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TCONS_00073477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073477
Unique NameTCONS_00073477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073477 ID=TCONS_00073477|Name=TCONS_00073477|organism=Clytia hemisphaerica|type=transcript|length=316bp
GCAGCCACCGAGGGCAAATGATGGAAAAGCCGTTCCGGAGacccccctca
gctggaaatggCCTAGGCGTTCcgggaaaatttcataaagtttgcTCCTG
GAAATGCATAGCCGTtccctggaaaaattttgaaagttctttaacaattc
tccagctggaaattcaCACGCGTTCCAGGCTGATTTTACGGAACTTTTTC
ACAGCTGGTAGAATTTTGGAGCTGTTCCTTCAACCAACTAGCTGGAAATC
TGGAGCCATTCCCGGGACGATTTCtagcttctttttctttttttctgagc
CGTTCCTTGAGTTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_92:71759..72074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073477 ID=TCONS_00073477|Name=TCONS_00073477|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_92:71759..72074 (Clytia hemisphaerica)
GCTAACTCAAGGAACGgctcagaaaaaaagaaaaagaagctaGAAATCGT CCCGGGAATGGCTCCAGATTTCCAGCTAGTTGGTTGAAGGAACAGCTCCA AAATTCTACCAGCTGTGAAAAAGTTCCGTAAAATCAGCCTGGAACGCGTG tgaatttccagctggagaattgttaaagaactttcaaaatttttccaggg aACGGCTATGCATTTCCAGGAgcaaactttatgaaattttcccgGAACGC CTAGGccatttccagctgaggggggtCTCCGGAACGGCTTTTCCATCATT TGCCCTCGGTGGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045605XLOC_045605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073477-exon-scaffold_92-1491911889:71759..72074TCONS_00073477-exon-scaffold_92-1491911889:71759..72074Clytia hemisphaericaexon
TCONS_00073477-exon-scaffold_92-1510915933:71759..72074TCONS_00073477-exon-scaffold_92-1510915933:71759..72074Clytia hemisphaericaexon
TCONS_00073477-exon-scaffold_92-1575043694:71759..72074TCONS_00073477-exon-scaffold_92-1575043694:71759..72074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:71759..72074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.51303 0.375341 0.494688 0 0 0 0 1.01415 0.621692 0.508241 1.73976 2.03837 4.41125 1.41917 1.24813 0.296284 1.17892 2.03759 0.866781 1.88394 3.64899 0.993536 0.849557 0 0 1.76661 2.67724 3.29174 3.24943
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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