Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073450
Unique NameTCONS_00073450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073450 ID=TCONS_00073450|Name=TCONS_00073450|organism=Clytia hemisphaerica|type=transcript|length=1409bp
TCGCTaaccgctatattttcttaatgattgtttttctccttattgctatc
taagtttcatcatcaggtaggtccattcagcatgttgcttgttttttctT
GTCGTAGGTTGGGTTCATCACCTGACAGCATATTACCGTTCGAAGCCTTA
TTAACGTTGGAGGAACAGCCACTTGTTTGACAACCTGAATACAATGCACA
AATCCCGTTTTGTTAGCGGTGAAGAAAAATATACAGAAAGTAGACGTCAA
AGGCTCGGTCCCAGACCTCAAGACATCAgcacttgatgacgtcattaata
GTATAAATATGGCACGATTTAGAAGAAGTATCTTCAGTATACAGTTGTGA
AGAGCAAGAACAAACCAACGGTTCTGAAGTGATATTTAAGTGCTACGATC
AAGAATAGCCGTTTATCATCTATAAAAAGaaaactcaaatcaagaCCCAC
AAAAACACAGAAATGGCCGGAAAAGAATTATTGCTCAGTCTTGCATTTAT
GTCATGTCTCGTATGTTTAACTAACAGCCGACCCGCCTCACACGACCTTC
TAGCAGAACACATCAAAGAACAAATTCTAACTGACATAGAAAAAAATCCA
GGCACTCATATCATGCCTACAAAAGATTTGATGAAAGAAATATGTCTTGC
TAAACCTTTCAACCAAACCATATACCATGACAAATGCATTCCTAAAGTCA
TAGAAAATCGATTCTGTTACGGACAATGTAATTCTCTCTATATACCGGAG
ATCAATAGAAGCGGGCACATGGCAACGTGTTTTACATGCCAACCGTCAAG
CTCGATACACGAACTTGTTGAATTAGATTGTGTCGTTGATAACCGATTTC
GTCAAAAAACGGTTattgttgaaaaaattattagTTGTGAATGTAATCAA
TGCAAGTAGAATGTACCAGATATTATTGTGTGTTTAATTTCCTTTCTTTC
TTCAAAAACGGCCAGCATAGCAGAGCAGTTAGGTAACCtttcaataaaat
aaattttactaCCTTCATCTTAACCTGCTGCACCCCTGTCTAAAATTTCC
TGCAAATAAGCTATAGTCCTGTTTCATAGttcgttttctcaaaaaatgta
ttttttccgGTTAGCCGGTTCGTTTTTTAACACTCCCATATAAATTAGAA
GATACCAGTTGCATTATATCTAAATTCAAAACTGCGGTGAAATATTCCAC
AGTTTTTCGAATGCTTCCGTTTATAAATTATAATATGATGAATTTAATTA
AATATAATAAACATTCTCTAACAAATttatatgataaaaaattttgtatt
tatgtaaatattttaTACCCAATATTTAGCAGAAATGTGTATTTAGCTCA
AACCATCATGtgtatttttatatgaaaagcGATAATATTATCTTTAAGTA
TAAGAATTT
Run BLAST on NCBI

protein sequence of Cerberus family protein

>TCONS_00073450-protein ID=TCONS_00073450-protein|Name=Cerberus family protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MAGKELLLSLAFMSCLVCLTNSRPASHDLLAEHIKEQILTDIEKNPGTHI
MPTKDLMKEICLAKPFNQTIYHDKCIPKVIENRFCYGQCNSLYIPEINRS
GHMATCFTCQPSSSIHELVELDCVVDNRFRQKTVIVEKIISCECNQCK
Run BLAST on NCBI

transcript from alignment at scaffold_92:222730..225947+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073450 ID=TCONS_00073450|Name=TCONS_00073450|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at scaffold_92:222730..225947+ (Clytia hemisphaerica)
TCGCTaaccgctatattttcttaatgattgtttttctccttattgctatc taagtttcatcatcaggtaggtccattcagcatgttgcttgttttttctT GTCGTAGGTTGGGTTCATCACCTGACAGCATATTACCGTTCGAAGCCTTA TTAACGTTGGAGGAACAGCCACTTGTTTGACAACCTGAATACAATGCACA AATCCCGTTTTGTTAGCGGTGAAGAAAAATATACAGGTATACTAAAATTT CTACTCTCTTATTAATTGCAAGGGCTGGAAATCTCTTAATACGCTTGTCC TCCTTCGGGTTGTGGGTTTTCTATGGTATCGCCCTTAAATTTATCACTTG TACAACAAATAACAAAGGTTTTTTGAAGCTCAGTATGATATTTCAAGTTT GTGTTGACCACTAAAACGATTCTCATTGGGTTAACTTtaactttttcaac caatcaatgcaaatgttttaaaaagattgCATGacttgtttttgtcattt tttgttttgtctgaaagttgaaattgaatttttagggataggaaagaaaa agaaaccgCAAAGTGATAAAGGATATAGCAGTGTACattctcctttttgt ttttAGTATGAGCCTTGTTTACTTACATAAACactgttgtttttttgtta GAAAGTAGACGTCAAAGGCTCGGTCCCAGACCTCAAGACATCAgcacttg atgacgtcattaataGTATAAATATGGCACGATTTAGAAGAAGTATCTTC AGTATACAGTTGTGAAGAGCAAGAACAAACCAACGGTTCTGAAGTGATAT TTAAGTGCTACGATCAAGAATAGCCGTTTATCATCTATAAAAAGGTATAT ACAGTAATAATTTATTGCTTTTATTCAAGACCTATAACTCAGTTTTACAT ACATGTGATTGACAAGCATGTATTAAAGGCTTCTTAAAGGGTAAGCTTCA TTAAAGAGTCAAAATAAGATGAGCTCCCCTCTTGCAagcttttctgtttt tcttgTATTTATAATTTGCGGAAGAGATTATTTCTTCGACGCAACTTCTA CTTTTACTAAATTAATCTATGGCACACCTAGACCTCAGCTTCTCTGTTTC ACGTTTAAGGTAATCCAGTCTTGTAATGGGTTTGATGTGAATTAGAATTA TCAATATTTGGATTTAAAAATTGNGTAATCCAGTCTTGTAATGGGTTTGA TGTGAATTAGAATGATCAATATTtggatttaaaaattgaaattcaatatt ttaatggtttttttttcaaactcgtTCATTCATTCAAACATTTAATGTCT TTcgtcaaaatgcaaaaataatagCACCACCAAATTGAACATTTTTACTG TAAAATGGGTAGATTTTTAGTCATTAATCACTGAGATAGTGGAGGTTCCA TAAGTTACGTTTCCAAACAAGTTCCATCGTCACTCGGATTCCCAGTAGCA ATTTGCGTCATCTCTTGCCTATTTGCGAAAGTAATTCTAAtgaatttatg caaataaatatatagaaataCTCCAGTAACGGATATTCAACTAACAAAAA ATCCAGAATATTCTCAGACTATTGAAACCCAGGCCTCGTTACCGTTCCAG AAGgaaacagtaacgtgtgaataTAGTCTTAAATGATGTTAAAACATTGC AATATTGCTTCAGAAGTAGATGACTTCATTTAAATTATTTGACGTAATAT TTCATTCGCGTTAAGcgacttttaatttttttcaaaaacacattTGTTTG ATACTGCACGGGGAAGGGGCACGGCTAACATACTGTTTTTATTTGACGAA CTTTAAAGTATGATAAATTTCTTTATTAAGCTttaacttttgagaaaaat aggCGTTGGCTAGATATAAGTCTCTTGAAGTGATATGATAATgtcttttg aaacttttcaaatttgttttttattattctaCTTCTAAAAATGTTGCATC TACTTTGGCTGTGGTTTTtgtttgtggtttgatttgtcCAGTGGTCTGTC ACCCCTCTCAGACGTCacttaagagaaaaaaaagtcGTAAACAACCTGAA GTCAAATCTTTTCGGGATAAACAATTCCATTGCGTCGTCTCTTATATACA CCAGCATTACCTGGTTGTTTGTACAAAAGAATACACCACggaatatttta agcttgaaTACAAAGTTACACCGAGTTACTAGAATAACTAGATTGATACG ATTACCTAATcttcatttcatttttcttttgttttcagaaaactcaaatc aagaCCCACAAAAACACAGAAATGGCCGGAAAAGAATTATTGCTCAGTCT TGCATTTATGTCATGTCTCGTATGTTTAACTAACAGCCGACCCGCCTCAC ACGACCTTCTAGCAGAACACATCAAAGAACAAATTCTAACTGACATAGAA AAAAATCCAGGCACTCATATCATGCCTACAAAAGATTTGATGAAAGAAAT ATGTCTTGCTAAACCTTTCAACCAAACCATATACCATGACAAATGCATTC CTAAAGTCATAGAAAATCGATTCTGTTACGGACAATGTAATTCTCTCTAT ATACCGGAGATCAATAGAAGCGGGCACATGGCAACGTGTTTTACATGCCA ACCGTCAAGCTCGATACACGAACTTGTTGAATTAGATTGTGTCGTTGATA ACCGATTTCGTCAAAAAACGGTTattgttgaaaaaattattagTTGTGAA TGTAATCAATGCAAGTAGAATGTACCAGATATTATTGTGTGTTTAATTTC CTTTCTTTCTTCAAAAACGGCCAGCATAGCAGAGCAGTTAGGTAACCttt caataaaataaattttactaCCTTCATCTTAACCTGCTGCACCCCTGTCT AAAATTTCCTGCAAATAAGCTATAGTCCTGTTTCATAGttcgttttctca aaaaatgtattttttccgGTTAGCCGGTTCGTTTTTTAACACTCCCATAT AAATTAGAAGATACCAGTTGCATTATATCTAAATTCAAAACTGCGGTGAA ATATTCCACAGTTTTTCGAATGCTTCCGTTTATAAATTATAATATGATGA ATTTAATTAAATATAATAAACATTCTCTAACAAATttatatgataaaaaa ttttgtatttatgtaaatattttaTACCCAATATTTAGCAGAAATGTGTA TTTAGCTCAAACCATCATGtgtatttttatatgaaaagcGATAATATTAT CTTTAAGTATAAGAATTT

Coding sequence (CDS) from alignment at scaffold_92:222730..225947+

>TCONS_00073450 ID=TCONS_00073450|Name=TCONS_00073450|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_92:222730..225947+ (Clytia hemisphaerica)
ATGGCCGGAAAAGAATTATTGCTCAGTCTTGCATTTATGTCATGTCTCGT
ATGTTTAACTAACAGCCGACCCGCCTCACACGACCTTCTAGCAGAACACA
TCAAAGAACAAATTCTAACTGACATAGAAAAAAATCCAGGCACTCATATC
ATGCCTACAAAAGATTTGATGAAAGAAATATGTCTTGCTAAACCTTTCAA
CCAAACCATATACCATGACAAATGCATTCCTAAAGTCATAGAAAATCGAT
TCTGTTACGGACAATGTAATTCTCTCTATATACCGGAGATCAATAGAAGC
GGGCACATGGCAACGTGTTTTACATGCCAACCGTCAAGCTCGATACACGA
ACTTGTTGAATTAGATTGTGTCGTTGATAACCGATTTCGTCAAAAAACGG
TTattgttgaaaaaattattagTTGTGAATGTAATCAATGCAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045587XLOC_045587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073450-exon-scaffold_92-1491911889:222730..222965TCONS_00073450-exon-scaffold_92-1491911889:222730..222965Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1510915933:222730..222965TCONS_00073450-exon-scaffold_92-1510915933:222730..222965Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1575043694:222730..222965TCONS_00073450-exon-scaffold_92-1575043694:222730..222965Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1491911889:223381..223573TCONS_00073450-exon-scaffold_92-1491911889:223381..223573Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1510915933:223381..223573TCONS_00073450-exon-scaffold_92-1510915933:223381..223573Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1575043694:223381..223573TCONS_00073450-exon-scaffold_92-1575043694:223381..223573Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1491911889:224968..225947TCONS_00073450-exon-scaffold_92-1491911889:224968..225947Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1510915933:224968..225947TCONS_00073450-exon-scaffold_92-1510915933:224968..225947Clytia hemisphaericaexon
TCONS_00073450-exon-scaffold_92-1575043694:224968..225947TCONS_00073450-exon-scaffold_92-1575043694:224968..225947Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Cerberus family proteinTCONS_00073450-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:222730..225947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99716 2.9777 0.470509 0.465099 1.39544 1.29173 2.07006 2.20977 1.9025 1.75058 2.37412 2.61164 11.19 7.0757 5.65345 7.45324 10.3205 7.01883 2.78317 4.83228 8.07043 7.28169 8.86863 6.35654 10.5866 4.16441 1.80272 2.261 2.47481 2.37059
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR029034Cystine-knot_cytokine
IPR004133DAN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top