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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073444 ID=TCONS_00073444|Name=TCONS_00073444|organism=Clytia hemisphaerica|type=transcript|length=1834bp
TGTTTCAATACAGCACAGATATTTCTTCCTACAATGAACATTGGAGGTAG
GCCATGATCATTGCATGAAATCAACGGTAGCCGAAACACGTCAACCACCA
ATAAGGGAAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCG
AATTGTGTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTG
CGTTATCGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCA
ACATGTTATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGT
TGAACTCGCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttg
aaaaatgaagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAA
ACGGATGTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTG
AAAGCAAAGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTG
TTGAaaacgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGAT
CAAACTCCAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGG
TTTGGAACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAA
AGAATATCACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGA
TCGACATTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACC
GAGTCACCGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACC
ATTTTCGTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGA
CCAGTGCAACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTT
CGGTCGCAGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTA
AGAGAAAAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGA
ATCTTCAAGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACT
GGACAGCTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGT
TTCACGTCATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAA
TTATGCCAAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTG
GAGCAGCAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATT
TCAGTGGATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaa
aaaatgcTATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCG
AAAATTCAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGA
CTTTTTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATA
CAAACGCATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCAT
CGCCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGAC
TTATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACAC
CAAATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCC
CAATGTGGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGT
GTTGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAA
CAAACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGA
GATACGGCTGATATTTTTACCTCCAATTGTATTT Run BLAST on NCBI transcript from alignment at scaffold_92:176109..181990+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073444 ID=TCONS_00073444|Name=TCONS_00073444|organism=Clytia hemisphaerica|type=transcript|length=5882bp|location=Sequence derived from alignment at scaffold_92:176109..181990+ (Clytia hemisphaerica)
TGTTTCAATACAGCACAGATATTTCTTCCTACAATGAACATTGGAGGTAG
GCCATGATCATTGCATGAAATCAACGGTAGCCGAAACACGTCAACCACCA
ATAAGGGAAGGTATGAGATGTGTTTTATATAATACCTTATAAATACAGTT
CTTTTATAAACTATGTTAATTGTTTTCTCTTATCAATAAGGGtattaaaa
ttgaaatcaaagaaaatctttgattaaAATTTTGTATCTTTCTACAAAGT
AATTCGTCATTTTATCAGCACGTAGCTTTTATCATCAATCTGCAACGTTT
CATTTGGCCGAAGAAAAAGTATCGTGTATGTGGAGTTTGTGAGCTTTTTG
AGATTATCTCAGCGTTTAAGTTTTTTGGGCCAAGGTATAAGTTTCAAGTA
GAGCAGAAAACCGTTCAACCAAAATTTGAGACATTAGATGATTGACTATA
ACTTTGTGATGTTATTCGAGATCTTTATATctaaggagaaaaaaacaatg
tgGTAGTAATTCGCTTTTGACGTTTTATCAGGGCTGCCACGTCTGTCAGA
AATGTCTGGAATTAGGTAAAAGTCTGCAAATGTTTGGAAAGTCCGGAAAA
AGTCTAAAATTGGTATACTTGTTTAGAAAAGTCTGGAATTAACGTACATA
GTTAACTTTCTGGAGATAGGAAACTTTCCTTCTGTNTAAAATTGGTATAC
TTGTTTAGAAAAGTCTGGAATTAATGTACATAGTTAACTTTCTGGAGATA
GGAAACTTTCATTCTGTCAGcatttgaaatttccaaaaactgGCCTTTCA
AATCACCattaaagaaaaactaaaaacctTCCGAATTGATAAAATGTTTG
GGTAATATTGGGTATTTTACCAAAATATCTGaaacatttttgacattttc
atatAAAATATCTTGAAATATGTGGCTTTTGAGACTAAAAGTCTGGAATT
TCAACTAGGCAAACCTGTAGCAACCTGTTAAAACTATTTGAcatcaaaaa
agtaaaacatatAGATAAAAATTGAGGGAAAAATATTGAGTACTTATTTT
GGAATCCTTATAATTTAGAGACTGAGTGGACGGtgtgtttaaaaatcttt
accggacgtgtccgagaataatttatatattgatgacgtcacaagcaaaa
gtgAAGAATTGATTTTGCAGAATTATAAAGTTTTATATACCATTTAATGC
ATTTTTAGATCACATCagtccaaaaaaataaaaatttgaatatgaaaaat
gacgtcatttttgaagaattttaaaagaatcacaATCTTAATTTTATTGA
GTTAGGTTTAGAAATCGAATATATCCGTCTAAATGTGTTCTATATAGTCG
AGtcgagctttcgaatggtataaaTCGTTTTTCGTTTTGACGACGTTcaa
atttgacattttcaggTTACCTCTAACCCCCTAAAGATTTTAGTCATAGC
TCTTGaaatctagaagagctatggacCTTTATAACTTTTCATATAATCTT
TACTCGTTGAGACTGATGCGATTTGGAATCTACTTGCCATGCgctgaaat
caaattttaagtggtggtgacgtcatcagctgacAAAACATTACCGGACG
TGTCAGTTGAATATTTTGTCGGACGCCGACTAAAATATTTAAGATCAGTT
GATATACAGGAATGCAAGAAAAACCAACTCAGTATTTGTTTCAAACTCAT
CCAAATTTTAGAAATCATCAGCTGCCTGTCTGAAAAACGAGCCACTTTTT
ATAACCATTTGTGAAATAATTTGTGAGCCAGAGGCGTGTACAAATATCAA
AAGGGTTAAAGGCTTGTTTTAATGATATACATAGAAAATTCTGGTCTTAA
AAGGTGAATTTGTTATCAAATCCGAAGAAGAAAATATATTGAAGATATTC
TTCTAACCTTCAAAGGCCAATCTACCTTATTGAACAATAAACGAGATAAG
TCAAGAGCTAATATCGCCTAcaaaaaaatgaattgaatttCGTGCTTAGT
AGTAAACTTTATAGATTACTAAACTATTTTTCCCTCTCTAACTCTTCATA
ACAAGAGCACCTTATTGATCTTTCAAGAAAGGGGAAGATTTTTTCTCCAA
TCAAATCTTGTTTCAAGACCCAAGAATCAGAAAAATAATCTTCTAATCTT
TCTTCGAGTttaacttttcaaaatatttttatcgaAAAGTTTGTTTTATC
TCCTCATGTGAGGAAAGAGTTTTGGACTACCCTCCAGTTAGATGACTTTA
GGGCCCCATTTTGACGTTGTTAAACTATATGACGCTTTATAGCAATGTTT
TTCATGGAGATCATAACTTTCGTATAACATTTTTGTTGATTATTTCCCTT
CAGAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGCGAATTGTG
TCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGTGCGTTATC
GAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGCAACATGTT
ATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTC
GCCGGGCGATCTATTGATAGACTTAGAGAggaaaatacttttgaaaaatg
aagtttcGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGAAACGGATG
TCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATTGAAAGCAA
AGTAAACCGAAACGAAGACCTACTTCTTGAAATTGATCGATTGTTGAaaa
cgaaatcgaaagtaaacgAACCAAAACCACCGGCAACAAAGATCAAACTC
CAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAGGTTTGGAA
CAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGAAAGAATAT
CACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGGATCGACAT
TTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGACCGAGTCAC
CGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAACCATTTTCG
TCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGC
AACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCTTCGGTCGC
AGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTTAAGAGAAA
AGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCA
AGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAACTGGACAGC
TTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACGTTTCACGT
CATTTCTAAATGTGACCGAGCTACCCACCAAACCTAAAGAGAATTATGCC
AAAGgtaaaacaaagatggcggcttGGTATGTTTCGAACTGTGGAGCAGC
AAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATATTTCAGTGG
ATATTTACGGACGCTGTGGTAAACCGTGtccgaaaaataacaaaaaatgc
TATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTCGAAAATTC
AAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGGACTTTTGT
AAGTTCAAATTTTTCGTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAA
ACAAGGTCATTGTGGTTGAGGGCCAGGCCTTTCTTTCttacaaataaaaa
attaatgcCGGTACTGCATTGTacattaagggaagaaatttcggcgggaa
tttaatttggcggatggtggaAAAAAGTAAATTTGGCGAGAAATTATTGT
CGGATTTTGGCCAAATCCACCAAATCCGCCAAGTTTTCTTTTCGCCGAAT
TACCTCTCTGGTAAAGTCCttaattaaattttaattatcttaaattttaa
attttaattaatgaagggagtggtcagaaagtatctactagggggggtTT
GGGCTGGAGGATTTCAGTTGGGgttcgaaattatttttgagggtttaggg
ggggggttccagaaaaaaatcctcAATGGGAAAGGGGGGTGCGAAATATT
TTTGGGCAACTTAGGAGGTCAAATTCCATGACATTATTCGTATTTCGTAT
TATCGTTAATTCTGTCTTCATGAAATATCATTGTGATAGCCTCACCATTT
CGCGATTTCTATAATATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCC
CCCCTCATACAATTTCACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAG
CTGAAAATACAGTGCTTTTAGCGAACAAAGTGGTcgaaaattgcaatttt
tctcCTGTCgtcgcaaaccatggttgcgcctcccgggggggggggcagcc
aggcaaattgaccgacgggtatgtgcggcggctaagggtctatttttcaa
gatagcagaaatgcactgtaagggtagactTTTTGTTatatgcactgtaa
gggtggaaattttagtaaatcaaggaaaaattaagattttttgcccaaaa
agtctgatttttttgctctaaaagggttgaaaatttgaagaaaatgcact
gtaagggtatgaatttgaCGGAATTTCGCCgattttttgctgcactgtaa
gggtgcgattttaaaagccaattttttcgccgcacataccgtcagttggc
aaacccagtgccccccccccgggttgcGCCTTCTTAATCTTTGATATTAC
TCCTGTTATATTAAGGTATTGTATATGCAAAGAAATAATCTTTACTTTTA
AATTCCATATGGGCAAAATTAAtctcgtcggcgcaaaccatggttgcgcc
tcttTCGTCACTAAATTNcagttgaaaacaaaaataaacgaGGCAAAGTG
GGCCTACTAATTGCGAGGGTGTCGAATACCACGTGATCAATAAACCATGT
TTGCGCCCCCTTCGTCACTAAATTCTTTGCCCCTGCACGTTTGAAATCAA
GCCACTTGCTTTCTTCTTTATATTAATGTAGTCCTCCCCACATGAGTGCA
CAACATTTGATACTGAGGCTTATAGTTATAGGATCACTCATAATCTGGAA
ATTTACTGTAGTTAAACCCGATTTATATGTCTGACAAGTCGCCCTTATCC
AATTTTAGCAAGGAGGGAGGGGTTACGAAggtttttttaacccttttgaa
ggggggggttcgaaaaacAGGTTAAGGGTGCGGgtgtgaattttttttgg
attttttgaaatatcctcaactcccccctagtagatactttctgaccact
ccctaactCATTCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTAAA
TCTATTAAAATCTGTTACTTTTCTTGTAATTTGGTGATGTCAATGAGTGT
TCCAGATGATAGCTCTGAAATAAATCCCTCtgataatttcttttctttca
taGTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGACGAATACA
AACGCATTGTCCCTCCACACAGTTACATTCACACCGACCAATTCGCATCG
CCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGACTT
ATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACACCA
AATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCCCATTTCCCA
ATGTGGTATAGCGACGCAAACAATTGGTGGAGGAGTAAAGACAATTGTGT
TGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAACA
AACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGAGA
TACGGCTGATATTTTTACCTCCAATTGTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073444-exon-scaffold_92-1491911889:176109..176218 | TCONS_00073444-exon-scaffold_92-1491911889:176109..176218 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1510915933:176109..176218 | TCONS_00073444-exon-scaffold_92-1510915933:176109..176218 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1575043694:176109..176218 | TCONS_00073444-exon-scaffold_92-1575043694:176109..176218 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1491911889:178462..179756 | TCONS_00073444-exon-scaffold_92-1491911889:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1510915933:178462..179756 | TCONS_00073444-exon-scaffold_92-1510915933:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1575043694:178462..179756 | TCONS_00073444-exon-scaffold_92-1575043694:178462..179756 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1491911889:181562..181990 | TCONS_00073444-exon-scaffold_92-1491911889:181562..181990 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1510915933:181562..181990 | TCONS_00073444-exon-scaffold_92-1510915933:181562..181990 | Clytia hemisphaerica | exon |
| TCONS_00073444-exon-scaffold_92-1575043694:181562..181990 | TCONS_00073444-exon-scaffold_92-1575043694:181562..181990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:176109..181990 + |
Blast
BLAST of TCONS_00073444 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 8.345e-35 Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 3
Query: 870 CFITSNPKYASVADALYVEHKM----PYRFLREKNINKNRVNMVFQLESSRNYPSISILPDGLNWTASYRVDSVLYAPYERFTSFLNVTELPTKPKENYAKGKTKMAAWYVSNCGAASGRKNYVKELQKYISVDIYGRCGXXXXXXXXXXYDQLNNDYKFYLAFENSNCKDYFTEKVYWNGLFYRIIPVVFGAHPDEYKRIVPPHSYIHTDQFASPKELAEYLIFLDQHDDLYNQYFLWKDT---GSFINTKFMCRMC 1622
C IT++ K ADA+ V H+ P L + + + F +ES + + + N T SYR DS ++ PY + + P P N + KT++ AW VSN G S R Y + LQ ++ VD+YGR KP P+ + + YKFYLAFENS DY TEK++ N L +PVV G Y+R +PP ++IH D F SPK+LA YL LD+ Y YF W++T SF C+ C
Sbjct: 90 CNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPW---SGQPAHPPLNLS-AKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHKPLPQGTMM---ETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKAC 340
The following BLAST results are available for this feature:
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