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TCONS_00073444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073444
Unique NameTCONS_00073444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073444 ID=TCONS_00073444|Name=TCONS_00073444|organism=Clytia hemisphaerica|type=transcript|length=1834bp
TGTTTCAATACAGCACAGATATTTCTTCCTACAATGAACATTGGAGGTAG
GCCATGATCATTGCATGAAATCAACGGTAGCCGAAACACGTCAACCACCA
ATAAGGGAAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCG
AATTGTGTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTG
CGTTATCGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCA
ACATGTTATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGT
TGAACTCGCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttg
aaaaatgaagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAA
ACGGATGTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTG
AAAGCAAAGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTG
TTGAaaacgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGAT
CAAACTCCAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGG
TTTGGAACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAA
AGAATATCACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGA
TCGACATTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACC
GAGTCACCGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACC
ATTTTCGTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGA
CCAGTGCAACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTT
CGGTCGCAGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTA
AGAGAAAAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGA
ATCTTCAAGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACT
GGACAGCTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGT
TTCACGTCATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAA
TTATGCCAAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTG
GAGCAGCAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATT
TCAGTGGATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaa
aaaatgcTATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCG
AAAATTCAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGA
CTTTTTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATA
CAAACGCATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCAT
CGCCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGAC
TTATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACAC
CAAATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCC
CAATGTGGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGT
GTTGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAA
CAAACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGA
GATACGGCTGATATTTTTACCTCCAATTGTATTT
Run BLAST on NCBI

transcript from alignment at scaffold_92:176109..181990+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073444 ID=TCONS_00073444|Name=TCONS_00073444|organism=Clytia hemisphaerica|type=transcript|length=5882bp|location=Sequence derived from alignment at scaffold_92:176109..181990+ (Clytia hemisphaerica)
TGTTTCAATACAGCACAGATATTTCTTCCTACAATGAACATTGGAGGTAG GCCATGATCATTGCATGAAATCAACGGTAGCCGAAACACGTCAACCACCA ATAAGGGAAGGTATGAGATGTGTTTTATATAATACCTTATAAATACAGTT CTTTTATAAACTATGTTAATTGTTTTCTCTTATCAATAAGGGtattaaaa ttgaaatcaaagaaaatctttgattaaAATTTTGTATCTTTCTACAAAGT AATTCGTCATTTTATCAGCACGTAGCTTTTATCATCAATCTGCAACGTTT CATTTGGCCGAAGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTG AGATTATCTCAGCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTA GAGCAGAAAACCGTTCAACCAAAATTTGAGACATTAGATGATTGACTATA ACTTTGTGATGTTATTCGAGATCTTTATATctaaggagaaaaaaacaatg tgGTAGTAATTCGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGA AATGTCTGGAATTAGGTAAAAGTCTGCAAATGTTTGGAAAGTCCGGAAAA AGTCTAAAATTGGTATACTTGTTTAGAAAAGTCTGGAATTAACGTACATA GTTAACTTTCTGGAGATAGGAAACTTTCCTTCTGTNTAAAATTGGTATAC TTGTTTAGAAAAGTCTGGAATTAATGTACATAGTTAACTTTCTGGAGATA GGAAACTTTCATTCTGTCAGcatttgaaatttccaaaaactgGCCTTTCA AATCACCattaaagaaaaactaaaaacctTCCGAATTGATAAAATGTTTG GGTAATATTGGGTATTTTACCAAAATATCTGaaacatttttgacattttc atatAAAATATCTTGAAATATGTGGCTTTTGAGACTAAAAGTCTGGAATT TCAACTAGGCAAACCTGTAGCAACCTGTTAAAACTATTTGAcatcaaaaa agtaaaacatatAGATAAAAATTGAGGGAAAAATATTGAGTACTTATTTT GGAATCCTTATAATTTAGAGACTGAGTGGACGGtgtgtttaaaaatcttt accggacgtgtccgagaataatttatatattgatgacgtcacaagcaaaa gtgAAGAATTGATTTTGCAGAATTATAAAGTTTTATATACCATTTAATGC ATTTTTAGATCACATCagtccaaaaaaataaaaatttgaatatgaaaaat gacgtcatttttgaagaattttaaaagaatcacaATCTTAATTTTATTGA GTTAGGTTTAGAAATCGAATATATCCGTCTAAATGTGTTCTATATAGTCG AGtcgagctttcgaatggtataaaTCGTTTTTCGTTTTGACGACGTTcaa atttgacattttcaggTTACCTCTAACCCCCTAAAGATTTTAGTCATAGC TCTTGaaatctagaagagctatggacCTTTATAACTTTTCATATAATCTT TACTCGTTGAGACTGATGCGATTTGGAATCTACTTGCCATGCgctgaaat caaattttaagtggtggtgacgtcatcagctgacAAAACATTACCGGACG TGTCAGTTGAATATTTTGTCGGACGCCGACTAAAATATTTAAGATCAGTT GATATACAGGAATGCAAGAAAAACCAACTCAGTATTTGTTTCAAACTCAT CCAAATTTTAGAAATCATCAGCTGCCTGTCTGAAAAACGAGCCACTTTTT ATAACCATTTGTGAAATAATTTGTGAGCCAGAGGCGTGTACAAATATCAA AAGGGTTAAAGGCTTGTTTTAATGATATACATAGAAAATTCTGGTCTTAA AAGGTGAATTTGTTATCAAATCCGAAGAAGAAAATATATTGAAGATATTC TTCTAACCTTCAAAGGCCAATCTACCTTATTGAACAATAAACGAGATAAG TCAAGAGCTAATATCGCCTAcaaaaaaatgaattgaatttCGTGCTTAGT AGTAAACTTTATAGATTACTAAACTATTTTTCCCTCTCTAACTCTTCATA ACAAGAGCACCTTATTGATCTTTCAAGAAAGGGGAAGATTTTTTCTCCAA TCAAATCTTGTTTCAAGACCCAAGAATCAGAAAAATAATCTTCTAATCTT TCTTCGAGTttaacttttcaaaatatttttatcgaAAAGTTTGTTTTATC TCCTCATGTGAGGAAAGAGTTTTGGACTACCCTCCAGTTAGATGACTTTA GGGCCCCATTTTGACGTTGTTAAACTATATGACGCTTTATAGCAATGTTT TTCATGGAGATCATAACTTTCGTATAACATTTTTGTTGATTATTTCCCTT CAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGTG TCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTATC GAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGTT ATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTC GCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttgaaaaatg aagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGATG TCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCAA AGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaaa cgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGATCAAACTC CAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGAA CAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATAT CACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGATCGACAT TTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCAC CGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTCG TCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGC AACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCGC AGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAAA AGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCA AGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACTGGACAGC TTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACGT CATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGCC AAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTGGAGCAGC AAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATTTCAGTGG ATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatgc TATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCGAAAATTC AAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTGT AAGTTCAAATTTTTCGTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAA ACAAGGTCATTGTGGTTGAGGGCCAGGCCTTTCTTTCttacaaataaaaa attaatgcCGGTACTGCATTGTacattaagggaagaaatttcggcgggaa tttaatttggcggatggtggaAAAAAGTAAATTTGGCGAGAAATTATTGT CGGATTTTGGCCAAATCCACCAAATCCGCCAAGTTTTCTTTTCGCCGAAT TACCTCTCTGGTAAAGTCCttaattaaattttaattatcttaaattttaa attttaattaatgaagggagtggtcagaaagtatctactagggggggtTT GGGCTGGAGGATTTCAGTTGGGgttcgaaattatttttgagggtttaggg ggggggttccagaaaaaaatcctcAATGGGAAAGGGGGGTGCGAAATATT TTTGGGCAACTTAGGAGGTCAAATTCCATGACATTATTCGTATTTCGTAT TATCGTTAATTCTGTCTTCATGAAATATCATTGTGATAGCCTCACCATTT CGCGATTTCTATAATATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCC CCCCTCATACAATTTCACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAG CTGAAAATACAGTGCTTTTAGCGAACAAAGTGGTcgaaaattgcaatttt tctcCTGTCgtcgcaaaccatggttgcgcctcccgggggggggggcagcc aggcaaattgaccgacgggtatgtgcggcggctaagggtctatttttcaa gatagcagaaatgcactgtaagggtagactTTTTGTTatatgcactgtaa gggtggaaattttagtaaatcaaggaaaaattaagattttttgcccaaaa agtctgatttttttgctctaaaagggttgaaaatttgaagaaaatgcact gtaagggtatgaatttgaCGGAATTTCGCCgattttttgctgcactgtaa gggtgcgattttaaaagccaattttttcgccgcacataccgtcagttggc aaacccagtgccccccccccgggttgcGCCTTCTTAATCTTTGATATTAC TCCTGTTATATTAAGGTATTGTATATGCAAAGAAATAATCTTTACTTTTA AATTCCATATGGGCAAAATTAAtctcgtcggcgcaaaccatggttgcgcc tcttTCGTCACTAAATTNcagttgaaaacaaaaataaacgaGGCAAAGTG GGCCTACTAATTGCGAGGGTGTCGAATACCACGTGATCAATAAACCATGT TTGCGCCCCCTTCGTCACTAAATTCTTTGCCCCTGCACGTTTGAAATCAA GCCACTTGCTTTCTTCTTTATATTAATGTAGTCCTCCCCACATGAGTGCA CAACATTTGATACTGAGGCTTATAGTTATAGGATCACTCATAATCTGGAA ATTTACTGTAGTTAAACCCGATTTATATGTCTGACAAGTCGCCCTTATCC AATTTTAGCAAGGAGGGAGGGGTTACGAAggtttttttaacccttttgaa ggggggggttcgaaaaacAGGTTAAGGGTGCGGgtgtgaattttttttgg attttttgaaatatcctcaactcccccctagtagatactttctgaccact ccctaactCATTCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTAAA TCTATTAAAATCTGTTACTTTTCTTGTAATTTGGTGATGTCAATGAGTGT TCCAGATGATAGCTCTGAAATAAATCCCTCtgataatttcttttctttca taGTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACA AACGCATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCATCG CCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGACTT ATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCA AATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCA ATGTGGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGT TGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACA AACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGA TACGGCTGATATTTTTACCTCCAATTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045585XLOC_045585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073444-exon-scaffold_92-1491911889:176109..176218TCONS_00073444-exon-scaffold_92-1491911889:176109..176218Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1510915933:176109..176218TCONS_00073444-exon-scaffold_92-1510915933:176109..176218Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1575043694:176109..176218TCONS_00073444-exon-scaffold_92-1575043694:176109..176218Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1491911889:178462..179756TCONS_00073444-exon-scaffold_92-1491911889:178462..179756Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1510915933:178462..179756TCONS_00073444-exon-scaffold_92-1510915933:178462..179756Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1575043694:178462..179756TCONS_00073444-exon-scaffold_92-1575043694:178462..179756Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1491911889:181562..181990TCONS_00073444-exon-scaffold_92-1491911889:181562..181990Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1510915933:181562..181990TCONS_00073444-exon-scaffold_92-1510915933:181562..181990Clytia hemisphaericaexon
TCONS_00073444-exon-scaffold_92-1575043694:181562..181990TCONS_00073444-exon-scaffold_92-1575043694:181562..181990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:176109..181990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.383221 0 0.0414832 0.529959 0 0.592367 0.599543 0.77653 1.93703 0 1.20296 0 0 0 0 10.5338 8.51341 0 0.242859 7.74429 12.0818 5.23496 8.64521 6.89126 9.84953 3.54767 3.96802 0.988886 1.00617
Blast
BLAST of TCONS_00073444 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 8.345e-35
Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 3
Query:  870 CFITSNPKYASVADALYVEHKM----PYRFLREKNINKNRVNMVFQLESSRNYPSISILPDGLNWTASYRVDSVLYAPYERFTSFLNVTELPTKPKENYAKGKTKMAAWYVSNCGAASGRKNYVKELQKYISVDIYGRCGXXXXXXXXXXYDQLNNDYKFYLAFENSNCKDYFTEKVYWNGLFYRIIPVVFGAHPDEYKRIVPPHSYIHTDQFASPKELAEYLIFLDQHDDLYNQYFLWKDT---GSFINTKFMCRMC 1622
            C IT++ K    ADA+ V H+     P   L      + +  + F +ES  +   +  +    N T SYR DS ++ PY     +   +  P  P  N +  KT++ AW VSN G  S R  Y + LQ ++ VD+YGR  KP P+       +  + YKFYLAFENS   DY TEK++ N L    +PVV G     Y+R +PP ++IH D F SPK+LA YL  LD+    Y  YF W++T    SF      C+ C
Sbjct:   90 CNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPW---SGQPAHPPLNLS-AKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHKPLPQGTMM---ETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKAC 340          
The following BLAST results are available for this feature:
BLAST of TCONS_00073444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT68.345e-3536.43Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens G... [more]
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