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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073446 ID=TCONS_00073446|Name=TCONS_00073446|organism=Clytia hemisphaerica|type=transcript|length=1978bp
AGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTGAGATTATCTCA
GCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTAGAGCAGAAAAC
CGTTCAACCAAAATTTGAGACATTAGATGATTGACTATAACTTTGTGATG
TTATTCGAGATCTTTATATctaaggagaaaaaaacaatgtgGTAGTAATT
CGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGAAATGTCTGGAA
TTAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGT
GTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTAT
CGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGT
TATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACT
CGCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttgaaaaat
gaagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGAT
GTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCA
AAGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaa
acgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGATCAAACT
CCAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGA
ACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATA
TCACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGATCGACA
TTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCA
CCGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTC
GTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTG
CAACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCG
CAGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAA
AAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTC
AAGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACTGGACAG
CTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACG
TCATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGC
CAAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTGGAGCAG
CAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATTTCAGTG
GATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatg
cTATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCGAAAATT
CAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTT
TATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACAAACG
CATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCATCGCCAA
AAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGACTTATAT
AATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCAAATT
CATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCAATGT
GGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGTTGAT
CCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACAAACC
TCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGATACG
GCTGATATTTTTACCTCCAATTGTATTT Run BLAST on NCBI transcript from alignment at scaffold_92:176420..181990+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073446 ID=TCONS_00073446|Name=TCONS_00073446|organism=Clytia hemisphaerica|type=transcript|length=5571bp|location=Sequence derived from alignment at scaffold_92:176420..181990+ (Clytia hemisphaerica)
AGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTGAGATTATCTCA
GCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTAGAGCAGAAAAC
CGTTCAACCAAAATTTGAGACATTAGATGATTGACTATAACTTTGTGATG
TTATTCGAGATCTTTATATctaaggagaaaaaaacaatgtgGTAGTAATT
CGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGAAATGTCTGGAA
TTAGGTAAAAGTCTGCAAATGTTTGGAAAGTCCGGAAAAAGTCTAAAATT
GGTATACTTGTTTAGAAAAGTCTGGAATTAACGTACATAGTTAACTTTCT
GGAGATAGGAAACTTTCCTTCTGTNTAAAATTGGTATACTTGTTTAGAAA
AGTCTGGAATTAATGTACATAGTTAACTTTCTGGAGATAGGAAACTTTCA
TTCTGTCAGcatttgaaatttccaaaaactgGCCTTTCAAATCACCatta
aagaaaaactaaaaacctTCCGAATTGATAAAATGTTTGGGTAATATTGG
GTATTTTACCAAAATATCTGaaacatttttgacattttcatatAAAATAT
CTTGAAATATGTGGCTTTTGAGACTAAAAGTCTGGAATTTCAACTAGGCA
AACCTGTAGCAACCTGTTAAAACTATTTGAcatcaaaaaagtaaaacata
tAGATAAAAATTGAGGGAAAAATATTGAGTACTTATTTTGGAATCCTTAT
AATTTAGAGACTGAGTGGACGGtgtgtttaaaaatctttaccggacgtgt
ccgagaataatttatatattgatgacgtcacaagcaaaagtgAAGAATTG
ATTTTGCAGAATTATAAAGTTTTATATACCATTTAATGCATTTTTAGATC
ACATCagtccaaaaaaataaaaatttgaatatgaaaaatgacgtcatttt
tgaagaattttaaaagaatcacaATCTTAATTTTATTGAGTTAGGTTTAG
AAATCGAATATATCCGTCTAAATGTGTTCTATATAGTCGAGtcgagcttt
cgaatggtataaaTCGTTTTTCGTTTTGACGACGTTcaaatttgacattt
tcaggTTACCTCTAACCCCCTAAAGATTTTAGTCATAGCTCTTGaaatct
agaagagctatggacCTTTATAACTTTTCATATAATCTTTACTCGTTGAG
ACTGATGCGATTTGGAATCTACTTGCCATGCgctgaaatcaaattttaag
tggtggtgacgtcatcagctgacAAAACATTACCGGACGTGTCAGTTGAA
TATTTTGTCGGACGCCGACTAAAATATTTAAGATCAGTTGATATACAGGA
ATGCAAGAAAAACCAACTCAGTATTTGTTTCAAACTCATCCAAATTTTAG
AAATCATCAGCTGCCTGTCTGAAAAACGAGCCACTTTTTATAACCATTTG
TGAAATAATTTGTGAGCCAGAGGCGTGTACAAATATCAAAAGGGTTAAAG
GCTTGTTTTAATGATATACATAGAAAATTCTGGTCTTAAAAGGTGAATTT
GTTATCAAATCCGAAGAAGAAAATATATTGAAGATATTCTTCTAACCTTC
AAAGGCCAATCTACCTTATTGAACAATAAACGAGATAAGTCAAGAGCTAA
TATCGCCTAcaaaaaaatgaattgaatttCGTGCTTAGTAGTAAACTTTA
TAGATTACTAAACTATTTTTCCCTCTCTAACTCTTCATAACAAGAGCACC
TTATTGATCTTTCAAGAAAGGGGAAGATTTTTTCTCCAATCAAATCTTGT
TTCAAGACCCAAGAATCAGAAAAATAATCTTCTAATCTTTCTTCGAGTtt
aacttttcaaaatatttttatcgaAAAGTTTGTTTTATCTCCTCATGTGA
GGAAAGAGTTTTGGACTACCCTCCAGTTAGATGACTTTAGGGCCCCATTT
TGACGTTGTTAAACTATATGACGCTTTATAGCAATGTTTTTCATGGAGAT
CATAACTTTCGTATAACATTTTTGTTGATTATTTCCCTTCAGAGCATCAA
GAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGTGTCTTCTGTTGT
GCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTATCGAGCTCCTGAG
GATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGTTATTCCACAAGA
TAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTCGCCGGGCGATC
TATTGATAGACTTAGAGAggaaaatacttttgaaaaatgaagtttcGAAT
GCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGATGTCACAACTAGA
GAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCAAAGTAAACCGAA
ACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaaacgaaatcgaaa
gtaaacgAACCAAAACCACCGGCAACAAAGATCAAACTCCAAACAAGAGA
TTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGAACAAATTGACTG
AAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATATCACATTTGAAA
TATAACAAGCGCATTTTAGATATTGAAAGGGATCGACATTTATTGATGGA
GCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCACCGATCAACTTA
TGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTCGTCAGTGGTTCT
AATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGCAACGTTGATAA
ATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCGCAGACGCTCTTT
ATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAAAAGAATATTAAT
AAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCAAGAAATTACCC
ATCTATATCTATCTTACCCGATGGATTGAACTGGACAGCTTCTTATCGCG
TCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACGTCATTTCTAAAT
GTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGCCAAAGgtaaaac
aaagatggcggcttGGTATGTTTCGAACTGTGGAGCAGCAAGTGGTCGTA
AAAATTACGTCAAAGAACTACAGAAATATATTTCAGTGGATATTTACGGA
CGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatgcTATGACCAATT
GAACAATGATTACAAATTTTATTTGGCCTTCGAAAATTCAAATTGTAAAG
ACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTGTAAGTTCAAATT
TTTCGTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAAACAAGGTCATT
GTGGTTGAGGGCCAGGCCTTTCTTTCttacaaataaaaaattaatgcCGG
TACTGCATTGTacattaagggaagaaatttcggcgggaatttaatttggc
ggatggtggaAAAAAGTAAATTTGGCGAGAAATTATTGTCGGATTTTGGC
CAAATCCACCAAATCCGCCAAGTTTTCTTTTCGCCGAATTACCTCTCTGG
TAAAGTCCttaattaaattttaattatcttaaattttaaattttaattaa
tgaagggagtggtcagaaagtatctactagggggggtTTGGGCTGGAGGA
TTTCAGTTGGGgttcgaaattatttttgagggtttagggggggggttcca
gaaaaaaatcctcAATGGGAAAGGGGGGTGCGAAATATTTTTGGGCAACT
TAGGAGGTCAAATTCCATGACATTATTCGTATTTCGTATTATCGTTAATT
CTGTCTTCATGAAATATCATTGTGATAGCCTCACCATTTCGCGATTTCTA
TAATATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCCCCCCTCATACA
ATTTCACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAGCTGAAAATACA
GTGCTTTTAGCGAACAAAGTGGTcgaaaattgcaatttttctcCTGTCgt
cgcaaaccatggttgcgcctcccgggggggggggcagccaggcaaattga
ccgacgggtatgtgcggcggctaagggtctatttttcaagatagcagaaa
tgcactgtaagggtagactTTTTGTTatatgcactgtaagggtggaaatt
ttagtaaatcaaggaaaaattaagattttttgcccaaaaagtctgatttt
tttgctctaaaagggttgaaaatttgaagaaaatgcactgtaagggtatg
aatttgaCGGAATTTCGCCgattttttgctgcactgtaagggtgcgattt
taaaagccaattttttcgccgcacataccgtcagttggcaaacccagtgc
cccccccccgggttgcGCCTTCTTAATCTTTGATATTACTCCTGTTATAT
TAAGGTATTGTATATGCAAAGAAATAATCTTTACTTTTAAATTCCATATG
GGCAAAATTAAtctcgtcggcgcaaaccatggttgcgcctcttTCGTCAC
TAAATTNcagttgaaaacaaaaataaacgaGGCAAAGTGGGCCTACTAAT
TGCGAGGGTGTCGAATACCACGTGATCAATAAACCATGTTTGCGCCCCCT
TCGTCACTAAATTCTTTGCCCCTGCACGTTTGAAATCAAGCCACTTGCTT
TCTTCTTTATATTAATGTAGTCCTCCCCACATGAGTGCACAACATTTGAT
ACTGAGGCTTATAGTTATAGGATCACTCATAATCTGGAAATTTACTGTAG
TTAAACCCGATTTATATGTCTGACAAGTCGCCCTTATCCAATTTTAGCAA
GGAGGGAGGGGTTACGAAggtttttttaacccttttgaaggggggggttc
gaaaaacAGGTTAAGGGTGCGGgtgtgaattttttttggattttttgaaa
tatcctcaactcccccctagtagatactttctgaccactccctaactCAT
TCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTAAATCTATTAAAAT
CTGTTACTTTTCTTGTAATTTGGTGATGTCAATGAGTGTTCCAGATGATA
GCTCTGAAATAAATCCCTCtgataatttcttttctttcataGTTATCGTA
TTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACAAACGCATTGTC
CCTCCACACAGTTACATTCACACCGACCAATTCGCATCGCCAAAAGAACT
GGCGGAATATCTCATCTTTTTAGATCAACATGATGACTTATATAATCAAT
ACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCAAATTCATGTGC
CGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCAATGTGGTATAG
CGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGTTGATCCCACCA
AAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACAAACCTCTCCCG
AAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGATACGGCTGATA
TTTTTACCTCCAATTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073446-exon-scaffold_92-1491911889:176420..176673 | TCONS_00073446-exon-scaffold_92-1491911889:176420..176673 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1510915933:176420..176673 | TCONS_00073446-exon-scaffold_92-1510915933:176420..176673 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1575043694:176420..176673 | TCONS_00073446-exon-scaffold_92-1575043694:176420..176673 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1491911889:178462..179756 | TCONS_00073446-exon-scaffold_92-1491911889:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1510915933:178462..179756 | TCONS_00073446-exon-scaffold_92-1510915933:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1575043694:178462..179756 | TCONS_00073446-exon-scaffold_92-1575043694:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1491911889:181562..181990 | TCONS_00073446-exon-scaffold_92-1491911889:181562..181990 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1510915933:181562..181990 | TCONS_00073446-exon-scaffold_92-1510915933:181562..181990 | Clytia hemisphaerica | exon |
| TCONS_00073446-exon-scaffold_92-1575043694:181562..181990 | TCONS_00073446-exon-scaffold_92-1575043694:181562..181990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:176420..181990 + |
Blast
BLAST of TCONS_00073446 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.389e-34 Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 3
Query: 1014 CFITSNPKYASVADALYVEHKM----PYRFLREKNINKNRVNMVFQLESSRNYPSISILPDGLNWTASYRVDSVLYAPYERFTSFLNVTELPTKPKENYAKGKTKMAAWYVSNCGAASGRKNYVKELQKYISVDIYGRCGXXXXXXXXXXYDQLNNDYKFYLAFENSNCKDYFTEKVYWNGLFYRIIPVVFGAHPDEYKRIVPPHSYIHTDQFASPKELAEYLIFLDQHDDLYNQYFLWKDT---GSFINTKFMCRMC 1766
C IT++ K ADA+ V H+ P L + + + F +ES + + + N T SYR DS ++ PY + + P P N + KT++ AW VSN G S R Y + LQ ++ VD+YGR KP P+ + + YKFYLAFENS DY TEK++ N L +PVV G Y+R +PP ++IH D F SPK+LA YL LD+ Y YF W++T SF C+ C
Sbjct: 90 CNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPW---SGQPAHPPLNLS-AKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHKPLPQGTMM---ETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKAC 340
The following BLAST results are available for this feature:
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