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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073483 ID=TCONS_00073483|Name=TCONS_00073483|organism=Clytia hemisphaerica|type=transcript|length=2694bpRun BLAST on NCBI transcript from alignment at scaffold_93:18647..33364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073483 ID=TCONS_00073483|Name=TCONS_00073483|organism=Clytia hemisphaerica|type=transcript|length=14718bp|location=Sequence derived from alignment at scaffold_93:18647..33364+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073483 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 7.116e-30 Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 2
Query: 1307 TVDGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWT 1663
TV+G W +W+ +++C+ C + + R+R C+ P+P YGG C GPS+E QEC++ CP DG ++ WS ++ C+ +CGGG RTRSC+ P P GG C G +E CNTQPCP W+
Sbjct: 782 TVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPESWS 900 HSP 2 Score: 105.145 bits (261), Expect = 6.401e-23 Identity = 68/192 (35.42%), Postives = 98/192 (51.04%), Query Frame = 2
Query: 1313 DGQWGSWSLFTKCNTTCGKAFKTRQRSCDQPKPLYGGKMCQGPSVEVQEC--HLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACNTQPCPAPWTCQQKTTQW------DVDGNGDARYFDRHQLKCPSATA-INLLRLERDSTLTKYRFVYKCCSIGATACNSTKLT 1861
+G W W+ ++ C+TTCG F+ RQRSC P P +GG++C G + E + C HL CP +T W + CT CGGG+Q+R R C G C+G + E ++CNT PCP +KTT W ++ NG Y R + C + A NLL + R +Y C S G + C++ L+
Sbjct: 595 NGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLL-CPPHMFWTGWGPWERCTAQCGGGIQARRRIC------ENGPDCAGCNVEYQSCNTNPCPE----LKKTTPWTPWTPVNISDNG-GHYEQRFRYTCKARLADPNLLEVGRQRIEMRY-----CSSDGTSGCSTDGLS 769 HSP 3 Score: 99.7525 bits (247), Expect = 3.343e-21 Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 2
Query: 1307 TVDGQWGSWSLFTKCNTTCGKAFKT---RQRSCDQPKPLYGGKMCQGPSVEVQECHLGGCPRDGGYTSWSTFSSCTLSCGGGVQSRTRSCTQPPPLNGGKKCSGPSSETKACN 1636
TVDG +G WS +T C T G A + R RSCD P P GG C+GP +E+ C R+GG+T W+++S C+ +CG G Q R RSC+ P P +GG+ C G + E + CN
Sbjct: 538 TVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEI-----ANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCN 645 The following BLAST results are available for this feature:
BLAST of TCONS_00073483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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