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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073442 ID=TCONS_00073442|Name=TCONS_00073442|organism=Clytia hemisphaerica|type=transcript|length=3329bpRun BLAST on NCBI protein sequence of TCONS_00073442-protein >TCONS_00073442-protein ID=TCONS_00073442-protein|Name=TCONS_00073442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp MMCLRFVLDYIMIRLSFPAWRQHFFVLFKNHTVFNLKCNLTNKEISSNMGRun BLAST on NCBI transcript from alignment at scaffold_92:156498..175005+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073442 ID=TCONS_00073442|Name=TCONS_00073442|organism=Clytia hemisphaerica|type=transcript|length=18508bp|location=Sequence derived from alignment at scaffold_92:156498..175005+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_92:156498..175005+ >TCONS_00073442 ID=TCONS_00073442|Name=TCONS_00073442|organism=Clytia hemisphaerica|type=CDS|length=36912bp|location=Sequence derived from alignment at scaffold_92:156498..175005+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073442 vs. Swiss-Prot (Human)
Match: TF3B (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1 PE=1 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 2.877e-94 Identity = 162/303 (53.47%), Postives = 224/303 (73.93%), Query Frame = 3
Query: 756 GVSCKNCGGTEIDHDQARGDXXXXXXXXXXESLCIVNEVEFQENSAGNASVIGQFVSAEGHHSR----AGYKYSLGRDHRQVILDNGKRLINQLGSNLKMTNHCLESAFMFYKMAVSKRFTSGRRTIHVIGACLYLVSRTEKTPHMLLXXXXXXXXXXXTLGRVFLQLARELCIDCPIVDPSLYIHRFAHQLDFGEKENEVSMSALRIMARMKKDWIHFGRRPSALCGAALIIAAKLYNFEVTMKDIVKLVRMSKTTVFKRLMDFSKTATGKLTTDEFKTVDLEEEADPPCYTEGRNRVKFAQ 1652
G C+ CGGT+I+ D ARGD+VC CGSV+E IV+EV+F E+S G +S +GQFVS +G G+ +LG++ R L NG+R I+ LG+ L++ HCL++AF F+KMAVS+ T GR+ HVI ACLYLV RTE TPHMLLD+ D++Q +V LG+ FL LARELCI+ P +DP LYI RFAH L+FGEK +EVSM+ALR++ RMK+DW+H GRRPS LCGAAL++AA++++F T+K+++ +V++ ++T+ KRL +F T T +LT DEF +DLEEE DPP YT G+ +++ Q
Sbjct: 3 GRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQ 305 The following BLAST results are available for this feature:
BLAST of TCONS_00073442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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