Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073472
Unique NameTCONS_00073472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073472 ID=TCONS_00073472|Name=TCONS_00073472|organism=Clytia hemisphaerica|type=transcript|length=220bp
agaacattaCAGAAACTGGAAAACTTACGAAAATATCAAATTTTCATCGA
AGCATCGACCGATAGAGTCAACAAACACATGGTCGTTAGTTATATGGTCG
TTATATTCCGCGGTTACGATAGATAGCATTGAATTTAAAAGCAGAAATAT
ATCATACCCAGCAGGTGCGTATTTCTTTTAATCCCAGAAGAGTCTAGCAT
ACCCACACCTCTGTTTCATA
Run BLAST on NCBI

transcript from alignment at scaffold_92:52695..52914

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073472 ID=TCONS_00073472|Name=TCONS_00073472|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at scaffold_92:52695..52914 (Clytia hemisphaerica)
TATGAAACAGAGGTGTGGGTATGCTAGACTCTTCTGGGATTAAAAGAAAT ACGCACCTGCTGGGTATGATATATTTCTGCTTTTAAATTCAATGCTATCT ATCGTAACCGCGGAATATAACGACCATATAACTAACGACCATGTGTTTGT TGACTCTATCGGTCGATGCTTCGATGAAAATTTGATATTTTCGTAAGTTT TCCAGTTTCTGtaatgttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045600XLOC_045600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073472-exon-scaffold_92-1491911889:52695..52914TCONS_00073472-exon-scaffold_92-1491911889:52695..52914Clytia hemisphaericaexon
TCONS_00073472-exon-scaffold_92-1510915933:52695..52914TCONS_00073472-exon-scaffold_92-1510915933:52695..52914Clytia hemisphaericaexon
TCONS_00073472-exon-scaffold_92-1575043694:52695..52914TCONS_00073472-exon-scaffold_92-1575043694:52695..52914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:52695..52914 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23713 0 0 0 3.33668 3.39976 3.18105 2.97806 0 0 2.50676 0.823921 2.46833 0 0.702483 3.01549 4.64354 1.38157 3.94529 4.12846 0 0 0 0 5.313 3.5563 0 0 1.37312 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top