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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073458 ID=TCONS_00073458|Name=TCONS_00073458|organism=Clytia hemisphaerica|type=transcript|length=2886bpRun BLAST on NCBI protein sequence of TCONS_00073458-protein >TCONS_00073458-protein ID=TCONS_00073458-protein|Name=TCONS_00073458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MSSTMFLSFNAPIVKRLLQYKVGNGEDVWSEKAIKSLVKKLKKNGGLQELRun BLAST on NCBI transcript from alignment at scaffold_92:89818..126321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073458 ID=TCONS_00073458|Name=TCONS_00073458|organism=Clytia hemisphaerica|type=transcript|length=36504bp|location=Sequence derived from alignment at scaffold_92:89818..126321- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_92:89818..126321- >TCONS_00073458 ID=TCONS_00073458|Name=TCONS_00073458|organism=Clytia hemisphaerica|type=CDS|length=14580bp|location=Sequence derived from alignment at scaffold_92:89818..126321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073458 vs. Swiss-Prot (Human)
Match: SMAD2 (Mothers against decapentaplegic homolog 2 OS=Homo sapiens GN=SMAD2 PE=1 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 1.701e-102 Identity = 154/217 (70.97%), Postives = 175/217 (80.65%), Query Frame = 1
Query: 1186 LTPPNQEIVPDDFDAVLYEEPDEWCSINYNELRQRTGDTFSGTRPVLTVDGYTDPSNTDRFCLGLLSNPNRTDDIEESRRHIGKGVRLYYFGGEVFAECVSDSSIFVQSSNCNRRYGWHPATVCKVPSGCNLKIFNNQEFAKLLADSVHLGFHNVYQLKSMCMIRLSFVKGWGADYRRQTVTSTPCWIEIRLNGPLKWLDKVLVQMGAPGDRVSSNS 1836
L+P N + D V Y EP WCSI Y EL QR G+TF ++P LTVDG+TDPSN++RFCLGLLSN NR +E +RRHIG+GVRLYY GGEVFAEC+SDS+IFVQS NCN+RYGWHPATVCK+P GCNLKIFNNQEFA LLA SV+ GF VYQL MC IR+SFVKGWGA+YRRQTVTSTPCWIE+ LNGPL+WLDKVL QMG+P R SS S
Sbjct: 254 LSPVNHSL---DLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS 467 HSP 2 Score: 166.007 bits (419), Expect = 1.772e-43 Identity = 106/187 (56.68%), Postives = 119/187 (63.64%), Query Frame = 1
Query: 220 MSSTMFLSFNAPIVKRLLQYKVG------------NG-EDVWSEXXXXXXXXXXXXNGGLQELEKAVINQGNNGSTECVTIP------------------------------RSLDGRLQVSHRKGLPHVIYCRLWRWADLQSHHELRAIDSCTYAFNLKRDYVCVNPYHYLRVETPVMPPILVPRQ 651
MSS L F P+VKRLL +K NG E+ W EKA+KSLVKKLKK G L ELEKA+ Q N +T+CVTIP RSLDGRLQVSHRKGLPHVIYCRLWRW DL SHHEL+AI++C YAFNLK+D VCVNPYHY RVETPV+PP+LVPR
Sbjct: 1 MSS--ILPFTPPVVKRLLGWKKSAGGSGGAGGGEQNGQEEKWCEKAVKSLVKKLKKTGRLDELEKAITTQ--NCNTKCVTIPSTCSEIWGLSTPNTIDQWDTTGLYSFSEQTRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELKAIENCEYAFNLKKDEVCVNPYHYQRVETPVLPPVLVPRH 183 The following BLAST results are available for this feature:
BLAST of TCONS_00073458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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