TCONS_00073483 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073483
Unique Name	TCONS_00073483
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2694

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_93:18647..33364+

transcript sequence

>TCONS_00073483 ID=TCONS_00073483|Name=TCONS_00073483|organism=Clytia hemisphaerica|type=transcript|length=2694bp
AAAAAATGGAATGGCTAGCATTTTGTATAGTCCCTACAACACTGTAAGAT
ATAAAATAACACcagaaaaataccttaaaagtTATAAGTAGATATCAAGG
TTAGAAAACACTTTGAATATACCTGTAAAACTGTAAAACTTTTGGTCtgt
tggttttttttttggttttttttatcGGTTCTGCTTCTTTCTGACAGTAC
GGCACTGGCTGTTTGGACTTTCCAAATTATTCTGAGGCGCCATATCTTTA
AAATATTAGCATTACGTAATATTACGTTTTGATAGGCCAATCAAAATGCT
TCACAGGAATTCCGAGAACTGAAAAAACTGTTATAGCTGAGATGGCGCCT
TATAATTTCACATGTAAACAATATGGCGGAAATTCCTAACTGGAAAACCA
CAGGAAGACAAAAAGCAATTTGGGGATGATTCTTCGTGGATTTTGGAAGA
GATGGACTCTGCTTTTATTCTTTGTTATCGTTCTAATCATATTGATTTTC
CAGCTATCTCAGAATAAGGAAACTACTCCTGCCACTGTCAACTCAAAATT
TACATGGCTTCATTCTTTTAATACTTCATCCCTCAAACACTGTCGAAATT
CAAAGCAAGGACCAAACCTTATCACAGATGAAAAAGGGTATATATGTCGA
CTTCAAGATGTCCAATATAATGGATGTTGTAATAAAAAGTCAAACTTCAC
AGAACAGTATTCTTGTTTGAGTTGCCAAAACAACCGATGTTGTAAGGTTT
ATGAGAATTGCATCTCATGCTGCTTGCATCCGCATAAGAGAAAATTATTG
GAGTTGGTATTACAGCATGCGCAAACAGTACACAATCCGTTGTTGAGCTC
AGTGCAAGATAATTTCGAATTGTGTTTACATAAATGTCGAACATCTTCAA
CGTGTGCAATTCAGGATGTCAACGAACATTCAAGAAATTGGGTTGTTTTG
CATTCCAAGAAGAAACCACTCCGAACCTGTTGATCACTGATCTGGTGGCC
AATGAATTCACTTCTTCAGGGATACTTATTGACCAGTCCAAGGATCTAGA
GGCTTCCATTTTGAGCTTATTATGCAGATGTCTCACCAAAACTAAAGCCA
TGGGCTACACCATCTTTGGACTAACCAATCGTGGTCAATGCCATGCTGGT
AACCAGGAAACCAAACTAAACAAGCTTGCTAAAGATGGTAGATTTGCTCC
GCCTCTTGCATGTTCGAATACCAATAAAGGTTTATGCAACGTTTTAAATG
AAACGGAAAATTGTTTTGGCAAAGATATGCATTCATTTTATTATCAGGTC
ATGAAGACAGTCGATGGTCAATGGGGTTCTTGGTCCCTCTTCACGAAATG
TAATACGACGTGTGGAAAGGCTTTTAAAACGCGTCAACGATCGTGTGACC
AACCTAAACCTCTGTATGGGGGCAAGATGTGCCAAGGGCCTTCTGTTGAA
GTCCAAGAATGTCATTTGGGTGGATGTCCAAGAGACGGTGGATATACAAG
TTGGTCAACTTTCAGTTCATGCACTTTATCTTGCGGTGGAGGTGTTCAAA
GCAGAACACGTTCTTGCACTCAACCACCACCTTTGAATGGAGGGAAGAAA
TGCTCTGGTCCTTCCAGTGAAACCAAGGCTTGTAATACACAACCTTGCCC
AGCACCTTGGACTTGCCAACAGAAAACTACGCAATGGGATGTAGATGGAA
ATGGAGATGCTCGTTATTTCGATCGCCATCAATTGAAATGTCCTTCTGCA
ACCGCTATCAACCTCCTTCGTCTCGAACGAGATAGCACTCTCACCAAATA
TCGATTTGTATACAAGTGCTGTTCCATTGGAGCGACAGCATGCAACTCTA
CAAAATTGACACGCAACAGCTTTTCATATGATGGTACAGGGAGTGCGCGG
TATTTAGATCGCCAATATGTCGAGTGTAACAAGCATTTGATCTCTTCTTT
ACGTCTTGAAACCAATCTATTGAATTTCCAAGGTGACAAAATTCGTTATG
TCTACAACTGCTGTCAAGCACCCAATCAACACCGAACATGTTACTCGGCC
ATGACGAAATTCTCCGACGATGGAGGTGGCAGTGCCATTTATCTTGATCG
ACAAAAGATCGAATGTAACCGAGAATTTTCGTTGTCGGCATTTCGTCTGG
TGAGGGATACAAACACAATGAAACATTGGAGTTATAAATACACTTGTTGT
AAAACAACACCTAAGTCTTTGGTCAAAACTGTTGTTTAACACATCAATCC
TCTATGATATTTTATAATACATATGAAGAAGTAATTTTCTTGTTCTCATC
TTGAACCTTTATAACTCGATTGTCTACTAATAAACTTAACAAGTTTTCTA
TCTATTCCGGTTAGTTAACAAAAACTTATAAACCTTAATCCatgtttcga
attttcaatAACTCGAACATATTTCAcggttccccgtgcgtgttcgagtt
atgggaCTCAtctgtatttttttgtattctCTTGAAATTTCTCTCGAAAT
TTCTCTCGAGTGCGCTTCCAgtaattcttcatttttctttccatATGATT
TACTAAATTCTCATAACGAAAGACGATTGCACTGTATagttttttaagtt
tattttagGAACCTTAGAAAAATAGTCGAATATGATGACTCATAATGTAA
CTATTTTGATGATTTCCAAATGAATAATAAATTGTTCTAACCGT

Run BLAST on NCBI

transcript from alignment at scaffold_93:18647..33364+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073483 ID=TCONS_00073483|Name=TCONS_00073483|organism=Clytia hemisphaerica|type=transcript|length=14718bp|location=Sequence derived from alignment at scaffold_93:18647..33364+ (Clytia hemisphaerica)
AAAAAATGGAATGGCTAGCATTTTGTATAGTCCCTACAACACTGTAAGAT
ATAAAATAACACcagaaaaataccttaaaagtTATAAGTAGATATCAAGG
TTAGAAAACACTTTGAATATACCTGTAAAACTGTAAAACTTTTGGTCtgt
tggttttttttttggttttttttatcGGTTCTGCTTCTTTCTGACAGTAC
GGCACTGGCTGTTTGGACTTTCCAAATTATTCTGAGGCGCCATATCTTTA
AAATATTAGCATTACGTAATATTACGTTTTGATAGGCCAATCAAAATGCT
TCACAGGAATTCCGAGAACTGAAAAAACTGTTATAGCTGAGATGGCGCCT
TATAATTTCACATGTAAACAATATGGCGGAAATTCCTAACTGGAAAACCA
CAGGAAGACAAAAAGCAATTTGGGGATGATTCTTCGTGGATTTTGGAAGA
GATGGACTCTGCTTTTATTCTTTGTTATCGTTCTAATCATATTGATTTTC
CAGCTATCTCAGAATAAGGTAATTGTTTCTTTTAAAACAACTTGCTTGCT
TGTGTGTTTTAAccttagttttttttttcattttatagctacactctttt
cttttttatatatagAACCAGTACTACTTTTACCCTTTTACCCCTAACGA
CCCCTAAgttgcttgaaattttcagactcaGCATTGTTGTTaaaacttgt
tcttatttttttgacaattttcagcCACTTTGGCTCTCTTGGGGGAGCTT
AGTCTGTATGtaaacttacaccacataagcaaaaatcccgcgagtatggt
atttttgaccctgtttgaatttgtttacatttggtttgaattttgtGCCA
AAAAAGCTGTTGATAAGGTTAGCAAATCAGGTTCGTGCACTTCCAATTGA
AACAACATATCACGTGATTTCAGCAAatgtttaacagccaatagaattct
gcgaaAAGAttatttggcatctacaaaaatacccagCTAACTCTTTTAAC
GACCCTGGACACTGCCGTACATTGCACGGTGGAGTCCGGTGGGCGTCCGA
TGGGTGTACGGTGGTATTTTAGGTTAGATCGAAAACACCGTACAACCCCA
CCGTACAGAATCCCACCGTACACGGAATTGCCACCGTACGATTGTCCGGt
ggatgtatgcatgctcacaAGGGTGTTGTGGTCAGTCGGAGTCAAGGAAA
AATTTGTAATCTTTCCGAAAAATAATTTAGTTTGTGTGAGCACAGAACGC
TAGTTCTATATCTCAAAAGAAGAAGCatgtgttttgaaaaagttcgaaac
aaacaAAGCTGTGGTGAAAATATCTGGCGTCTAATCAGTAGACGTCGAAA
AGCCGATAGTTACGCTGGGAATGAAGTTGATGAAATACTTTCCATTCGCT
CGGCTTTTGTTTCGACATTCGaggagtttttcttttagtttttgaCNTTT
TGTTTCGACATTCGaggagtttttcttttagtttttcttttagtttttga
tCGTTCGGCGATTGAGGGAATCAGAGAAAACACGCACCTAGTCCGCCCTT
ATTCCGCCTAAGGTGTATACAAGAAGGCCGCCTGACATATTTTGTACGGT
GGGAATTCAGAAACCTGATCGACTTCccaccgtacaatgtacggcggtAT
ATTTCGTGTACANGGCTTAACTTTAGTTTTTTTAGTATACCTTGCTTATT
GGTAttaaaaatttcgcgattcgctATTTTTTTTCGAGGAAATGTATTTT
GTGTGTATTAATTTAGCGATTGCcagtttttggaaatttttgcgTGTATT
AGATTTCTTTGCAATTTACTAAATTTGGCATTCTCAAAAAGCGGGaataa
agcaagaaaatgactgatttcgCTTGAAACTCAACGTATTAGGTGGAAAC
ATaccaaaaatagtaacaaaactagtgacaaaatagtacacaagtgtttc
aaccggtattccaacgaagccatattttggttggtACAGAAATTTCACCC
GCTCAAAatccaaaacaacaaaatggtcaatctcactaaagcaaaacatt
gcggccacggcatttccctggataaaaattctggtcacgtgaccatccgt
gattttagaccaatgaaaacgcttcatatccccggattaaagttgtgtct
acactaacacacgggaaatggctagaaaaagagagaaaaagagagaaaaa
accgggggtcaaattaaatttttctcccttcttgcagCACATACAGTATG
AAAggctttaagaggccatttatttaagaataAGGGGTGTTacatcataa
ataaattatgtaagtaagtgatattttaagtaaaatgatcattaacaatt
ttattttgaagtttgtttttaaaaacaaaacccccgtgctagatgatagt
ctcattttcttaacttatggacccatttggaagtctttgtaatacagatc
atttggcagtgtagttgcagcctacagtatacaagaattggaatctaaag
tctgaagtcgtaactccttgccagtgaccctgcagagaaatttttagttg
gcagacactgactttaggttggtttggaaatcgttttattttgaaatgta
atcttcactttagatgaatactttaatttatttggattcatgaaaggttc
aaggtttgtttactttttatttcaaattatctcattgaaaaacaaagatt
tttgatagctatcagcgtgggcttggccgccattttgaatttcgatttct
tTTCTTCTGTagtcggcaatttagaggttgttcgtaatacgcgatttggc
ttacgcgtaacacttgtgagTAATTAAGTGTTACAAAtaagtattttcaa
ttttcggcctattttgaaaatttttcgcgtgtatttaatttcacaatttt
tattttttttagatttaaacagtattaaattttgcaaaatttgaccTAAA
AAATTGCCATTACATACTAAATACCATTACAAATATggtatatatacgtt
ttttgtttaatttttgtttgggaGAATGTGACAACCTATTATTGTCTCAG
TTCTGCATATTAAATAGCTCCATCCATTCAGGCCAGAAATTATCCGCTCC
GTATTAAGGAAACGAAACCCTAATACTGCGCAGGAAGATTCACAGTATTA
TGTATTGCATGCTGCTAATTTGGGAGAATGCTAGAGTGCcaattttgaac
aaaacttattTATAGGTAATGTCTAATTTCCCGCTTGTTTTAATTGACAT
CCACTGAAGTGTGGAGTAATTATACTTAAGCCAGTATACATGGATTCTGT
GAAAATGTACTCATTTGAGTGTACTTATTTTTTGAATGGTTCTTCTAGAC
CTTTCCCTATTTAAGATATTatgttgaatatttttcaattttaatttcaa
tttcaatatcttttataatagaaataataataacaaagctttacaggttt
gcaggccacaGTGaggacacatgggcctctataaaccgcttgtacttttt
acaataatctttttgaaatagagtttttttcgcgggctcccccggacttt
ccattttgtgttgtctcctttgattttagcatttttttcggcttccttac
accattctttgattatttgtctttcatttttggtcaaatcctctgtcact
cggtaaggaaagccttttgcttttgttattgcttgcaacactgtgttcgt
gtcctcttcgttcgtaaatttgactttgattggtcggtatctcgctttat
cttctctttctttcgtaaatttcccAATCCACTGCGTCTCAGTAGTCTTT
ATATTCCTCAGACAGAGCCGCCaaccaataattttgtcatggatAAATTC
TACATCCTTGATTTTCGTTTCTTCTTCAGATTCATCTGTTGATTCATCTA
TCCCATGAAAAATAAGGTTGCATGCTGTCGATCGAATCAGCTGCTCCTCC
tgcttttctttttgaattgcatctccaatgtttttctcgatgtgtttgaa
tgtgattttagcgtagctcattggtggtcttccctcttctttcttttcga
tgatgTTTTCAATCTTCTTCTCAAGCGTGGTTTTTCTGGTGTcgatagtt
tctttcatttcgttgaccataacattgacgtcttgtgctttcaaatggtt
tatttcttcgtcctgcttttcattatattctcacaggctttaatttcgtt
tttgaattctttaatttttaatgtttcatttgaattatacctttccatta
cctgtggtgtgattttggtacagttttgACACTGGAAACTTCTTGATTTG
TATGACAAGCATATCTGGATTTGGTAAAGTGGCAGTTCTGTACAAAGATA
ATGGACTAAGCGGTGGCACTTCCTGTATTGTAGGGTATCTTTTGGtgcgt
tttcttcatttatgatgcactttgacgggctgcaaaagtcgtttattgat
ggtgatttttgatttttttcctggatttttttccgccatctttgtgcatt
tttcagacGACAACCGTTCAGTTTTGTATTTGACGTCAGAATGAATATAT
TAGTTAAGTTAAGTTAAGAATAGGATGGAAGATACAAGCCCATGAATAAA
AATATCCCCAGAATGTACCAAAATGACTTTTCAGagatgttttaaaaata
tatttttttgcgacatctttgtcaattttaggaatttttggaCCTTATTT
CATAAATGACATATTTTTCCCTGATGATTCCAATGATATAGGTTTCGGGA
GTAATTTGGGATGAAATATTCCAGAAAATCAAGATTTGCAGATTCTTTAA
AAtggttttattttattaaattttcaaatttgaatttcaaagagTAGAAA
AGTATGAagaattccaaaatttttgattttgggtGACATTAAAAGTGGAA
TATTTCATCCTATCCACTCTTTCGGTGAATATATTGCTATTTTCTGAAAG
ATACACTCTTTACTATTACACTTATGTAATTTTCATCCTTAAAATAATAT
CCAttagtttttaaaacatttttttggacaacccgttttttatcaatatt
tttggaatatctcatCCTTTTCTACTCCTTTCATCATTTTGCTTACATTT
TCTAATAATTTATATGGTACACTATCTGAGAGTATAATTTCAAAAGGGAA
TCTTTTATAGATAAGGAGTAATTAACTGTGGAATTTCTCATCCATCCGCA
AATAAGAAAGCTCTCATCCTAGATTACTCCTAATTTTGTCCTTAAATTGT
AGCTGTTCAACTCAACCAATTAAAGCCGgattaaaaaaatcgaaatattt
catcatatctctttttctcaaaataaattgaaatactCATGTAAAAGTTT
TCATTAAGAAAGGTTGTCTTAAATAGGAGATACCCAAAAAAGACAATTTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtaagaaacaaatgactaattttaatagatcgtcaat
atttgtgttctgaatgattgtttaatggtcacgtcacgtagatatcaatt
ataaatgtgttaaatgcatatccaggtaggtccataaaagtatcacttgt
tttgtcCTTAAATTGTAGCTGTTCAACTCATCCGATTAAAGCcagactga
aaaaatctttttctctaaataaattgaaatactCATGTAAAAGCTTTCAT
TAAGAAAGGATATCTTAAACAGGAGTTACCCAAAAAAGACAATTTAGTAC
attctaaaaaaacatttatctaGACCAGTTATCCCACAACAcaactagga
gaaaaaaaaagcataaaatgataTGAAGtattttatcaataaaagtaaaa
aactaaaaatagtATGTGGGGAAAATAAGTTAAGCAAAATTTGTATATAA
ATCAGAAAACTATAATAATTATTACTCAGTTTTTAAATCTTTCTTCAAAT
GAGTAGAGAAAGCAGAAGGAGTACAATCATCTAATTTATAATGATTCCTA
TAGTTCCAGAACTGAGGTCCATGGAACATTCATAGTGGGCAGAGAGCTTG
ATCAAAGTTAAAAGTGgcaacattgtttttataattttttctagcgATCA
TACAAAGTTCATAGCATAATTTACAGCCTGTAGACCAGAAAAGTCAGCTT
TTTGGTGCCGATAAAAGTTATCCCTCacttataaaaaagtaaacatgAAT
AAATGAGTGAAGTTTAGAAAAGTTATAGGTAGAACGATCAACTGCTTAAC
ATCATCGACTTCTTTCTTTAGGAAACTACTCCTGCCACTGTCAACTCAAA
ATTTACATGGCTTCATTCTTTTAATACTTCATCCCTCAAACACTGTCGAA
ATTCAAAGCAAGGACCAAACCTTATCACAGATGAAAAAGGTAATAATAGA
ATTTCTTTAATACTCTCACAATGACAACAATGATCTTATTTTGCTTTTTC
AGCTATTCgggttttttatttatttgattaccTGTTAAAATAATGAAAGC
TGAATTTCACaataaaagatagtatttttttacttaatttattagttttt
taatcaaattcttcaatttttgacCTAAATACACGGTAATGTGATTTCCA
AGTATTCCAAGGGTCAAGTGAATTCGAAACAACGAAAAACAATTTATTTA
TCCATATGGGTATATATATATCAGGTCCTGATTCCACTTCCTAATGGACA
CCATCAGTAGTGCAGCATATTAACAATTTATGCTCTCattatttgttctt
ttttctGCAGGGTATATATGTCGACTTCAAGATGTCCAATATAATGGATG
TTGTAATAAAAAGTCAAACTTCACAGAACAGTATTCTTGTTTGAGTTGCC
AAAACAACCGATGTTGTAAGGTTTATGAGAATTGCATCTCATGCTGCTTG
CATCCGCATAAGGTATAGAAAATAACTTTAACCTTATTTCGGTGTTTAAT
AAGTATCTTGATGAAacagtaccttaagggaagaaattttcgtgaAACAa
gtttttgcggaatttaattttgcggtttttgaCAATTCCGCAAAACACGA
ATATTCTcgagatttaaaaaatcacctccaaaagttgttttttagggcaa
aatagaccatattctaaataaaaaattctcttaaccgagaaattaaattc
cgtgaaactgccgaattttgagctgtgagtAGCGAAATTagattccgcga
aaatttcttccctcaagGTACCGTATTGAACAATTTGAATAAGTTGGTAT
TAATAGCATTACAATCTCCAATCTACGGTCAATTATAATCAAAACTAGCC
GTATGCacagcgtcgcacgctgcgtgtcccaatccagtgaATTACTACAC
ATCTAAAAAAATCTAACGAAAGAAAGATAGGCGCCGattgatgatttgat
tttgattataggaaataaaggagaaaaaagataacattgcattgcaattt
ttaaccacaattaaataaatagcttagcaaaagtatattttagatCTTCT
TAACCATCGTGGCTAGACATCGTGGTTAGACATTtaagggtgactttgaa
agacttgaaAAGTtgtgaaagtgatagggagccgctattgtaaacagaaa
gttttaaaacgCATCTGAATAAGcattctttaaaatgacaaaaagttttg
ggaagaaggttgattttaacccatcaagctccaaactttgtgaatagaaa
atagtatcttggggtctcaaagttagtctagtggtaggaaatctgcttaa
ggtgcaaagagatgatggttcaacgccatgaagagaaggctttgtagagc
tttgttagattttcgaaaactttttacaaaacgttgtaaacacacacgtt
taagtgtattaatatatagattagagagacaatttcaaagtgaaagtttg
aaagacaCTCTTGCTATACCCTTGAATGAAATAACTAATTTTACGCAAGC
GGCTTACTGGTTCAAAAGAAtgcacattcttcaaaaagaccAAAGTTCAA
ACCGGGACGAAGTATtatataaaaatcttttaaaaagttttgaaagtgat
agggagccgctattgtaaacagaaagttttaaagagcatctgaataagca
ttctttaaaatgacaaaaagttttgggaagcaggttgattttaacccatc
aagctccaaactttgtgaatagaaaatagtattttggggtctcaaagtta
gtctagtggtaggaaatctgcttaaggtgcaaagagatgatggttcaacg
ccatgaagaggaggctttgtagaactttgttagattttcgaaaacttttt
acaaaacgttgtgaACACACacatttaagcgtattaatatatagattgat
ACTTTTAAACAAGGAACTTGTTTTAAACTACACATAGAAATATGAGGAAT
GTCGCTGAAGACTGCAAAAGAAAcaactttaaaataatttaagtTCATAT
TGAAACTTATTCTATCAATTTCTTTTGACAGAGAAAATTATTGGAGTTGG
TATTACAGCATGCGCAAACAGTACACAATCCGTTGTTGAGCTCAGTGCAA
GATAATTTCGAATTGTGTTTACATAAATGTCGAACATCTTCAACGGTAAG
TAGTATAATTTGTTTCAATAACTTATGTCTTGATCAAGTGTCAACTTTGA
TTTCTAGAGCCATGTTGCTCTAAAGCAGTTCAGTGCCCTCCTCTTATTGT
AACAGCATAAATTTAAGTGAGAGAGGAAGTTAATCCCTAGTAAAACACCC
TTcccacagacccagtaggattttttaagccagtggggtaaaaataacgg
actgaaactcgatggggattgatattaccatattttttatggctggggat
ttaaattccattgttttaaaTTTAGTGGAGATGTGGAAAATACCACCATT
TACTATTTTGgttgattggtttatttgattattttcagtggggacaaaaa
tttgagaacaatTTTCCGCTAAGTACGATAATTTAGCCATTTTTCTTctg
tgggaaggggtcccataGGGTCTGTTAGAAGAGGGCGTATAGTAAAATCt
atgaaatattttgatttacttcgtaaaaaaaatataaaatccaGTGCACT
AAGGATTTTACATTGGTATGATATGAACGGTATGTCTTTTTTGTGACACC
TTTAATCTACCATTTACAGAGCATTCGACAAGACAACACTTACCGAAATC
TTCTTTACAAGTATTGTTTCGGAATGGAATCACCTCATATAACGCATGGT
CGAAACAGATGAATTCTGGGGTGGTGTGATGGAATTAAGGCTAAAGAAAA
AGGGAGGAGCGGAGGCTTTAATTTGTATGCTGTTGAGACCTGATTTTCAC
TTTGATGTGGGTGACTTGCACGATCGATCGAAATAACCAGCTTCGAATCA
ACGAATATGAAGAAACTAAatcaaattctgaaaatcgtAAAGAAGCACGA
TAACACGGAAACCAACCATTTGAGGAGACTGGAAGTTTCTTACTACGAAT
ACAATCCGAATGTTTAAACTATTTATAACCACCCGGCGAAGGAAACGATA
GAGAGAACTATAAAATGTTCAACGAAACAACTTTTTTCTGAGCTACTCTC
CCGCTTTCAAACATTCTTTTGAAGCTATTTTCGACACTGTAGCGTTTAAT
AAGTGCAGCTCTGGAGGCTATACGGACATGGTTATTTAGAATTTGGATAT
TCTAGAATACATATAACATTACGCAATGTTAAGTTGTTGGGAAAACAAGG
AGGGTAAACAAtgagtcaactctctctaattcgaacctctattattcgaa
tctttctctaattcgaactaaaacatcgGTCTCCTCAGCTGGGGAGTGGT
ATGAATTTCTCTCTGTAatccgaatctttctctaattcaaagaaaatcgt
tggtcccttgaagatcgaattagagagagagtcgGTTGTATCAAGCTCTG
ctggaaaaagggaaaattccgCTTACGGATATTGCCAAGGAAAGTCACAA
CGAACTGTTTTCATGAGAACATTTTATCCTTTATTGATGCGATTCAATTT
TTATGCAAGGTTTCACCTCTTTCTGGGTTGATAATATGTAtggaaaaaat
tttgatggttaaaaaaaacaagatattTTGAGCATTAGACATTGGCGTTC
GAAAAGAAATAGCTCCAACAATACTGTTTTATGTTTACAAATTCTTGACT
TCAAATGACGAACGACCCATTTGAGATGTTTTTTTAATCCATTCGTCCAA
AgatattttgacttttcacAAGTACATTACATCTTGAGGCGGTTTTGTAA
AATGATAACCTAATCCCTTTAAGAATTGTTTTGAATCAAAATACAGTTCT
GTTTGCATCAAAGTCAATTAGCCTAAAAATACTATTTGAACTACTCTTTT
AGTTGCGCAACTCTGTTATTTAGATTCAGTTTGGTATTAGCTGGACAGGC
CAAAGGATGGCTTATTTTTCTTTAGGGatcttatttttgttaattcCATT
TGTCGCAGCTTCAGGTAAAAGTTAAATTCCACTTATTAAATTCCGAACTT
TTGGTATGTTTTTTCTTACTCTTGTTTATTTacgaaaatgtttttatttt
caaattttcaggcccggcggaagcggggagactggagATTTCAGTCTCCC
CACTCTTGAGCAAAATGAggttttttctcaaattcctagcgaattttatc
gCATTTTTAGCCTTCAACCTCCTCACTTTTATTGTTGTTCCGCAGGGCCT
GattttcatatttattttttccctgtAGTCTTCAGAAAATATTTAAACCG
TTGCTAATACCGTTTGTTTTAtagtttcttttcaaaatttgtattcAAAT
CACCGGTTCAatacattttttctttattcgATCATCAGTGTGCAATTCAG
GATGTCAACGAACATTCAAGAAATTGGGTTGTTTTGCATTCCAAGAAGAA
ACCACTCCGAACCTGTTGATCACTGATCTGGTGGCCAATGAATTCACTTC
TTCAGGGATACTTATTGACCAGTCCAAGGATCTAGAGGCTTCCATTTTGA
GGTAAAGATAAGATGCTACATCTTATAAAATACTGAATTGTTAGATTTAG
CTTATTTTTAGCTATTTGTGATTTAGTCCATTTCGGTTAATGTTCACAGG
TTTTTTGATATCATTGTCATTTTCCCGTTTTCCTTTTAGCTTATTATGCA
GATGTCTCACCAAAACTAAAGCCATGGGCTACACCATCTTTGGACTAACC
AATCGTGGTCAATGCCATGCTGGTAACCAGGAAACCAAACTAAACAAGCT
TGCTAAAGATGGTAGATTTGCTCCGCCTCTTGCATGTTCGAATACCAATA
AAGGTTTATGCAACGTTTTAAATGAAACGGAAAATTGTTTTGGCAAAGAT
ATGCATTCATTTTATTATCAGGTCATGAAGACAGGTAACTTTTACCCCtg
tacctttttttcatttgaacTATGTTAATCACTACTATATAGTTTTCTAA
GAATGTAATATTGTTGAATTATTGCGTTTGTCCAAAAATAAGTCAAAAGG
ATGGTGTATTCTTAATGACTCatgaccactgacctttatataccctggac
aaagcttctcaatcccagccaagcaaaatctttgatcggtgttttttcaa
aattggtaccctaatgtcgacactactcgatagcggtgtaaatgcattga
gagcgctaggtctacttttcctcaaattcttttgatgatgtagcggcgtt
agacgttaatttttagcattgcaatggcttctccttgggtaccaattcta
aaaaaactccaatcaaagatggcagatattgcttggtccagggttatata
aaggtcagtgctcaTGACTGAAAGGTTTGGGTGACGTCTTATCTTCAAGC
AGATTCTGCGGCGCAATGCACTTATCCACTCTAAAGGCCATagctccgta
agagaatctcCCAAGGTTGGCGCACCGCTTTGAACTTTTTGATCCAGTTT
TGGGATAAATACTtaaaatgagcttttgagccAAAAACACGTCAATTATT
AACagaaacattagaacccagtcgctttcggTTTCGTGTTTAAGTAAAAA
GCGACTATTGAATGTTTTTGCTGAACAACTCAGGTCAGATCATCACAATC
GCCATATTCCTTTAAAGCTGAGCGCGGTATGCGCCGATTGAacgatctgt
tatgagattagaGGGGTAACGCCCAACTCTTTTGTTAAACTTCagacaag
aaataaaaagtGTGATTTGATACCTTTAAAACATTCCAAAACTTATTGAT
GTCGCTAAAAGATAAACCTTGCCGAAAGAAAGCTTCCCAAATATCCTTCA
GTAGTAAAGTCTCATTTTATACATTTTCTTTACAGTCGATGGTCAATGGG
GTTCTTGGTCCCTCTTCACGAAATGTAATACGACGTGTGGAAAGGCTTTT
AAAACGCGTCAACGATCGTGTGACCAACCTAAACCTCTGTATGGGGGCAA
GATGTGCCAAGGGCCTTCTGTTGAAGTCCAAGAATGTCATTTGGGTGGAT
GTCCAAGTAAGTTAATACCGAATATAGCTCAGTGGGAGTTTAATAAATGG
AGAATAAATGAACGGGTTGAATGACTACGAGAATATAAACCACCGGTCTG
AGTCAGAATTTCAAATTCTACTcttcataactcaaaattttagtGTCTTC
CAGTGTTTTTGGTGGTTCTCAACTTTTTAACCGTAGGCTAAGCTGCTTTG
CTGTAAAAAATCTCTTCGTCAaagtttcgcgattttcgccTCATTGCCTC
ATCCATTGCTTCGAGAAGCTATTTTCATATTCCAGCAATTGATTGTAATT
GTTAATAGGTAGGGGGTTGATCTGCGCAAAGGTGGTTAGTATTCTTTAAA
TTTGCACTCTTTAACACTTTATCATTCTTTCCAGGAGACGGTGGATATAC
AAGTTGGTCAACTTTCAGTTCATGCACTTTATCTTGCGGTGGAGGTGTTC
AAAGCAGAACACGTTCTTGCACTCAACCACCACCTTTGAATGGAGGGAAG
AAATGCTCTGGTCCTTCCAGTGAAACCAAGGCTTGTAATACACAACCTTG
CCCAGGTATTTCTACATaatattttttcagttttaattccgatcaaattt
gaaatctgTGTTGTATAAAATGTATGAAAAGATTCTATCAATTTACAACA
TTTATCCAAGCCAAATTCTTTCTATTTTATGCTAGTGGTTTCGTACCAGA
AAGCCTTTAGGacaaaactttggaaaatctttttacCTAAAAAGCACATA
AAGGTTTTTTGGAAAGCTGTGCCTTAAGCGTCAAATATTCTCCCTGTACT
ACACTGCAACTTATCAAACTTTTTAGCACCTTGGACTTGCCAACAGAAAA
CTACGCAATGGGATGTAGATGGAAATGGAGATGCTCGTTATTTCGATCGC
CATCAATTGAAATGTCCTTCTGCAACCGCTATCAACCTCCTTCGTCTCGA
ACGAGATAGCACTCTCACCAAATATCGATTTGTATACAAGTGCTGTTCCA
TTGGAGCGACAGCATGCAACTCTACAAAATTGACACGCAACAGCTTTTCA
TATGATGGTACAGGGAGTGCGCGGTATTTAGATCGCCAATATGTCGAGTG
TAACAAGCATTTGATCTCTTCTTTACGTCTTGAAACCAATCTATTGAATT
TCCAAGGTGACAAAATTCGTTATGTCTACAACTGCTGTCAAGCACCCAAT
CAACACCGAACATGTTACTCGGCCATGACGAAATTCTCCGACGATGGAGG
TGGCAGTGCCATTTATCTTGATCGACAAAAGATCGAATGTAACCGAGAAT
TTTCGTTGTCGGCATTTCGTCTGGTGAGGGATACAAACACAATGAAACAT
TGGAGTTATAAATACACTTGTTGTAAAACAACACCTAAGTCTTTGGTCAA
AACTGTTGTTTAACACATCAATCCTCTATGATATTTTATAATACATATGA
AGAAGTAATTTTCTTGTTCTCATCTTGAACCTTTATAACTCGATTGTCTA
CTAATAAACTTAACAAGTTTTCTATCTATTCCGGTTAGTTAACAAAAACT
TATAAACCTTAATCCatgtttcgaattttcaatAACTCGAACATATTTCA
cggttccccgtgcgtgttcgagttatgggaCTCAtctgtatttttttgta
ttctCTTGAAATTTCTCTCGAAATTTCTCTCGAGTGCGCTTCCAgtaatt
cttcatttttctttccatATGATTTACTAAATTCTCATAACGAAAGACGA
TTGCACTGTATagttttttaagtttattttagGAACCTTAGAAAAATAGT
CGAATATGATGACTCATAATGTAACTATTTTGATGATTTCCAAATGAATA
ATAAATTGTTCTAACCGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045611	XLOC_045611	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_93	supercontig	scaffold_93:18647..33364 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0452686	0	0	0	0.0459146	0.0847533	0.0824031	0.062575	0	0.725167	0.979473	10.6452	22.4358	0	0.151864	0.0638924	0	17.4353	15.7584	0.127049	0	0	0.0875934	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00073483 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.116e-30
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 2

Query: 1307 TVDGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWT 1663
            TV+G W +W+ +++C+  C +  + R+R C+ P+P YGG  C GPS+E QEC++  CP DG ++ WS ++ C+ +CGGG   RTRSC+ P P  GG  C G  +E   CNTQPCP  W+
Sbjct:  782 TVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPESWS 900

HSP 2 Score: 105.145 bits (261), Expect = 6.401e-23
Identity = 68/192 (35.42%), Postives = 98/192 (51.04%), Query Frame = 2

Query: 1313 DGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQEC--HLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWTCQQKTTQW------DVDGNGDARYFDRHQLKCPSATA-INLLRLERDSTLTKYRFVYKCCSIGATACNSTKLT 1861
            +G W  W+ ++ C+TTCG  F+ RQRSC  P P +GG++C G + E + C  HL  CP    +T W  +  CT  CGGG+Q+R R C        G  C+G + E ++CNT PCP      +KTT W      ++  NG   Y  R +  C +  A  NLL + R     +Y     C S G + C++  L+
Sbjct:  595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLL-CPPHMFWTGWGPWERCTAQCGGGIQARRRIC------ENGPDCAGCNVEYQSCNTNPCPE----LKKTTPWTPWTPVNISDNG-GHYEQRFRYTCKARLADPNLLEVGRQRIEMRY-----CSSDGTSGCSTDGLS 769

HSP 3 Score: 99.7525 bits (247), Expect = 3.343e-21
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 2

Query: 1307 TVDGQWGSWSLFTKCNTTCGKAFKT---RQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACN 1636
            TVDG +G WS +T C  T G A  +   R RSCD P P  GG  C+GP +E+       C R+GG+T W+++S C+ +CG G Q R RSC+ P P +GG+ C G + E + CN
Sbjct:  538 TVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEI-----ANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCN 645

The following BLAST results are available for this feature:

BLAST of TCONS_00073483 vs. Swiss-Prot (Human)

BLAST of TCONS_00073483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
SEM5A	7.116e-30	45.38	Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3	[more]

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TCONS_00073483 (transcript) - C. hemisphaerica

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