TCONS_00073469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073469
Unique NameTCONS_00073469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073469 ID=TCONS_00073469|Name=TCONS_00073469|organism=Clytia hemisphaerica|type=transcript|length=2585bp
CTCTGAAGGAGGTCAATCATTTTACCATTATTTTGCACCACCTCTTCCAA
AGAATGTTATCATGTTTGCAACAAACAACAATTCAATCCAAGAACAGTTT
GAAGTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAAGAAAATCGGCGA
ATTCTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTGACTTGACAGAGG
AAGAAGTGGATGCAacaaataaagttttaaaaatggATCGATTACTTAAA
ATTAGTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCAAGACAA
AGATGAAGAAGATTTAGTTTTTGATAACGACAATGATGATATcacagaat
ttgaaaaaagtttagaaaaattTGAAGACGACTTCAAGGAAAACCAATCA
GCCATCAAAACACTTCATAAAAAGGTTGCTTCTCTACCAACCAAATCATC
AACTAAAAAGAAAGTATCCGATTTCTTCAAACCtaaacaacagaaaaaaa
attctgatttcaaagctaaaacaataaCCAGTAAAGAAACTGTTCTGACA
GAAACTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACAAAAGGG
AAAAAGACCACACCCATTTGTCGACTCCCCTGAATCTAAACCAAAGAAAG
CAATGATGCAAGCCAAACCTTCCAAAACACCAGAGATGGCTAAGAGAAGA
GTCATAAGGAAATCTGGGAAGTCACCAGCAGCTAAATTTTCTGATCTCAT
TTCTCATGAAAATCCTACAGGACGGTGGGGTCATGGATGCTGCAAGATTT
GTCATGATAAAGCAATAGTCATTGGTGGTCAAACCAAACAACAGATGAAT
ACTGATTCTATGTGGCTTCTTGACTTGAAAACCCGAAAATGGGAGTTACA
AAAGTCCGATAATTCTACAATTGATCGTCGTGTCGGACATAGTGTCGTAT
ATGACGAAAAAAGAAACCTCGTTTTTGTTTATGGTGGATCAAAACCGAAG
AAATGGTATAGTGATGTTTATTCACTGAATCTTGCCACTTTCGAATGGGA
AAAATCAGAGACCATTGGTAAAGCCCCAACAAGAGCTTATCACTCATGCA
ACAAATTTCACGACGAACTTTTTGTATTTGGGGGTGTTTACCCAAACCCT
GACCCTGACCCTGATGGTTGCAGCAATGAACTCGTCATTTATGATATTGC
AAATAAAAGTTGGTACACACCTATCATTAGCGGTGATATTCCGAATCCTC
GATCGGATCATTCAGCAGTGATGATTGGTTCCAAATTGTACATTTTCGGT
GGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGTCTCGATATAGT
CATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGGTCCGTCTGCCC
GTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATCAATTTTGTATT
TATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTTTTTGTTTTCGA
TTCAGTCAAAACGTGTTGGAGCAAGATACATAACGAGCATAATTCCATTT
TACGTGCTGGTCATACATCACTGTTGATGACGTCACCATATAgtgatgat
gacgtcacaaaagcCAACAACAAAAGTCAGGTGTTAATTTTCGGAGGCGG
TGATAACGCCGGACAATTTTATAACGATGTCATTCTACTGGATGTGAAAT
AGCAAAAGTGTCGTTTACTATATTTCgtgttttttaatattttttttttg
gtatttttatttaGTATGATTCTTATGTTTATCTCTTTTAGGCGAGATTA
GGTAAAGAATATTATCATTTAAGATTCTCCATATTTGTGGTAGTGTATAT
Agaattaaagggacataaaagtactgacgaaattagtaaacaaaccatat
gtggcgggatacaaaatcaaaacaaatgtcacatgtcaaaatcaaaaatc
aaaaNNNNNNNNNNNNNNNNNNNaaaatcaaaacaaatgtcacatgtcaa
aatcaaaaatcaaaacaaatatggctgattttgattgtttcaattgtttt
acaagtttgttttggacacgtgattttaattgttttctttaatgacacgt
ggtttgtgcaatgtttacattttactacttttatgtccctttaagcagGC
AGCAATTATGTGTGATTTCAGGAGTTCTATATGTGCTTTAACCTCCTTTC
AGAGAGATGAGTTAAATAccgaaattcatgatattcatgacgtaatgttt
tctacggaaagaccccggtttttgccagtagtggcacttttttacacctt
ttgtctagtttataagtgccactactggctaaaaccgaggtatttccgta
gaaaacattacgtcatgactATCAAGAAATTAATTCGTAAATGCATGCTC
CTCCCATGCTCCTCTGATCTTACGCGAATTGTATTCACGAATTTTGAATT
GAATGAACATTACttgcaaatttcttttcatatttTAATATATATTAAAA
CTTTAAATCCGAATGTGGTTTTAGAATGATCCAAAATTACTTATACTTTG
TATGACGTCCTGTTGTTATCTATTCATTATTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_92:259747..269892-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073469 ID=TCONS_00073469|Name=TCONS_00073469|organism=Clytia hemisphaerica|type=transcript|length=10146bp|location=Sequence derived from alignment at scaffold_92:259747..269892- (Clytia hemisphaerica)
CTCTGAAGGAGGTCAATCATTTTACCATTATTTTGCACCACCTCTTCCAA
AGAATGTTATCATGTTTGCAACAAACAACAATTCAATCCAAGAACAGTTT
GAAGTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAAGAAAATCGGCGA
ATTCTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTGACTTGACAGAGG
AAGAAGTGGATGCAACAAATAAAGTTTTAAAAATGGTATGGAAGGGTTTT
TGTTCAAAGAAAGTCTTATAATTACTCCCTCAAGCAGCTTTAGAAGTTTT
ATAAACAAAAAAGGAACCTTGTACATTCACACAAAATTTTTACATACTGC
TTTTTGTTAACCTGTTTTTGTTGGACTGTAATAAGGGTTTTCAGAAAACC
TGAACAAGGATCTATATTTCCTCCCATCTTAGCTTACAAAGTATAGTTAC
AATAAAAAGTTTGCAATTTCTTCCTTTGATAACTTATTAACAATTTATTT
TTTCTTAGGATCGATTACTTAAAATTAGTGTGACCAAACAAGGAGCTGAT
GAAGGATTCTCTTCTCAAGACAAAGATGAAGAAGATTTAGTTTTTGATAA
CGACAATGATGATATCACAGAATTTGAAAAAAGTTTAGAAAAATTTGAAG
ACGACTTCAAGGAAAACCAATCAGCCATCAAAACACTTCATAAAAAGGTT
GCTTCTCTACCAACCAAATCATCAACTAAAAAGAAAGTATCCGATTTCTT
CAAACCTAAACAACAGAAAAAAAATTCTGATTTCAAAGCTAAAACAATAA
CCAGTAAAGAAACTGTTCTGACAGAAACTAAAGATAAAGTCAATGACTCT
GATGGTGATAAAGAACAAAAGGGAAAAAGACCACACCCATTTGTCGAGTT
AGTACACTCTATATTCTTTTATGTTTCCATTAGACAACAGTCAGTTGACT
TGGGTATCAATGAACTGAGAAGAGAGTAGAGAACTCAATATTATCCAAAA
GTTACTTTAGGCATACAAACTTTCGCGGGCAGAAACTTTCGCGATGTCGA
AAAATCGCGAAATGTTATTCGCGAGCATAAACTTTCGCAAATCGTTAGAT
AAAAATGAGAATTTTCGAATAAAAATTGCCTTAAATTGAAAAATATTCAT
TAAATCCACTAAAGACGATTGCTCTTCGATTTTAAAATGGCATTAAAGGA
TAATAATATGCCTAAAATTTGATTTCTATTACGATTTCGAGGTTTTTTGA
TTTTAAATTTTTTAAGAATATTTCGTGAGCATAAACTTTCGCGAATTGCC
CTGTTAATAATTTTCAAAGACATTTACTTTCGCGAAAAAGGCCAAAGTTC
GCGAAATTCGCGAAAGTTTCTGCTTGCGAAACTTTTTACGCCTAAAGTAA
TGGCGATCTTGACACTTGTCAACATCCATGAATTATACGTTGTTAATCAC
GCCTTAATTCATTCAGCTAAGTTTTTGTCTCGACAGCTCAAATTTAAAAA
GTGTAATTATTTCACTAAAGACTGGTCTTAATGATGATTTGTTCTAGCTC
CCCTGAATCTAAACCAAAGAAAGCAATGATGCAAGCCAAACCTTCCAAAA
CACCAGAGATGGCTAAGAGAAGAGTCATAAGGAAATCTGGGAAGTCACCA
GCAGCTAAATTTTCTGATCTCATTTCTCATGAAAGTAAGCATTTGAGAAA
TTGCAATTATTGTTTTTGTTAACTGGTTGTTGTTTTTTTTATGCGGTCTG
TACGAGATTTTTTTAAGCAATGGAATTGGATCTTTTCGCACGAGGACAGG
CTTACACAGCCTGTCTGACAAAAAATCGACAGGAAAATGACACTTTCAAA
TTTCTGCTTGATTGATTTAAAGAAGTTATTACATGTGCGTCAAAAGAAGG
TAAATTGCATTGTCTTTAAATTGTCGACTTTCTGTCGTCTTTTGTCTAAA
ATAAGGGAAGACTAAAAAATGCTTTCAAAACTTTGTATTCAACCTTACAG
ATCCTACAGGACGGTGGGGTCATGGATGCTGCAAGATTTGTCATGATAAA
GCAATAGTCATTGGTGGTCAAACCAAACAACAGATGAATACTGATTCTAT
GTGGCTTCTTGACTTGAGTAAGTAGCATGAAGCAATAATTCAAAATATTG
TTGTGGATCAATAGATTATTGTATTTTTTTGCTTGCCTTGATTCATCCCT
GAGGTGATTTATTACCATGACAATTTCGTTTCCTCTTCTAAATTCCCTCG
ATTAGATAAGGCTGTAACAATAACAAAGGTGCTTGAATTTGACTGAAAAA
AGCAATTATAAAAAATTAAAAGTTCTTTTGGGGTTTTAATTATTTAAGTC
AGGAGATAATATTATAAAGAAGTGGTATTTTATATTCATTATAGCCTTGT
TTTTCACCGATAGACACATCAAAATCTCTAAAAATCGAGTAGTCTTCTAT
TTAAAACCTTTTCAGAAACCCGAAAATGGGAGTTACAAAAGTCCGATAAT
TCTACAATTGATCGTCGTGTCGGACATAGTGTCGTATATGACGAAAAAAG
AAACCTCGTTTTTGTTTATGGTGGATCAAAACCGAAGAAATGGTATAGTG
ATGTTTATTCACTGAATCTTGCCACTTTCGAATGGGAAAAATCAGAGGTA
TATCTCTTTTTGATTCGAATCTATTATCAGCTCTTAAAAGCAGAACAAAT
TAAGTATTGAATGGAGAGCTTCAGCTTAGGAGCTGTTTTAAAAATGGAGG
CAAGCTGGCCCAGGTGAGATGGGATGGATAGCTAAAAAAATCATATTGTA
TCATATTTCAATTTGATTTAGCATAAAGACATAATCCTGAAAATTTGAAG
TCATTTTGTTAAAAATAAATCAAAGGATATTTCACTTTCATTTTCGGTCA
GAGTGTGCAAACAGTACTTTTAAAAATCGTTTTGTGTGAAAACAAAATAG
TTTTTTATTTGAAATTTTCACAGGTTTGCTTACGCACATTTCTACGTCAC
AAATATCAATTTCGTAATTTTTCTAGAGATTTAATGTAGGTACTATTATA
TTTCTAGACCATTGGTAAAGCCCCAACAAGAGCTTATCACTCATGCAACA
AATTTCACGACGAACTTTTTGTATTTGGGGGTGTTTACCCAAACCCTGAC
CCTGACCCTGATGGTTGCAGCAATGAACTCGTCATTTATGATATTGGTAT
GTTTTTATATTTCATTAATACAAATTCATCATGTTTTCTGTTGTCATTCC
CAAGGAAAATAAAAGATAAAAGAGGCTCTTCTATTGAGCCAAGGGCGGGT
ATTTTAAGGTATCCTCAGAACATTTATATCGTGTACATCCTTAAAGTTTT
TCGAGATAATTCGCAGAATACGGGCAAATAAAAAAAACCGTGTGTCTGAT
TTTCAATCACTTCTTGTTTCTTACATTTTCCTACGAAAATTCACAAACTA
TTTCCACAAAAATTTTCTTCTTGACATTTCAGCAAATAAAAGTTGGTACA
CACCTATCATTAGCGGTGATATTCCGAATCCTCGATCGGAGTAAGTTCCT
CACTCTAGATTTGACAGCATCTCGTCGATCTTTTAATAACACTCCTGTAC
TGGTAAGAATGGAATTGTCTTTCATATGTGGGAATTCAGATTCTACCGTG
GTTGATCTGGTATTTCGAGGTTTTTGGTTATTTTGCTTTCGGCAGCCGCC
TTTTTAAGAGGCGGCCGCCAGTTATAATCCGCGGCCGCCTTTTACAAAGA
GCGGCCGCCTTTTATGATAAGCGGCCACCTTTTTCCTTCGAAAAAGGAGA
CCGCCCTTTATAACTGGCGCCCACTCTTTATAACAGGCGGCCGCCCTTTA
AAAACGCGGCCGCTATTTATAAAGGGCGGCCACGTTTTTTAAAAGGCGGC
CGCTTCTTTTACCGCCTTTTTCATAATCTGGTCTGTGAAATACAAGAGTC
GTCAAAGTTAATCGCGTGGTAAGGATAGGATTAGAGTGTAAATATATATA
CACAGTATAATATAATATACAATATACAGTACTGTACAGTACTGTAATCG
AGATAATGTTTTTAGAGCCGAACATCAACTTGGGTGTGATTGACCTAGTC
AAATCCTTCTCACCACACTCACCACATACATAAAATCACATGGGTAGCTA
CCATGTTTGTTTATGTTTAGCCAATACATTTCACAGACCAGATTATGAAA
AACGCGGTAAAAAACGCGGCCACCTTTTATAAAACGTGGCCGCCCTTTAT
AACTGACGGCCGTCCTTTATAAATAGCGGCCGCGTTTTTAAAGGGCGGCC
GCCTGTTATAAAGAGTGGCCGCCTTTTTCGAAGGAAAAGGGTGGCCGCTT
ATTATAAAAGGCGGCCGCCAGTATTATAGGCGGTCGCTCTTTGTAAAAGG
CGGCCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAATACCAG
ATCAGCCACGGTAAGATTCTATTGCTTACCCAAAAGATTCAGTTGGGATT
CTCAAAGCTTTAGGGTCAGTGAAGAGTAGCTTTCTAATGAAAGAGGGAGA
TGGAATTTCAGGGTGTTTCTTAACGCCTGGGATTATTTCTTGAACTGTCC
TGAACAGTAATTTTTCCGATAGGTAAATGTAAATGGTTCTGTGACATAGG
GGTGTTGAATATTTTGGAGAATTATTTGCTGAATCTAAAAATGCTTTTTG
GCATTAGCTGCTTTTCAGTCGTTTATTCATCTATCCAACGATGTAAAAAT
AATAGANATTGAGCCAAGGGCGGGTATTTTAAGGTATCCTCAGAACATTT
ATATCGTGTACATCCTTAAAGTTTTTCGAGATAATTCGCAGAATACGGAC
AAATAAAAAAAACCGTGTGTCTGATTTTCAATCACTTCTTGTTTCTTACA
TTTTCCTCCGAAAATTCACAAACTATTTTCCACAAAAATTTTCTTCTTGA
CATTTCAGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGATATTC
CGAATCCTCGATCGGGGTAAGTTCCTCACTCTAGATTTGACAACATCTCG
TCGATCTTTTAATAACACTCCTGTACTGGTAAGAATGGAATTGTCTTTCA
TATGTGGGAATTCAGATTCTACCGTGGCTGATCTGGTATTTCGAGGTTTT
TGGTTATTTTGCTTTCGGCAGCCGCCTTTTTAAGAGGCGACCGCCAGTTT
TAATCCGCGGCCGCCTTTTACAAAGAGCGGCTGCCTATAATACTGGCGGC
CGCCTTTTATGATAAGCGGCCACCTTTTTCCTTCGAAGAAGGAGGCCGCC
CTTTATTACGATGGCCCCTAAGGCTCACCACGCACTTCCAGTTCTTATAA
AATTTGTGAACTAGAACTGTCTAGGGTCATGGCCCAGAAGGCTCACAAGA
CACTGCGCACTTCCGAGTTTTTTTGTGACGACATTGCACACTTCTAAAAA
TATTTTAGAAACGTAAAAGTCCCCCTCGAAAGATAGCCGTTCTGGTCAGC
AAAATAGATACCGAGTTGTAATAAGTGAGTTGATGATAATAGCGAAGAGG
CTCGGAAATCCCGAGTTATTTTCTTGAGTTCAAAAGCCGAGTTAGTTACG
AAAAACCGAGTTATGACGTTATTTTTCGGAAATTTCGACGTCATTTTGTA
CCTTCTATATGACGTCATTCTCAATTCTGTAGCTCGTTTTTTTTCCTTGC
CTTTAAAATTTCGAGTTATCTCTGATGGTATCTAAACTCAAGTAAGTCCT
GCCTTTAAATTTTCGAGTCATTTCTCGTTTTTTAACTCGGTTTTGTTTCT
TTTAAATTTTCGAGTTATTTTCCTTCCTGTACATTCTCGGATTCTCGAAT
TATTTTCACAGCAGAAGGCTCAAAACACACACACACACACACACTTCTAG
TTTTCATGCACTTAGGGTGGTCCTATGGCGGAAAATACCAGCGGCGTGGA
GGCAAAAAAACAAAGTTGATATTTGCTCACTTTTTGCTTCCCAGATTTTT
GCCACTGGGGGGAATTTTGCAGACCAGGACTTAACTCAGAAATTTTAACC
TGTAACTCTTGATATGAGCAACTCGGAAATTTTAACTCATTTTGCGTAAC
TCGACATTCATTTTATAGACCAAAAAAAAAATTGATCGCGCGGGCCGCTC
GCTTGGAAATTTCCCGCCCTGACAAAAAGTCAGAAGTGCGCAGTGTCACT
TGAGCCTTCTGGGCCATTGACCATAGGCAGTTCTAGTTCACAAATTTTAT
AAGAACTGGAAGTGCGTAAAAACTAGAAGTGCGTGTTTTGAGCCTTCTGG
GCCATCGTACTAACGGATATAAGGTTGGTTCTTTCCGGACATCTCAGCAA
ACCTTTGATAGCTGGTTTGCTATGAAGCCGCTGATATCGTTGTGCCTCAT
TGATACGAAACCACCTTTTTTGCACGTCAGGGCATATTCGAGCGAGAACG
GAGTTCCACATTTGCAATGGGAAGGTGTACGCTGTGTAATGCCCACCCGT
AACGGATTCTGATTAGGTCAACGAAACATTGCTTGTTGAGAATGTATCCT
TCGTTTTGAACAGGCAAAGTCGTGAGCCATGCTTAGGCTCTGTGTTGTCG
ATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGAGTCAGGTCGTTGT
GAGGTGAAGAACGATGTTGCTATTTCGTTCCCTCTTTTCATTCTTGATTT
TCTTTGTAGGCAGGCGAGGATCAAGTTTATATGCATATTCTTGGCTTACG
ATTGTCTCGGATAGATTGGATGTGATGAGTAGTAGTAGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTCAAAAA
GTGTGTCAAAATCTAGCTAAAAGCATAACACGCACTGCACACAGAGCTTT
TTAATAGAGTGCTCATTTCAATAGGAAAACAATGGTTGTTCTCTTGAGAG
AAGTGCCTTCTAGAGGTAGTTGGTTATCTATTATTTTTACATCGTTGATC
TATCTTTGTAGTCATTCAGCAGTGATGATTGGTTCCAAATTGTACATTTT
CGGTGGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGTCTCGATA
TAGGTAAATTACAACATTTGTATATCCTTTCAACTCGTATCATTGTTTTC
CTTCGGAGACAAATTTCCATTCATTTTCACCGCCTATGGAATAACAATAG
GATCCCAAAAGAAAATCATCTCAACTGAAAAGACAACTAAAAAAACTTGT
CTTTTAAACTTGTTGGCTATCGAAAAAGATCTTCAATTCATTATATGCAC
CACTGCAATGACTTCACGAAATTATGCAACTTTTCTGTTTTTGTTCCACC
CAATACGTCACTTTTTCTATTCTTAAAGTGACATATTGGATGGAAAATCT
TAAAAGTTCTCAGAAGACTCTTCAGTGGTGCAAATCATGAATATTTTAAT
AGAGTAGATATTCAATACTTTTATGCAATAAGTTCCATATTTTAATGCAA
GATCATTTTAAAGCCAAGTATTTCTTCCCAGCGACGACTTTACTAAACAA
CCACTTTAGTTTGGTCAAATTTAATCGTTTTAACTTTAACTTTCTCTTCA
TAGTCATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGGTCCGTCT
GCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATCAATTTTG
TATTTATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTTTTTGTTT
TCGATTCAGGTAAACCGTGCCAAAAAAAGGCTAGGAAATTGAGCTTTTTT
TTGACAGGAACTCGTCTTTTTTTACAAGGGAAAACACGTACTCAGGACTC
GGGGTTCTGAGGCTGTTTGACTTTAGTCTTCTTTACCTGACTATACCAAA
TTTATTTTGTGTTATTAATTTCGCATTGCGAAAGTATTACGATAGCCTTT
CGCGGCGGCGGTGTCCTCGGAAAAAAAATTAGAAAACGAAAGTGCTTGAT
ACGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTTGTTTTGAGATTACTTC
TTTTCTTCTGTTTTAGTCAAAACGTGTTGGAGCAAGATACATAACGAGCA
TAATTCCATTTTACGTGCTGGTCATACATCACTGTTGATGACGTCACCAT
ATAGTGATGATGACGTCACAAAAGCCAACAACAAAAGTCAGGTGTTAATT
TTCGGAGGCGGTGATAACGCCGGACAATTTTATAACGATGTCATTCTACT
GGATGTGAAATAGCAAAAGTGTCGTTTACTATATTTCGTGTTTTTTAATA
TTTTTTTTTTGGTATTTTTATTTAGTATGATTCTTATGTTTATCTCTTTT
AGGCGAGATTAGGTAAAGAATATTATCATTTAAGATTCTCCATATTTGTG
GTAGTGTATATAGAATTAAAGGGACATAAAAGTACTGACGAAATTAGTAA
ACAAACCATATGTGGCGGGATACAAAATCAAAACAAATGTCACATGTCAA
AATCAAAAATCAAAANNNNNNNNNNNNNNNNNNNAAAATCAAAACAAATG
TCACATGTCAAAATCAAAAATCAAAACAAATATGGCTGATTTTGATTGTT
TCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTGTTTTCTT
TAATGACACGTGGTTTGTGCAATGTTTACATTTTACTACTTTTATGTCCC
TTTAAGCAGGCAGCAATTATGTGTGATTTCAGGAGTTCTATATGTGCTTT
AACCTCCTTTCAGAGAGATGAGTTAAATACCGAAATTCATGATATTCATG
ACGTAATGTTTTCTACGGAAAGACCCCGGTTTTTGCCAGTAGTGGCACTT
TTTTACACCTTTTGTCTAGTTTATAAGTGCCACTACTGGCTAAAACCGAG
GTATTTCCGTAGAAAACATTACGTCATGACTATCAAGAAATTAATTCGTA
AATGCATGCTCCTCCCATGCTCCTCTGATCTTACGCGAATTGTATTCACG
AATTTTGAATTGAATGAACATTACTTGCAAATTTCTTTTCATATTTTAAT
ATATATTAAAACTTTAAATCCGAATGTGGTTTTAGAATGATCCAAAATTA
CTTATACTTTGTATGACGTCCTGTTGTTATCTATTCATTATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045598XLOC_045598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073469-exon-scaffold_92-1575043694:269658..269892TCONS_00073469-exon-scaffold_92-1575043694:269658..269892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:268996..269384TCONS_00073469-exon-scaffold_92-1575043694:268996..269384Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:268209..268345TCONS_00073469-exon-scaffold_92-1575043694:268209..268345Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:267776..267892TCONS_00073469-exon-scaffold_92-1575043694:267776..267892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:267246..267427TCONS_00073469-exon-scaffold_92-1575043694:267246..267427Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:266697..266835TCONS_00073469-exon-scaffold_92-1575043694:266697..266835Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:266353..266410TCONS_00073469-exon-scaffold_92-1575043694:266353..266410Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:261840..261931TCONS_00073469-exon-scaffold_92-1575043694:261840..261931Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:261184..261339TCONS_00073469-exon-scaffold_92-1575043694:261184..261339Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1575043694:259747..260826TCONS_00073469-exon-scaffold_92-1575043694:259747..260826Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:269658..269892TCONS_00073469-exon-scaffold_92-1510915933:269658..269892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:268996..269384TCONS_00073469-exon-scaffold_92-1510915933:268996..269384Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:268209..268345TCONS_00073469-exon-scaffold_92-1510915933:268209..268345Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:267776..267892TCONS_00073469-exon-scaffold_92-1510915933:267776..267892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:267246..267427TCONS_00073469-exon-scaffold_92-1510915933:267246..267427Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:266697..266835TCONS_00073469-exon-scaffold_92-1510915933:266697..266835Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:266353..266410TCONS_00073469-exon-scaffold_92-1510915933:266353..266410Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:261840..261931TCONS_00073469-exon-scaffold_92-1510915933:261840..261931Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:261184..261339TCONS_00073469-exon-scaffold_92-1510915933:261184..261339Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1510915933:259747..260826TCONS_00073469-exon-scaffold_92-1510915933:259747..260826Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:269658..269892TCONS_00073469-exon-scaffold_92-1491911889:269658..269892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:268996..269384TCONS_00073469-exon-scaffold_92-1491911889:268996..269384Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:268209..268345TCONS_00073469-exon-scaffold_92-1491911889:268209..268345Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:267776..267892TCONS_00073469-exon-scaffold_92-1491911889:267776..267892Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:267246..267427TCONS_00073469-exon-scaffold_92-1491911889:267246..267427Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:266697..266835TCONS_00073469-exon-scaffold_92-1491911889:266697..266835Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:266353..266410TCONS_00073469-exon-scaffold_92-1491911889:266353..266410Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:261840..261931TCONS_00073469-exon-scaffold_92-1491911889:261840..261931Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:261184..261339TCONS_00073469-exon-scaffold_92-1491911889:261184..261339Clytia hemisphaericaexon
TCONS_00073469-exon-scaffold_92-1491911889:259747..260826TCONS_00073469-exon-scaffold_92-1491911889:259747..260826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:259747..269892 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00196615	1.98372e-06	1.1948	0.023368	0.38924	0	0.767995	5.28916e-05	0.641355	0.968016	1.07538	0.193244	0.375702	0.269753	0	0	0	0	0	0.00019744	0.00034154	0.0149446	0	0	0.333019	0.667742	3.33896e-08	1.0559	4.83948e-10	0.972111
Blast
[Close]
BLAST of TCONS_00073469 vs. Swiss-Prot (Human)
Match: RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.685e-24
Identity = 90/386 (23.32%), Postives = 161/386 (41.71%), Query Frame = 2 
Query:  647 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSDHSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS------DDDVTKANNKSQ-------------------------VLIFGGGDNAGQFYNDVILLDV 1696
            K +   +P   P  A    +   G SP A+     S+  P G    G       K  ++GG    +  +D +  +DL   +W+L       + R    S +     + ++V+GG+      + +  LN  T  W   E     P+ R +H S     ++L+VFGG      P  D    +L ++D    +W  P   G+ P+PR  H  V  G+KL+I GG      +DD++C+DI  MK+ +L P G  P+    HS   +       I+GG     +L+ ++ + + +  W+ +  + +++L  G   H+  ++  P +      D +    N++++                          L+FGG +  G+ Y+D I+  V
Sbjct:    2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371
The following BLAST results are available for this feature:
BLAST of TCONS_00073469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RABEK1.685e-2423.32Rab9 effector protein with kelch motifs OS=Homo sa... [more]
back to top