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TCONS_00073446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073446
Unique NameTCONS_00073446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073446 ID=TCONS_00073446|Name=TCONS_00073446|organism=Clytia hemisphaerica|type=transcript|length=1978bp
AGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTGAGATTATCTCA
GCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTAGAGCAGAAAAC
CGTTCAACCAAAATTTGAGACATTAGATGATTGACTATAACTTTGTGATG
TTATTCGAGATCTTTATATctaaggagaaaaaaacaatgtgGTAGTAATT
CGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGAAATGTCTGGAA
TTAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGT
GTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTAT
CGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGT
TATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACT
CGCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttgaaaaat
gaagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGAT
GTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCA
AAGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaa
acgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGATCAAACT
CCAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGA
ACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATA
TCACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGATCGACA
TTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCA
CCGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTC
GTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTG
CAACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCG
CAGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAA
AAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTC
AAGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACTGGACAG
CTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACG
TCATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGC
CAAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTGGAGCAG
CAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATTTCAGTG
GATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatg
cTATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCGAAAATT
CAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTT
TATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACAAACG
CATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCATCGCCAA
AAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGACTTATAT
AATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCAAATT
CATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCAATGT
GGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGTTGAT
CCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACAAACC
TCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGATACG
GCTGATATTTTTACCTCCAATTGTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_92:176420..181990+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073446 ID=TCONS_00073446|Name=TCONS_00073446|organism=Clytia hemisphaerica|type=transcript|length=5571bp|location=Sequence derived from alignment at scaffold_92:176420..181990+ (Clytia hemisphaerica)
AGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTGAGATTATCTCA GCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTAGAGCAGAAAAC CGTTCAACCAAAATTTGAGACATTAGATGATTGACTATAACTTTGTGATG TTATTCGAGATCTTTATATctaaggagaaaaaaacaatgtgGTAGTAATT CGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGAAATGTCTGGAA TTAGGTAAAAGTCTGCAAATGTTTGGAAAGTCCGGAAAAAGTCTAAAATT GGTATACTTGTTTAGAAAAGTCTGGAATTAACGTACATAGTTAACTTTCT GGAGATAGGAAACTTTCCTTCTGTNTAAAATTGGTATACTTGTTTAGAAA AGTCTGGAATTAATGTACATAGTTAACTTTCTGGAGATAGGAAACTTTCA TTCTGTCAGcatttgaaatttccaaaaactgGCCTTTCAAATCACCatta aagaaaaactaaaaacctTCCGAATTGATAAAATGTTTGGGTAATATTGG GTATTTTACCAAAATATCTGaaacatttttgacattttcatatAAAATAT CTTGAAATATGTGGCTTTTGAGACTAAAAGTCTGGAATTTCAACTAGGCA AACCTGTAGCAACCTGTTAAAACTATTTGAcatcaaaaaagtaaaacata tAGATAAAAATTGAGGGAAAAATATTGAGTACTTATTTTGGAATCCTTAT AATTTAGAGACTGAGTGGACGGtgtgtttaaaaatctttaccggacgtgt ccgagaataatttatatattgatgacgtcacaagcaaaagtgAAGAATTG ATTTTGCAGAATTATAAAGTTTTATATACCATTTAATGCATTTTTAGATC ACATCagtccaaaaaaataaaaatttgaatatgaaaaatgacgtcatttt tgaagaattttaaaagaatcacaATCTTAATTTTATTGAGTTAGGTTTAG AAATCGAATATATCCGTCTAAATGTGTTCTATATAGTCGAGtcgagcttt cgaatggtataaaTCGTTTTTCGTTTTGACGACGTTcaaatttgacattt tcaggTTACCTCTAACCCCCTAAAGATTTTAGTCATAGCTCTTGaaatct agaagagctatggacCTTTATAACTTTTCATATAATCTTTACTCGTTGAG ACTGATGCGATTTGGAATCTACTTGCCATGCgctgaaatcaaattttaag tggtggtgacgtcatcagctgacAAAACATTACCGGACGTGTCAGTTGAA TATTTTGTCGGACGCCGACTAAAATATTTAAGATCAGTTGATATACAGGA ATGCAAGAAAAACCAACTCAGTATTTGTTTCAAACTCATCCAAATTTTAG AAATCATCAGCTGCCTGTCTGAAAAACGAGCCACTTTTTATAACCATTTG TGAAATAATTTGTGAGCCAGAGGCGTGTACAAATATCAAAAGGGTTAAAG GCTTGTTTTAATGATATACATAGAAAATTCTGGTCTTAAAAGGTGAATTT GTTATCAAATCCGAAGAAGAAAATATATTGAAGATATTCTTCTAACCTTC AAAGGCCAATCTACCTTATTGAACAATAAACGAGATAAGTCAAGAGCTAA TATCGCCTAcaaaaaaatgaattgaatttCGTGCTTAGTAGTAAACTTTA TAGATTACTAAACTATTTTTCCCTCTCTAACTCTTCATAACAAGAGCACC TTATTGATCTTTCAAGAAAGGGGAAGATTTTTTCTCCAATCAAATCTTGT TTCAAGACCCAAGAATCAGAAAAATAATCTTCTAATCTTTCTTCGAGTtt aacttttcaaaatatttttatcgaAAAGTTTGTTTTATCTCCTCATGTGA GGAAAGAGTTTTGGACTACCCTCCAGTTAGATGACTTTAGGGCCCCATTT TGACGTTGTTAAACTATATGACGCTTTATAGCAATGTTTTTCATGGAGAT CATAACTTTCGTATAACATTTTTGTTGATTATTTCCCTTCAGAGCATCAA GAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGTGTCTTCTGTTGT GCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTATCGAGCTCCTGAG GATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGTTATTCCACAAGA TAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTCGCCGGGCGATC TATTGATAGACTTAGAGAggaaaatacttttgaaaaatgaagtttcGAAT GCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGATGTCACAACTAGA GAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCAAAGTAAACCGAA ACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaaacgaaatcgaaa gtaaacgAACCAAAACCACCGGCAACAAAGATCAAACTCCAAACAAGAGA TTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGAACAAATTGACTG AAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATATCACATTTGAAA TATAACAAGCGCATTTTAGATATTGAAAGGGATCGACATTTATTGATGGA GCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCACCGATCAACTTA TGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTCGTCAGTGGTTCT AATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGCAACGTTGATAA ATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCGCAGACGCTCTTT ATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAAAAGAATATTAAT AAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCAAGAAATTACCC ATCTATATCTATCTTACCCGATGGATTGAACTGGACAGCTTCTTATCGCG TCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACGTCATTTCTAAAT GTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGCCAAAGgtaaaac aaagatggcggcttGGTATGTTTCGAACTGTGGAGCAGCAAGTGGTCGTA AAAATTACGTCAAAGAACTACAGAAATATATTTCAGTGGATATTTACGGA CGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatgcTATGACCAATT GAACAATGATTACAAATTTTATTTGGCCTTCGAAAATTCAAATTGTAAAG ACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTGTAAGTTCAAATT TTTCGTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAAACAAGGTCATT GTGGTTGAGGGCCAGGCCTTTCTTTCttacaaataaaaaattaatgcCGG TACTGCATTGTacattaagggaagaaatttcggcgggaatttaatttggc ggatggtggaAAAAAGTAAATTTGGCGAGAAATTATTGTCGGATTTTGGC CAAATCCACCAAATCCGCCAAGTTTTCTTTTCGCCGAATTACCTCTCTGG TAAAGTCCttaattaaattttaattatcttaaattttaaattttaattaa tgaagggagtggtcagaaagtatctactagggggggtTTGGGCTGGAGGA TTTCAGTTGGGgttcgaaattatttttgagggtttagggggggggttcca gaaaaaaatcctcAATGGGAAAGGGGGGTGCGAAATATTTTTGGGCAACT TAGGAGGTCAAATTCCATGACATTATTCGTATTTCGTATTATCGTTAATT CTGTCTTCATGAAATATCATTGTGATAGCCTCACCATTTCGCGATTTCTA TAATATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCCCCCCTCATACA ATTTCACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAGCTGAAAATACA GTGCTTTTAGCGAACAAAGTGGTcgaaaattgcaatttttctcCTGTCgt cgcaaaccatggttgcgcctcccgggggggggggcagccaggcaaattga ccgacgggtatgtgcggcggctaagggtctatttttcaagatagcagaaa tgcactgtaagggtagactTTTTGTTatatgcactgtaagggtggaaatt ttagtaaatcaaggaaaaattaagattttttgcccaaaaagtctgatttt tttgctctaaaagggttgaaaatttgaagaaaatgcactgtaagggtatg aatttgaCGGAATTTCGCCgattttttgctgcactgtaagggtgcgattt taaaagccaattttttcgccgcacataccgtcagttggcaaacccagtgc cccccccccgggttgcGCCTTCTTAATCTTTGATATTACTCCTGTTATAT TAAGGTATTGTATATGCAAAGAAATAATCTTTACTTTTAAATTCCATATG GGCAAAATTAAtctcgtcggcgcaaaccatggttgcgcctcttTCGTCAC TAAATTNcagttgaaaacaaaaataaacgaGGCAAAGTGGGCCTACTAAT TGCGAGGGTGTCGAATACCACGTGATCAATAAACCATGTTTGCGCCCCCT TCGTCACTAAATTCTTTGCCCCTGCACGTTTGAAATCAAGCCACTTGCTT TCTTCTTTATATTAATGTAGTCCTCCCCACATGAGTGCACAACATTTGAT ACTGAGGCTTATAGTTATAGGATCACTCATAATCTGGAAATTTACTGTAG TTAAACCCGATTTATATGTCTGACAAGTCGCCCTTATCCAATTTTAGCAA GGAGGGAGGGGTTACGAAggtttttttaacccttttgaaggggggggttc gaaaaacAGGTTAAGGGTGCGGgtgtgaattttttttggattttttgaaa tatcctcaactcccccctagtagatactttctgaccactccctaactCAT TCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTAAATCTATTAAAAT CTGTTACTTTTCTTGTAATTTGGTGATGTCAATGAGTGTTCCAGATGATA GCTCTGAAATAAATCCCTCtgataatttcttttctttcataGTTATCGTA TTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACAAACGCATTGTC CCTCCACACAGTTACATTCACACCGACCAATTCGCATCGCCAAAAGAACT GGCGGAATATCTCATCTTTTTAGATCAACATGATGACTTATATAATCAAT ACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCAAATTCATGTGC CGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCAATGTGGTATAG CGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGTTGATCCCACCA AAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACAAACCTCTCCCG AAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGATACGGCTGATA TTTTTACCTCCAATTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045585XLOC_045585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073446-exon-scaffold_92-1491911889:176420..176673TCONS_00073446-exon-scaffold_92-1491911889:176420..176673Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1510915933:176420..176673TCONS_00073446-exon-scaffold_92-1510915933:176420..176673Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1575043694:176420..176673TCONS_00073446-exon-scaffold_92-1575043694:176420..176673Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1491911889:178462..179756TCONS_00073446-exon-scaffold_92-1491911889:178462..179756Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1510915933:178462..179756TCONS_00073446-exon-scaffold_92-1510915933:178462..179756Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1575043694:178462..179756TCONS_00073446-exon-scaffold_92-1575043694:178462..179756Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1491911889:181562..181990TCONS_00073446-exon-scaffold_92-1491911889:181562..181990Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1510915933:181562..181990TCONS_00073446-exon-scaffold_92-1510915933:181562..181990Clytia hemisphaericaexon
TCONS_00073446-exon-scaffold_92-1575043694:181562..181990TCONS_00073446-exon-scaffold_92-1575043694:181562..181990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:176420..181990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.113538 0.272915 0 0 0 0.396812 0 0 0.162641 0.270705 0 0 0 0 0.427309 0 0 0 1.49249 1.24142 0.591929 0 0.52904 1.18043 0 0.933331 0 0
Blast
BLAST of TCONS_00073446 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.389e-34
Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 3
Query: 1014 CFITSNPKYASVADALYVEHKM----PYRFLREKNINKNRVNMVFQLESSRNYPSISILPDGLNWTASYRVDSVLYAPYERFTSFLNVTELPTKPKENYAKGKTKMAAWYVSNCGAASGRKNYVKELQKYISVDIYGRCGXXXXXXXXXXYDQLNNDYKFYLAFENSNCKDYFTEKVYWNGLFYRIIPVVFGAHPDEYKRIVPPHSYIHTDQFASPKELAEYLIFLDQHDDLYNQYFLWKDT---GSFINTKFMCRMC 1766
            C IT++ K    ADA+ V H+     P   L      + +  + F +ES  +   +  +    N T SYR DS ++ PY     +   +  P  P  N +  KT++ AW VSN G  S R  Y + LQ ++ VD+YGR  KP P+       +  + YKFYLAFENS   DY TEK++ N L    +PVV G     Y+R +PP ++IH D F SPK+LA YL  LD+    Y  YF W++T    SF      C+ C
Sbjct:   90 CNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPW---SGQPAHPPLNLS-AKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHKPLPQGTMM---ETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKAC 340          
The following BLAST results are available for this feature:
BLAST of TCONS_00073446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT61.389e-3436.43Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens G... [more]
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