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TCONS_00073449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073449
Unique NameTCONS_00073449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073449 ID=TCONS_00073449|Name=TCONS_00073449|organism=Clytia hemisphaerica|type=transcript|length=726bp
TCGCTaaccgctatattttcttaatgattgtttttctccttattgctatc
taagtttcatcatcaggtaggtccattcagcatgttgcttgttttttctT
GTCGTAGGTTGGGTTCATCACCTGACAGCATATTACCGTTCGAAGCCTTA
TTAACGTTGGAGGAACAGCCACTTGTTTGACAACCTGAATACAATGCACA
AATCCCGTTTTGTTAGCGGTGAAGAAAAATATACAGAAAGTAGACGTCAA
AGGCTCGGTCCCAGACCTCAAGACATCAgcacttgatgacgtcattaata
GTATAAATATGGCACGATTTAGAAGAAGTATCTTCAGTATACAGTTGTGA
AGAGCAAGAACAAACCAACGGTTCTGAAGTGATATTTAAGTGCTACGATC
AAGAATAGCCGTTTATCATCTATAAAAAGGTATATACAGTAATAATTTAT
TGCTTTTATTCAAGACCTATAACTCAGTTTTACATACATGTGATTGACAA
GCATGTATTAAAGGCTTCTTAAAGGGTAAGCTTCATTAAAGAGTCAAAAT
AAGATGAGCTCCCCTCTTGCAagcttttctgtttttcttgTATTTATAAT
TTGCGGAAGAGATTATTTCTTCGACGCAACTTCTACTTTTACTAAATTAA
TCTATGGCACACCTAGACCTCAGCTTCTCTGTTTCACGTTTAAGGTAATC
CAGTCTTGTAATGGGTTTGATGTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_92:222730..223870+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073449 ID=TCONS_00073449|Name=TCONS_00073449|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at scaffold_92:222730..223870+ (Clytia hemisphaerica)
TCGCTaaccgctatattttcttaatgattgtttttctccttattgctatc taagtttcatcatcaggtaggtccattcagcatgttgcttgttttttctT GTCGTAGGTTGGGTTCATCACCTGACAGCATATTACCGTTCGAAGCCTTA TTAACGTTGGAGGAACAGCCACTTGTTTGACAACCTGAATACAATGCACA AATCCCGTTTTGTTAGCGGTGAAGAAAAATATACAGGTATACTAAAATTT CTACTCTCTTATTAATTGCAAGGGCTGGAAATCTCTTAATACGCTTGTCC TCCTTCGGGTTGTGGGTTTTCTATGGTATCGCCCTTAAATTTATCACTTG TACAACAAATAACAAAGGTTTTTTGAAGCTCAGTATGATATTTCAAGTTT GTGTTGACCACTAAAACGATTCTCATTGGGTTAACTTtaactttttcaac caatcaatgcaaatgttttaaaaagattgCATGacttgtttttgtcattt tttgttttgtctgaaagttgaaattgaatttttagggataggaaagaaaa agaaaccgCAAAGTGATAAAGGATATAGCAGTGTACattctcctttttgt ttttAGTATGAGCCTTGTTTACTTACATAAACactgttgtttttttgtta GAAAGTAGACGTCAAAGGCTCGGTCCCAGACCTCAAGACATCAgcacttg atgacgtcattaataGTATAAATATGGCACGATTTAGAAGAAGTATCTTC AGTATACAGTTGTGAAGAGCAAGAACAAACCAACGGTTCTGAAGTGATAT TTAAGTGCTACGATCAAGAATAGCCGTTTATCATCTATAAAAAGGTATAT ACAGTAATAATTTATTGCTTTTATTCAAGACCTATAACTCAGTTTTACAT ACATGTGATTGACAAGCATGTATTAAAGGCTTCTTAAAGGGTAAGCTTCA TTAAAGAGTCAAAATAAGATGAGCTCCCCTCTTGCAagcttttctgtttt tcttgTATTTATAATTTGCGGAAGAGATTATTTCTTCGACGCAACTTCTA CTTTTACTAAATTAATCTATGGCACACCTAGACCTCAGCTTCTCTGTTTC ACGTTTAAGGTAATCCAGTCTTGTAATGGGTTTGATGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045587XLOC_045587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073449-exon-scaffold_92-1491911889:222730..222965TCONS_00073449-exon-scaffold_92-1491911889:222730..222965Clytia hemisphaericaexon
TCONS_00073449-exon-scaffold_92-1510915933:222730..222965TCONS_00073449-exon-scaffold_92-1510915933:222730..222965Clytia hemisphaericaexon
TCONS_00073449-exon-scaffold_92-1575043694:222730..222965TCONS_00073449-exon-scaffold_92-1575043694:222730..222965Clytia hemisphaericaexon
TCONS_00073449-exon-scaffold_92-1491911889:223381..223870TCONS_00073449-exon-scaffold_92-1491911889:223381..223870Clytia hemisphaericaexon
TCONS_00073449-exon-scaffold_92-1510915933:223381..223870TCONS_00073449-exon-scaffold_92-1510915933:223381..223870Clytia hemisphaericaexon
TCONS_00073449-exon-scaffold_92-1575043694:223381..223870TCONS_00073449-exon-scaffold_92-1575043694:223381..223870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:222730..223870 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 1.57423 1.5217 0 0 0.147832 0 0.222867 0.597831 0 0.921512 0.387509 0 0.203554 0.617767 0.259429 0.598378 0.222036 0.114111 0.626493 0.457386 0.424316 0.341859 0 0 0.170735 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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