TCONS_00073452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073452
Unique NameTCONS_00073452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073452 ID=TCONS_00073452|Name=TCONS_00073452|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GTTTGATACTGCACGGGGAAGGGGCACGGCTAACATACTGTTTTTATTTG
ACGAACTTTAAAaaaactcaaatcaagaCCCACAAAAACACAGAAATGGC
CGGAAAAGAATTATTGCTCAGTCTTGCATTTATGTCATGTCTCGTATGTT
TAACTAACAGCCGACCCGCCTCACACGACCTTCTAGCAGAACACATCAAA
GAACAAATTCTAACTGACATAGAAAAAAATCCAGGCACTCATATCATGCC
TACAAAAGATTTGATGAAAGAAATATGTCTTGCTAAACCTTTCAACCAAA
CCATATACCATGACAAATGCATTCCTAAAGTCATAGAAAATCGATTCTGT
TACGGACAATGTAATTCTCTCTATATACCGGAGATCAATAGAAGCGGGCA
CATGGCAACGTGTTTTACATGCCAACCGTCAAGCTCGATACACGAACTTG
TTGAATTAGATTGTGTCGTTGATAACCGATTTCGTCAAAAAACGGTTatt
gttgaaaaaattattagTTGTGAATGTAATCAATGCAAGTAGAATGTACC
AGATATTATTGTGTGTTTAATTTCCTTTCTTTCTTCAAAAACGGCCAGCA
TAGCAGAGCAGTTAGGTAACCtttcaataaaataaattttactaCCTTCA
TCTTAACCTGCTGCACCCCTGTCTAAAATTTCCTGCAAATAAGCTATAGT
CCTGTTTCATAGttcgttttctcaaaaaatgtattttttccgGTTAGCCG
GTTCGTTTTTTAACACTCCCATATAAATTAGAAGATACCAGTTGCATTAT
ATCTAAATTCAAAACTGCGGTGAAATATTCCACAGTTTTTCGAATGCTTC
CGTTTATAAATTATAATATGATGAATTTAATTAAATATAATAAACATTCT
CTAACAAATttatatgataaaaaattttgtatttatgtaaatattttaTA
CCCAATATTTAGCAGAAATGTGTATTTAGCTCAAACCATCATGtgtattt
ttatatgaaaagcGATAATATTATCTTTAAGTATAAGAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_92:224475..225947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073452 ID=TCONS_00073452|Name=TCONS_00073452|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at scaffold_92:224475..225947+ (Clytia hemisphaerica)
GTTTGATACTGCACGGGGAAGGGGCACGGCTAACATACTGTTTTTATTTG
ACGAACTTTAAAGTATGATAAATTTCTTTATTAAGCTttaacttttgaga
aaaataggCGTTGGCTAGATATAAGTCTCTTGAAGTGATATGATAATgtc
ttttgaaacttttcaaatttgttttttattattctaCTTCTAAAAATGTT
GCATCTACTTTGGCTGTGGTTTTtgtttgtggtttgatttgtcCAGTGGT
CTGTCACCCCTCTCAGACGTCacttaagagaaaaaaaagtcGTAAACAAC
CTGAAGTCAAATCTTTTCGGGATAAACAATTCCATTGCGTCGTCTCTTAT
ATACACCAGCATTACCTGGTTGTTTGTACAAAAGAATACACCACggaata
ttttaagcttgaaTACAAAGTTACACCGAGTTACTAGAATAACTAGATTG
ATACGATTACCTAATcttcatttcatttttcttttgttttcagaaaactc
aaatcaagaCCCACAAAAACACAGAAATGGCCGGAAAAGAATTATTGCTC
AGTCTTGCATTTATGTCATGTCTCGTATGTTTAACTAACAGCCGACCCGC
CTCACACGACCTTCTAGCAGAACACATCAAAGAACAAATTCTAACTGACA
TAGAAAAAAATCCAGGCACTCATATCATGCCTACAAAAGATTTGATGAAA
GAAATATGTCTTGCTAAACCTTTCAACCAAACCATATACCATGACAAATG
CATTCCTAAAGTCATAGAAAATCGATTCTGTTACGGACAATGTAATTCTC
TCTATATACCGGAGATCAATAGAAGCGGGCACATGGCAACGTGTTTTACA
TGCCAACCGTCAAGCTCGATACACGAACTTGTTGAATTAGATTGTGTCGT
TGATAACCGATTTCGTCAAAAAACGGTTattgttgaaaaaattattagTT
GTGAATGTAATCAATGCAAGTAGAATGTACCAGATATTATTGTGTGTTTA
ATTTCCTTTCTTTCTTCAAAAACGGCCAGCATAGCAGAGCAGTTAGGTAA
CCtttcaataaaataaattttactaCCTTCATCTTAACCTGCTGCACCCC
TGTCTAAAATTTCCTGCAAATAAGCTATAGTCCTGTTTCATAGttcgttt
tctcaaaaaatgtattttttccgGTTAGCCGGTTCGTTTTTTAACACTCC
CATATAAATTAGAAGATACCAGTTGCATTATATCTAAATTCAAAACTGCG
GTGAAATATTCCACAGTTTTTCGAATGCTTCCGTTTATAAATTATAATAT
GATGAATTTAATTAAATATAATAAACATTCTCTAACAAATttatatgata
aaaaattttgtatttatgtaaatattttaTACCCAATATTTAGCAGAAAT
GTGTATTTAGCTCAAACCATCATGtgtatttttatatgaaaagcGATAAT
ATTATCTTTAAGTATAAGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045587XLOC_045587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073452-exon-scaffold_92-1491911889:224475..224536TCONS_00073452-exon-scaffold_92-1491911889:224475..224536Clytia hemisphaericaexon
TCONS_00073452-exon-scaffold_92-1510915933:224475..224536TCONS_00073452-exon-scaffold_92-1510915933:224475..224536Clytia hemisphaericaexon
TCONS_00073452-exon-scaffold_92-1575043694:224475..224536TCONS_00073452-exon-scaffold_92-1575043694:224475..224536Clytia hemisphaericaexon
TCONS_00073452-exon-scaffold_92-1491911889:224968..225947TCONS_00073452-exon-scaffold_92-1491911889:224968..225947Clytia hemisphaericaexon
TCONS_00073452-exon-scaffold_92-1510915933:224968..225947TCONS_00073452-exon-scaffold_92-1510915933:224968..225947Clytia hemisphaericaexon
TCONS_00073452-exon-scaffold_92-1575043694:224968..225947TCONS_00073452-exon-scaffold_92-1575043694:224968..225947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:224475..225947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	14.2179	13.4569	8.10735	9.65002	15.8329	9.46482	1.5179	4.7387	7.24806	5.3722	1.72818	4.52061	0.433724	1.13623e-07	1.29247	0.045062	6.48586e-06	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top