TCONS_00073439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073439
Unique NameTCONS_00073439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073439 ID=TCONS_00073439|Name=TCONS_00073439|organism=Clytia hemisphaerica|type=transcript|length=401bp
NATTGAtttgaataaataattattGAACTTGTGCTGCTGAACCTGAACTT
ATTGGACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATT
GATTGAACTTATGCTGTTGAACTTGGAACTCACACGGATACGATTTATGG
ATttacatttgatttgaaaacttttgagaaTTAGAATTTATCGAAAATTG
GAGAACTTTGGATACGAATTTACGAATAATTCCTATCTGTCATTGGGGGA
ATATATCGTCACACATTTGATTTGAGAATTTGATCTTTACACATTTGATT
TTAGGATTTGAGAACTTTGGAGTACATTGTTACACATGATTTGGATACTT
CAGACTTGATTGAGAATTTGAGATTTACGACTTTTAACGAACGGGAACAA
A
Run BLAST on NCBI

transcript from alignment at scaffold_92:54886..55809+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073439 ID=TCONS_00073439|Name=TCONS_00073439|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at scaffold_92:54886..55809+ (Clytia hemisphaerica)
NATTGAtttgaataaataattattGAACTTGTGCTGCTGAACCTGAACTT
ATTGGACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATT
GATTGAACTTATGCTGTTGAACTTGGAACTCACACGGATACGATTTATGG
ATttacatttgatttgaaaacttttgagaaTTAGAATTTATCGAAAATTG
GAGAACTTTGGATACGAATTTACGAATAATTCCTATCTGTCATTGGGGGA
ATATATCGTCACACATTGATTTgagatttgaatttgaaaacttttgacat
TTAGATTGTATCGAAAATTGGAGAAGTTTGGATACAAATTCACGAATAAT
TCCTATCCGTCATTGGGGAATATATCGTCACACATTGATTTGAGATTTGA
ATTGAAAACCTTATAGATTGTATCGAAAATTGGAAGCTTTGGATACAAAT
TTACGAATAATTCCTATCCGTCATTGGGGGATATATCGTCATACAACTTG
ATTTGAGATTTGAGGATACACATTTACGAATAATTCCTATCCGTCATTGG
GGGGATATATCGTCACACATTTGATTTGAGATTTGAGGATACAAATTTAC
GAATAATTCCTATCCGTCATTGGGGGGATATATCGTCACACATTTGATTT
GAGATTTGAGGATACAAATTTACGAATAATTCCTATCCGTCATTGGGGGA
TATATCGTCATACAATTTGATTTGAGATTTGAGGATACACATTTACGAAT
AATTCCTATCCGTCATTGGGGGGATATATCGTCACACATTTGATTTGAGA
ATTTGATCTTTACACATTTGATTTTAGGATTTGAGAACTTTGGAGTACAT
TGTTACACATGATTTGGATACTTCAGACTTGATTGAGAATTTGAGATTTA
CGACTTTTAACGAACGGGAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045582XLOC_045582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073439-exon-scaffold_92-1491911889:54886..55149TCONS_00073439-exon-scaffold_92-1491911889:54886..55149Clytia hemisphaericaexon
TCONS_00073439-exon-scaffold_92-1510915933:54886..55149TCONS_00073439-exon-scaffold_92-1510915933:54886..55149Clytia hemisphaericaexon
TCONS_00073439-exon-scaffold_92-1575043694:54886..55149TCONS_00073439-exon-scaffold_92-1575043694:54886..55149Clytia hemisphaericaexon
TCONS_00073439-exon-scaffold_92-1491911889:55673..55809TCONS_00073439-exon-scaffold_92-1491911889:55673..55809Clytia hemisphaericaexon
TCONS_00073439-exon-scaffold_92-1510915933:55673..55809TCONS_00073439-exon-scaffold_92-1510915933:55673..55809Clytia hemisphaericaexon
TCONS_00073439-exon-scaffold_92-1575043694:55673..55809TCONS_00073439-exon-scaffold_92-1575043694:55673..55809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:54886..55809 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37309	4.686	0.816596	1.90131	23.9097	8.90593	15.0405	22.2646	10.916	13.912	26.5972	9.99538	10.9695	9.71421	33.1835	30.4664	18.5365	15.3708	17.5039	22.9536	84.3337	77.8949	52.1704	41.79	3.05839	6.18409	131.91	108.82	79.4404	80.1648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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