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TCONS_00073475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073475
Unique NameTCONS_00073475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073475 ID=TCONS_00073475|Name=TCONS_00073475|organism=Clytia hemisphaerica|type=transcript|length=694bp
ATTGTAACCAAATCAATACCAAGCTACAGTTTATTTATATACCAAAGACA
TGAAGTTAGATAACTTATGATGAGAAATAATTTGAGAATGTTTGTCTTTG
ATTTTCTCTtcatctgtctgtctgtctgtctgtctgtaactTCAAAgatg
ttcgtttttttttaggTGAAACCTGGGGTAGTTTTTGTTTTAACCAATAG
GTTTACAGTTTCTCAGGCTTtgtcatttcaaaattccagaatcaTTCCAA
AATTGCACTcctaaaaagtactttaggcATGTGATAAATAACTTTCGtag
taaaatccaaatttatggCCTGTGTTTGATCGCACTCCTCAAGAATTTTA
GGTGTGCGTGAATTGTTAATTCAAACAACTGCGACccaagtttttcttta
tacatACCATAGATACAACAGAACAtaaatttatctttaaaaagctctaa
acactaaaataaaatcctccaaAAGCCAAAGCAAGCTTGGAAACACAAAA
ATCCTTCCTCTCGCTAAGGACGTCATCTtggtttgaaaatgtttaaatca
aaatttatcatgGATTTCAGCGAATGGCAACATTTAGTGGGAAAGAGGAT
TTGCTGACTATTAAgcagcctctataagaaactttttcgttaAACGATGA
GCAGAAGCCTGGAGACTTCCAAAGACTTAAAGGGGagtctttta
Run BLAST on NCBI

transcript from alignment at scaffold_92:63250..63943

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073475 ID=TCONS_00073475|Name=TCONS_00073475|organism=Clytia hemisphaerica|type=transcript|length=694bp|location=Sequence derived from alignment at scaffold_92:63250..63943 (Clytia hemisphaerica)
taaaagactCCCCTTTAAGTCTTTGGAAGTCTCCAGGCTTCTGCTCATCG TTtaacgaaaaagtttcttatagaggctgcTTAATAGTCAGCAAATCCTC TTTCCCACTAAATGTTGCCATTCGCTGAAATCcatgataaattttgattt aaacattttcaaaccaAGATGACGTCCTTAGCGAGAGGAAGGATTTTTGT GTTTCCAAGCTTGCTTTGGCTTttggaggattttattttagtgtttagag ctttttaaagataaatttaTGTTCTGTTGTATCTATGGTatgtataaaga aaaacttggGTCGCAGTTGTTTGAATTAACAATTCACGCACACCTAAAAT TCTTGAGGAGTGCGATCAAACACAGGccataaatttggattttactaCGA AAGTTATTTATCACATgcctaaagtactttttaggAGTGCAATTTTGGAA tgattctggaattttgaaatgacaAAGCCTGAGAAACTGTAAACCTATTG GTTAAAACAAAAACTACCCCAGGTTTCAcctaaaaaaaaacgaacatcTT TGAagttacagacagacagacagacagacagatgaAGAGAAAATCAAAGA CAAACATTCTCAAATTATTTCTCATCATAAGTTATCTAACTTCATGTCTT TGGTATATAAATAAACTGTAGCTTGGTATTGATTTGGTTACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045603XLOC_045603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073475-exon-scaffold_92-1491911889:63250..63943TCONS_00073475-exon-scaffold_92-1491911889:63250..63943Clytia hemisphaericaexon
TCONS_00073475-exon-scaffold_92-1510915933:63250..63943TCONS_00073475-exon-scaffold_92-1510915933:63250..63943Clytia hemisphaericaexon
TCONS_00073475-exon-scaffold_92-1575043694:63250..63943TCONS_00073475-exon-scaffold_92-1575043694:63250..63943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:63250..63943 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.519836 1.01528 0.286254 0.59978 0.816881 1.21053 1.03251 1.06872 0.571267 0.930775 2.62574 1.6864 1.01428 0.76462 2.62986 1.57826 1.8763 1.67716 2.46445 0.947952 2.39239 1.47768 1.33333 1.4705 1.82053 1.85683 0.411099 0 0.565286 1.59485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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