATA TATATCAGGTCCTGATTCCACTTCCTAATGGACACCATCAGTAGTGCAGC ATATTAACAATTTATGCTCTCattatttgttcttttttctGCAGGGTATA TATGTCGACTTCAAGATGTCCAATATAATGGATGTTGTAATAAAAAGTCA AACTTCACAGAACAGTATTCTTGTTTGAGTTGCCAAAACAACCGATGTTG TAAGGTTTATGAGAATTGCATCTCATGCTGCTTGCATCCGCATAAGGTAT AGAAAATAACTTTAACCTTATTTCGGTGTTTAATAAGTATCTTGATGAAa cagtaccttaagggaagaaattttcgtgaAACAagtttttgcggaattta attttgcggtttttgaCAATTCCGCAAAACACGAATATTCTcgagattta aaaaatcacctccaaaagttgttttttagggcaaaatagaccatattcta aataaaaaattctcttaaccgagaaattaaattccgtgaaactgccgaat tttgagctgtgagtAGCGAAATTagattccgcgaaaatttcttccctcaa gGTACCGTATTGAACAATTTGAATAAGTTGGTATTAATAGCATTACAATC TCCAATCTACGGTCAATTATAATCAAAACTAGCCGTATGCacagcgtcgc acgctgcgtgtcccaatccagtgaATTACTACACATCTAAAAAAATCTAA CGAAAGAAAGATAGGCGCCGattgatgatttgattttgattataggaaat aaaggagaaaaaagataacattgcattgcaatttttaaccacaattaaat aaatagcttagcaaaagtatattttagatCTTCTTAACCATCGTGGCTAG ACATCGTGGTTAGACATTtaagggtgactttgaaagacttgaaAAGTtgt gaaagtgatagggagccgctattgtaaacagaaagttttaaaacgCATCT GAATAAGcattctttaaaatgacaaaaagttttgggaagaaggttgattt taacccatcaagctccaaactttgtgaatagaaaatagtatcttggggtc tcaaagttagtctagtggtaggaaatctgcttaaggtgcaaagagatgat ggttcaacgccatgaagagaaggctttgtagagctttgttagattttcga aaactttttacaaaacgttgtaaacacacacgtttaagtgtattaatata tagattagagagacaatttcaaagtgaaagtttgaaagacaCTCTTGCTA TACCCTTGAATGAAATAACTAATTTTACGCAAGCGGCTTACTGGTTCAAA AGAAtgcacattcttcaaaaagaccAAAGTTCAAACCGGGACGAAGTATt atataaaaatcttttaaaaagttttgaaagtgatagggagccgctattgt aaacagaaagttttaaagagcatctgaataagcattctttaaaatgacaa aaagttttgggaagcaggttgattttaacccatcaagctccaaactttgt gaatagaaaatagtattttggggtctcaaagttagtctagtggtaggaaa tctgcttaaggtgcaaagagatgatggttcaacgccatgaagaggaggct ttgtagaactttgttagattttcgaaaactttttacaaaacgttgtgaAC ACACacatttaagcgtattaatatatagattgatACTTTTAAACAAGGAA CTTGTTTTAAACTACACATAGAAATATGAGGAATGTCGCTGAAGACTGCA AAAGAAAcaactttaaaataatttaagtTCATATTGAAACTTATTCTATC AATTTCTTTTGACAGAGAAAATTATTGGAGTTGGTATTACAGCATGCGCA AACAGTACACAATCCGTTGTTGAGCTCAGTGCAAGATAATTTCGAATTGT GTTTACATAAATGTCGAACATCTTCAACGGTAAGTAGTATAATTTGTTTC AATAACTTATGTCTTGATCAAGTGTCAACTTTGATTTCTAGAGCCATGTT GCTCTAAAGCAGTTCAGTGCCCTCCTCTTATTGTAACAGCATAAATTTAA GTGAGAGAGGAAGTTAATCCCTAGTAAAACACCCTTcccacagacccagt aggattttttaagccagtggggtaaaaataacggactgaaactcgatggg gattgatattaccatattttttatggctggggatttaaattccattgttt taaaTTTAGTGGAGATGTGGAAAATACCACCATTTACTATTTTGgttgat tggtttatttgattattttcagtggggacaaaaatttgagaacaatTTTC CGCTAAGTACGATAATTTAGCCATTTTTCTTctgtgggaaggggtcccat aGGGTCTGTTAGAAGAGGGCGTATAGTAAAATCtatgaaatattttgatt tacttcgtaaaaaaaatataaaatccaGTGCACTAAGGATTTTACATTGG TATGATATGAACGGTATGTCTTTTTTGTGACACCTTTAATCTACCATTTA CAGAGCATTCGACAAGACAACACTTACCGAAATCTTCTTTACAAGTATTG TTTCGGAATGGAATCACCTCATATAACGCATGGTCGAAACAGATGAATTC TGGGGTGGTGTGATGGAATTAAGGCTAAAGAAAAAGGGAGGAGCGGAGGC TTTAATTTGTATGCTGTTGAGACCTGATTTTCACTTTGATGTGGGTGACT TGCACGATCGATCGAAATAACCAGCTTCGAATCAACGAATATGAAGAAAC TAAatcaaattctgaaaatcgtAAAGAAGCACGATAACACGGAAACCAAC CATTTGAGGAGACTGGAAGTTTCTTACTACGAATACAATCCGAATGTTTA AACTATTTATAACCACCCGGCGAAGGAAACGATAGAGAGAACTATAAAAT GTTCAACGAAACAACTTTTTTCTGAGCTACTCTCCCGCTTTCAAACATTC TTTTGAAGCTATTTTCGACACTGTAGCGTTTAATAAGTGCAGCTCTGGAG GCTATACGGACATGGTTATTTAGAATTTGGATATTCTAGAATACATATAA CATTACGCAATGTTAAGTTGTTGGGAAAACAAGGAGGGTAAACAAtgagt caactctctctaattcgaacctctattattcgaatctttctctaattcga actaaaacatcgGTCTCCTCAGCTGGGGAGTGGTATGAATTTCTCTCTGT Aatccgaatctttctctaattcaaagaaaatcgttggtcccttgaagatc gaattagagagagagtcgGTTGTATCAAGCTCTGctggaaaaagggaaaa ttccgCTTACGGATATTGCCAAGGAAAGTCACAACGAACTGTTTTCATGA GAACATTTTATCCTTTATTGATGCGATTCAATTTTTATGCAAGGTTTCAC CTCTTTCTGGGTTGATAATATGTAtggaaaaaattttgatggttaaaaaa aacaagatattTTGAGCATTAGACATTGGCGTTCGAAAAGAAATAGCTCC AACAATACTGTTTTATGTTTACAAATTCTTGACTTCAAATGACGAACGAC CCATTTGAGATGTTTTTTTAATCCATTCGTCCAAAgatattttgactttt cacAAGTACATTACATCTTGAGGCGGTTTTGTAAAATGATAACCTAATCC CTTTAAGAATTGTTTTGAATCAAAATACAGTTCTGTTTGCATCAAAGTCA ATTAGCCTAAAAATACTATTTGAACTACTCTTTTAGTTGCGCAACTCTGT TATTTAGATTCAGTTTGGTATTAGCTGGACAGGCCAAAGGATGGCTTATT TTTCTTTAGGGatcttatttttgttaattcCATTTGTCGCAGCTTCAGGT AAAAGTTAAATTCCACTTATTAAATTCCGAACTTTTGGTATGTTTTTTCT TACTCTTGTTTATTTacgaaaatgtttttattttcaaattttcaggcccg gcggaagcggggagactggagATTTCAGTCTCCCCACTCTTGAGCAAAAT GAggttttttctcaaattcctagcgaattttatcgCATTTTTAGCCTTCA ACCTCCTCACTTTTATTGTTGTTCCGCAGGGCCTGattttcatatttatt ttttccctgtAGTCTTCAGAAAATATTTAAACCGTTGCTAATACCGTTTG TTTTAtagtttcttttcaaaatttgtattcAAATCACCGGTTCAatacat tttttctttattcgATCATCAGTGTGCAATTCAGGATGTCAACGAACATT CAAGAAATTGGGTTGTTTTGCATTCCAAGAAGAAACCACTCCGAACCTGT TGATCACTGATCTGGTGGCCAATGAATTCACTTCTTCAGGGATACTTATT GACCAGTCCAAGGATCTAGAGGCTTCCATTTTGAGGTAAAGATAAGATGC TACATCTTATAAAATACTGAATTGTTAGATTTAGCTTATTTTTAGCTATT TGTGATTTAGTCCATTTCGGTTAATGTTCACAGGTTTTTTGATATCATTG TCATTTTCCCGTTTTCCTTTTAGCTTATTATGCAGATGTCTCACCAAAAC TAAAGCCATGGGCTACACCATCTTTGGACTAACCAATCGTGGTCAATGCC ATGCTGGTAACCAGGAAACCAAACTAAACAAGCTTGCTAAAGATGGTAGA TTTGCTCCGCCTCTTGCATGTTCGAATACCAATAAAGGTTTATGCAACGT TTTAAATGAAACGGAAAATTGTTTTGGCAAAGATATGCATTCATTTTATT ATCAGGTCATGAAGACAGGTAACTTTTACCCCtgtacctttttttcattt gaacTATGTTAATCACTACTATATAGTTTTCTAAGAATGTAATATTGTTG AATTATTGCGTTTGTCCAAAAATAAGTCAAAAGGATGGTGTATTCTTAAT GACTCatgaccactgacctttatataccctggacaaagcttctcaatccc agccaagcaaaatctttgatcggtgttttttcaaaattggtaccctaatg tcgacactactcgatagcggtgtaaatgcattgagagcgctaggtctact tttcctcaaattcttttgatgatgtagcggcgttagacgttaatttttag cattgcaatggcttctccttgggtaccaattctaaaaaaactccaatcaa agatggcagatattgcttggtccagggttatataaaggtcagtgctcaTG ACTGAAAGGTTTGGGTGACGTCTTATCTTCAAGCAGATTCTGCGGCGCAA TGCACTTATCCACTCTAAAGGCCATagctccgtaagagaatctcCCAAGG TTGGCGCACCGCTTTGAACTTTTTGATCCAGTTTTGGGATAAATACTtaa aatgagcttttgagccAAAAACACGTCAATTATTAACagaaacattagaa cccagtcgctttcggTTTCGTGTTTAAGTAAAAAGCGACTATTGAATGTT TTTGCTGAACAACTCAGGTCAGATCATCACAATCGCCATATTCCTTTAAA GCTGAGCGCGGTATGCGCCGATTGAacgatctgttatgagattagaGGGG TAACGCCCAACTCTTTTGTTAAACTTCagacaagaaataaaaagtGTGAT TTGATACCTTTAAAACATTCCAAAACTTATTGATGTCGCTAAAAGATAAA CCTTGCCGAAAGAAAGCTTCCCAAATATCCTTCAGTAGTAAAGTCTCATT TTATACATTTTCTTTACAGTCGATGGTCAATGGGGTTCTTGGTCCCTCTT CACGAAATGTAATACGACGTGTGGAAAGGCTTTTAAAACGCGTCAACGAT CGTGTGACCAACCTAAACCTCTGTATGGGGGCAAGATGTGCCAAGGGCCT TCTGTTGAAGTCCAAGAATGTCATTTGGGTGGATGTCCAAGTAAGTTAAT ACCGAATATAGCTCAGTGGGAGTTTAATAAATGGAGAATAAATGAACGGG TTGAATGACTACGAGAATATAAACCACCGGTCTGAGTCAGAATTTCAAAT TCTACTcttcataactcaaaattttagtGTCTTCCAGTGTTTTTGGTGGT TCTCAACTTTTTAACCGTAGGCTAAGCTGCTTTGCTGTAAAAAATCTCTT CGTCAaagtttcgcgattttcgccTCATTGCCTCATCCATTGCTTCGAGA AGCTATTTTCATATTCCAGCAATTGATTGTAATTGTTAATAGGTAGGGGG TTGATCTGCGCAAAGGTGGTTAGTATTCTTTAAATTTGCACTCTTTAACA CTTTATCATTCTTTCCAGGAGACGGTGGATATACAAGTTGGTCAACTTTC AGTTCATGCACTTTATCTTGCGGTGGAGGTGTTCAAAGCAGAACACGTTC TTGCACTCAACCACCACCTTTGAATGGAGGGAAGAAATGCTCTGGTCCTT CCAGTGAAACCAAGGCTTGTAATACACAACCTTGCCCAGGTATTTCTACA TaatattttttcagttttaattccgatcaaatttgaaatctgTGTTGTAT AAAATGTATGAAAAGATTCTATCAATTTACAACATTTATCCAAGCCAAAT TCTTTCTATTTTATGCTAGTGGTTTCGTACCAGAAAGCCTTTAGGacaaa actttggaaaatctttttacCTAAAAAGCACATAAAGGTTTTTTGGAAAG CTGTGCCTTAAGCGTCAAATATTCTCCCTGTACTACACTGCAACTTATCA AACTTTTTAGCACCTTGGACTTGCCAACAGAAAACTACGCAATGGGATGT AGATGGAAATGGAGATGCTCGTTATTTCGATCGCCATCAATTGAAATGTC CTTCTGCAACCGCTATCAACCTCCTTCGTCTCGAACGAGATAGCACTCTC ACCAAATATCGATTTGTATACAAGTGCTGTTCCATTGGAGCGACAGCATG CAACTCTACAAAATTGACACGCAACAGCTTTTCATATGATGGTACAGGGA GTGCGCGGTATTTAGATCGCCAATATGTCGAGTGTAACAAGCATTTGATC TCTTCTTTACGTCTTGAAACCAATCTATTGAATTTCCAAGGTGACAAAAT TCGTTATGTCTACAACTGCTGTCAAGCACCCAATCAACACCGAACATGTT ACTCGGCCATGACGAAATTCTCCGACGATGGAGGTGGCAGTGCCATTTAT CTTGATCGACAAAAGATCGAATGTAACCGAGAATTTTCGTTGTCGGCATT TCGTCTGGTGAGGGATACAAACACAATGAAACATTGGAGTTATAAATACA CTTGTTGTAAAACAACACCTAAGTCTTTGGTCAAAACTGTTGTTTAACAC ATCAATCCTCTATGATATTTTATAATACATATGAAGAAGTAATTTTCTTG TTCTCATCTTGAACCTTTATAACTCGATTGTCTACTAATAAACTTAACAA GTTTTCTATCTATTCCGGTTAGTTAACAAAAACTTATAAACCTTAATCCa tgtttcgaattttcaatAACTCGAACATATTTCAcggttccccgtgcgtg ttcgagttatgggaCTCAtctgtatttttttgtattctCTTGAAATTTCT CTCGAAATTTCTCTCGAGTGCGCTTCCAgtaattcttcatttttctttcc atATGATTTACTAAATTCTCATAACGAAAGACGATTGCACTGTATagttt tttaagtttattttagGAACCTTAGAAAAATAGTCGAATATGATGACTCA TAATGTAACTATTTTGATGATTTCCAAATGAATAATAAATTGTTCTAACC GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045611XLOC_045611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073485-exon-scaffold_93-1491911889:18913..19164TCONS_00073485-exon-scaffold_93-1491911889:18913..19164Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:18913..19164TCONS_00073485-exon-scaffold_93-1510915933:18913..19164Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:18913..19164TCONS_00073485-exon-scaffold_93-1575043694:18913..19164Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:25218..25335TCONS_00073485-exon-scaffold_93-1491911889:25218..25335Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:25218..25335TCONS_00073485-exon-scaffold_93-1510915933:25218..25335Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:25218..25335TCONS_00073485-exon-scaffold_93-1575043694:25218..25335Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:25707..25858TCONS_00073485-exon-scaffold_93-1491911889:25707..25858Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:25707..25858TCONS_00073485-exon-scaffold_93-1510915933:25707..25858Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:25707..25858TCONS_00073485-exon-scaffold_93-1575043694:25707..25858Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:27428..27541TCONS_00073485-exon-scaffold_93-1491911889:27428..27541Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:27428..27541TCONS_00073485-exon-scaffold_93-1510915933:27428..27541Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:27428..27541TCONS_00073485-exon-scaffold_93-1575043694:27428..27541Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:28116..28699TCONS_00073485-exon-scaffold_93-1491911889:28116..28699Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:28116..28699TCONS_00073485-exon-scaffold_93-1510915933:28116..28699Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:28116..28699TCONS_00073485-exon-scaffold_93-1575043694:28116..28699Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:29835..29997TCONS_00073485-exon-scaffold_93-1491911889:29835..29997Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:29835..29997TCONS_00073485-exon-scaffold_93-1510915933:29835..29997Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:29835..29997TCONS_00073485-exon-scaffold_93-1575043694:29835..29997Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:30136..30380TCONS_00073485-exon-scaffold_93-1491911889:30136..30380Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:30136..30380TCONS_00073485-exon-scaffold_93-1510915933:30136..30380Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:30136..30380TCONS_00073485-exon-scaffold_93-1575043694:30136..30380Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:31332..31502TCONS_00073485-exon-scaffold_93-1491911889:31332..31502Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:31332..31502TCONS_00073485-exon-scaffold_93-1510915933:31332..31502Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:31332..31502TCONS_00073485-exon-scaffold_93-1575043694:31332..31502Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:31881..32051TCONS_00073485-exon-scaffold_93-1491911889:31881..32051Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:31881..32051TCONS_00073485-exon-scaffold_93-1510915933:31881..32051Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:31881..32051TCONS_00073485-exon-scaffold_93-1575043694:31881..32051Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1491911889:32323..33364TCONS_00073485-exon-scaffold_93-1491911889:32323..33364Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1510915933:32323..33364TCONS_00073485-exon-scaffold_93-1510915933:32323..33364Clytia hemisphaericaexon
TCONS_00073485-exon-scaffold_93-1575043694:32323..33364TCONS_00073485-exon-scaffold_93-1575043694:32323..33364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:18913..33364 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32099 2.43085 0.455146 0.756011 2.10147 1.94905 2.88893 3.33204 3.73844 3.27171 3.68628 6.01486 15.368 13.6911 6.42737 6.6069 3.39787 3.48945 12.4292 9.05139 2.83287 4.25793 4.77087 5.41782 5.11233 4.36948 1.42206 3.19156 7.53386 6.75318
Blast
BLAST of TCONS_00073485 vs. Swiss-Prot (Human)
Match: CL049 (UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf49 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.182e-36
Identity = 70/149 (46.98%), Postives = 89/149 (59.73%), Query Frame = 1
Query:  274 NSKFTWLHSFNTSSLK----HCRNSKQGPNLITDEKGYICRLQDVQYNGCCNKKSNFTEQYSCLSCQNNRCCKVYENCISCCLHPHKRKLLELVLQHAQTVHNPLLSSVQDNFELCLHKCRTSSTSIRQDNTYRNLLYKYCFGMESPHI 708
            N    W   FN  +       CRNS QG +LITDE GY+C  +D+  NGCCN     T+QY C  C  N CC  YE C+SCCL P+K+ LLE  L  A      L  +V+D+FELCL KCRTSS S++ +NTYR+ + KYC+G   P +
Sbjct:   54 NQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPEL 202          
The following BLAST results are available for this feature:
BLAST of TCONS_00073485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL0492.182e-3646.98UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf... [more]
back to top