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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073467 ID=TCONS_00073467|Name=TCONS_00073467|organism=Clytia hemisphaerica|type=transcript|length=1363bp
CATCTCGTCGATCTTTTAATAACACTCCTGTACTGTCATTCAGCAGTGAT
GATTGGTTCCAAATTGTACATTTTCGGTGGCTGGGATGCGCCGACCTGTC
ATGATGATATCTATTGTCTCGATATAGTCATAATGAAGTATACGAGATTG
AAACCTATTGGTGAAGGTCCGTCTGCCCGTACTTGGCATTCCACCTCTGT
TCTATCAAATCCAAATCAATTTTGTATTTATGGTGGCTTCGATGGCAACG
ACAGTTTGAATGATCTTTTTGTTTTCGATTCAGTCAAAACGTGTTGGAGC
AAGATACATAACGAGCATAATTCCATTTTACGTGCTGGTCATACATCACT
GTTGATGACGTCACCATATAgtgatgatgacgtcacaaaagcCAACAACA
AAAGTCAGGTGTTAATTTTCGGAGGCGGTGATAACGCCGGACAATTTTAT
AACGATGTCATTCTACTGGATGTGAAATAGCAAAAGTGTCGTTTACTATA
TTTCgtgttttttaatattttttttttggtatttttatttaGTATGATTC
TTATGTTTATCTCTTTTAGGCGAGATTAGGTAAAGAATATTATCATTTAA
GATTCTCCATATTTGTGGTAGTGTATATAgaattaaagggacataaaagt
actgacgaaattagtaaacaaaccatatgtggcgggatacaaaatcaaaa
caaatgtcacatgtcaaaatcaaaaatcaaaaNNNNNNNNNNNNNNNNNN
Naaaatcaaaacaaatgtcacatgtcaaaatcaaaaatcaaaacaaatat
ggctgattttgattgtttcaattgttttacaagtttgttttggacacgtg
attttaattgttttctttaatgacacgtggtttgtgcaatgtttacattt
tactacttttatgtccctttaagcagGCAGCAATTATGTGTGATTTCAGG
AGTTCTATATGTGCTTTAACCTCCTTTCAGAGAGATGAGTTAAATAccga
aattcatgatattcatgacgtaatgttttctacggaaagaccccggtttt
tgccagtagtggcacttttttacaccttttgtctagtttataagtgccac
tactggctaaaaccgaggtatttccgtagaaaacattacgtcatgactAT
CAAGAAATTAATTCGTAAATGCATGCTCCTCCCATGCTCCTCTGATCTTA
CGCGAATTGTATTCACGAATTTTGAATTGAATGAACATTACttgcaaatt
tcttttcatatttTAATATATATTAAAACTTTAAATCCGAATGTGGTTTT
AGAATGATCCAAAATTACTTATACTTTGTATGACGTCCTGTTGTTATCTA
TTCATTATTTAAT Run BLAST on NCBI transcript from alignment at scaffold_92:259747..264699- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073467 ID=TCONS_00073467|Name=TCONS_00073467|organism=Clytia hemisphaerica|type=transcript|length=4953bp|location=Sequence derived from alignment at scaffold_92:259747..264699- (Clytia hemisphaerica)
CATCTCGTCGATCTTTTAATAACACTCCTGTACTGGTAAGAATGGAATTG
TCTTTCATATGTGGGAATTCAGATTCTACCGTGGCTGATCTGGTATTTCG
AGGTTTTTGGTTATTTTGCTTTCGGCAGCCGCCTTTTTAAGAGGCGACCG
CCAGTTTTAATCCGCGGCCGCCTTTTACAAAGAGCGGCTGCCTATAATAC
TGGCGGCCGCCTTTTATGATAAGCGGCCACCTTTTTCCTTCGAAGAAGGA
GGCCGCCCTTTATTACGATGGCCCCTAAGGCTCACCACGCACTTCCAGTT
CTTATAAAATTTGTGAACTAGAACTGTCTAGGGTCATGGCCCAGAAGGCT
CACAAGACACTGCGCACTTCCGAGTTTTTTTGTGACGACATTGCACACTT
CTAAAAATATTTTAGAAACGTAAAAGTCCCCCTCGAAAGATAGCCGTTCT
GGTCAGCAAAATAGATACCGAGTTGTAATAAGTGAGTTGATGATAATAGC
GAAGAGGCTCGGAAATCCCGAGTTATTTTCTTGAGTTCAAAAGCCGAGTT
AGTTACGAAAAACCGAGTTATGACGTTATTTTTCGGAAATTTCGACGTCA
TTTTGTACCTTCTATATGACGTCATTCTCAATTCTGTAGCTCGTTTTTTT
TCCTTGCCTTTAAAATTTCGAGTTATCTCTGATGGTATCTAAACTCAAGT
AAGTCCTGCCTTTAAATTTTCGAGTCATTTCTCGTTTTTTAACTCGGTTT
TGTTTCTTTTAAATTTTCGAGTTATTTTCCTTCCTGTACATTCTCGGATT
CTCGAATTATTTTCACAGCAGAAGGCTCAAAACACACACACACACACACA
CTTCTAGTTTTCATGCACTTAGGGTGGTCCTATGGCGGAAAATACCAGCG
GCGTGGAGGCAAAAAAACAAAGTTGATATTTGCTCACTTTTTGCTTCCCA
GATTTTTGCCACTGGGGGGAATTTTGCAGACCAGGACTTAACTCAGAAAT
TTTAACCTGTAACTCTTGATATGAGCAACTCGGAAATTTTAACTCATTTT
GCGTAACTCGACATTCATTTTATAGACCAAAAAAAAAATTGATCGCGCGG
GCCGCTCGCTTGGAAATTTCCCGCCCTGACAAAAAGTCAGAAGTGCGCAG
TGTCACTTGAGCCTTCTGGGCCATTGACCATAGGCAGTTCTAGTTCACAA
ATTTTATAAGAACTGGAAGTGCGTAAAAACTAGAAGTGCGTGTTTTGAGC
CTTCTGGGCCATCGTACTAACGGATATAAGGTTGGTTCTTTCCGGACATC
TCAGCAAACCTTTGATAGCTGGTTTGCTATGAAGCCGCTGATATCGTTGT
GCCTCATTGATACGAAACCACCTTTTTTGCACGTCAGGGCATATTCGAGC
GAGAACGGAGTTCCACATTTGCAATGGGAAGGTGTACGCTGTGTAATGCC
CACCCGTAACGGATTCTGATTAGGTCAACGAAACATTGCTTGTTGAGAAT
GTATCCTTCGTTTTGAACAGGCAAAGTCGTGAGCCATGCTTAGGCTCTGT
GTTGTCGATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGAGTCAGG
TCGTTGTGAGGTGAAGAACGATGTTGCTATTTCGTTCCCTCTTTTCATTC
TTGATTTTCTTTGTAGGCAGGCGAGGATCAAGTTTATATGCATATTCTTG
GCTTACGATTGTCTCGGATAGATTGGATGTGATGAGTAGTAGTAGTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATG
TCAAAAAGTGTGTCAAAATCTAGCTAAAAGCATAACACGCACTGCACACA
GAGCTTTTTAATAGAGTGCTCATTTCAATAGGAAAACAATGGTTGTTCTC
TTGAGAGAAGTGCCTTCTAGAGGTAGTTGGTTATCTATTATTTTTACATC
GTTGATCTATCTTTGTAGTCATTCAGCAGTGATGATTGGTTCCAAATTGT
ACATTTTCGGTGGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGT
CTCGATATAGGTAAATTACAACATTTGTATATCCTTTCAACTCGTATCAT
TGTTTTCCTTCGGAGACAAATTTCCATTCATTTTCACCGCCTATGGAATA
ACAATAGGATCCCAAAAGAAAATCATCTCAACTGAAAAGACAACTAAAAA
AACTTGTCTTTTAAACTTGTTGGCTATCGAAAAAGATCTTCAATTCATTA
TATGCACCACTGCAATGACTTCACGAAATTATGCAACTTTTCTGTTTTTG
TTCCACCCAATACGTCACTTTTTCTATTCTTAAAGTGACATATTGGATGG
AAAATCTTAAAAGTTCTCAGAAGACTCTTCAGTGGTGCAAATCATGAATA
TTTTAATAGAGTAGATATTCAATACTTTTATGCAATAAGTTCCATATTTT
AATGCAAGATCATTTTAAAGCCAAGTATTTCTTCCCAGCGACGACTTTAC
TAAACAACCACTTTAGTTTGGTCAAATTTAATCGTTTTAACTTTAACTTT
CTCTTCATAGTCATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGG
TCCGTCTGCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATC
AATTTTGTATTTATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTT
TTTGTTTTCGATTCAGGTAAACCGTGCCAAAAAAAGGCTAGGAAATTGAG
CTTTTTTTTGACAGGAACTCGTCTTTTTTTACAAGGGAAAACACGTACTC
AGGACTCGGGGTTCTGAGGCTGTTTGACTTTAGTCTTCTTTACCTGACTA
TACCAAATTTATTTTGTGTTATTAATTTCGCATTGCGAAAGTATTACGAT
AGCCTTTCGCGGCGGCGGTGTCCTCGGAAAAAAAATTAGAAAACGAAAGT
GCTTGATACGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTTGTTTTGAGA
TTACTTCTTTTCTTCTGTTTTAGTCAAAACGTGTTGGAGCAAGATACATA
ACGAGCATAATTCCATTTTACGTGCTGGTCATACATCACTGTTGATGACG
TCACCATATAGTGATGATGACGTCACAAAAGCCAACAACAAAAGTCAGGT
GTTAATTTTCGGAGGCGGTGATAACGCCGGACAATTTTATAACGATGTCA
TTCTACTGGATGTGAAATAGCAAAAGTGTCGTTTACTATATTTCGTGTTT
TTTAATATTTTTTTTTTGGTATTTTTATTTAGTATGATTCTTATGTTTAT
CTCTTTTAGGCGAGATTAGGTAAAGAATATTATCATTTAAGATTCTCCAT
ATTTGTGGTAGTGTATATAGAATTAAAGGGACATAAAAGTACTGACGAAA
TTAGTAAACAAACCATATGTGGCGGGATACAAAATCAAAACAAATGTCAC
ATGTCAAAATCAAAAATCAAAANNNNNNNNNNNNNNNNNNNAAAATCAAA
ACAAATGTCACATGTCAAAATCAAAAATCAAAACAAATATGGCTGATTTT
GATTGTTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGATTTTAATTG
TTTTCTTTAATGACACGTGGTTTGTGCAATGTTTACATTTTACTACTTTT
ATGTCCCTTTAAGCAGGCAGCAATTATGTGTGATTTCAGGAGTTCTATAT
GTGCTTTAACCTCCTTTCAGAGAGATGAGTTAAATACCGAAATTCATGAT
ATTCATGACGTAATGTTTTCTACGGAAAGACCCCGGTTTTTGCCAGTAGT
GGCACTTTTTTACACCTTTTGTCTAGTTTATAAGTGCCACTACTGGCTAA
AACCGAGGTATTTCCGTAGAAAACATTACGTCATGACTATCAAGAAATTA
ATTCGTAAATGCATGCTCCTCCCATGCTCCTCTGATCTTACGCGAATTGT
ATTCACGAATTTTGAATTGAATGAACATTACTTGCAAATTTCTTTTCATA
TTTTAATATATATTAAAACTTTAAATCCGAATGTGGTTTTAGAATGATCC
AAAATTACTTATACTTTGTATGACGTCCTGTTGTTATCTATTCATTATTT
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073467-exon-scaffold_92-1575043694:264665..264699 | TCONS_00073467-exon-scaffold_92-1575043694:264665..264699 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1575043694:261840..261931 | TCONS_00073467-exon-scaffold_92-1575043694:261840..261931 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1575043694:261184..261339 | TCONS_00073467-exon-scaffold_92-1575043694:261184..261339 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1575043694:259747..260826 | TCONS_00073467-exon-scaffold_92-1575043694:259747..260826 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1510915933:264665..264699 | TCONS_00073467-exon-scaffold_92-1510915933:264665..264699 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1510915933:261840..261931 | TCONS_00073467-exon-scaffold_92-1510915933:261840..261931 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1510915933:261184..261339 | TCONS_00073467-exon-scaffold_92-1510915933:261184..261339 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1510915933:259747..260826 | TCONS_00073467-exon-scaffold_92-1510915933:259747..260826 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1491911889:264665..264699 | TCONS_00073467-exon-scaffold_92-1491911889:264665..264699 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1491911889:261840..261931 | TCONS_00073467-exon-scaffold_92-1491911889:261840..261931 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1491911889:261184..261339 | TCONS_00073467-exon-scaffold_92-1491911889:261184..261339 | Clytia hemisphaerica | exon |
| TCONS_00073467-exon-scaffold_92-1491911889:259747..260826 | TCONS_00073467-exon-scaffold_92-1491911889:259747..260826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:259747..264699 - |
Blast
The following BLAST results are available for this feature:
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