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TCONS_00073438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073438
Unique NameTCONS_00073438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073438 ID=TCONS_00073438|Name=TCONS_00073438|organism=Clytia hemisphaerica|type=transcript|length=805bp
NATTGAtttgaataaataattattGAACTTGTGCTGCTGAACCTGAACTT
ATTGGACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATT
GATTGAACTTATGCTGTTGAACTTGGAACTCACACGGATACGATTTATGG
ATttacatttgatttgaaaacttttgagaaTTAGAATTTATCGAAAATTG
GAGAACTTTGGATACGAATTTACGAATAATTCCTATCTGTCATTGGGGGA
ATATATCGTCACACATTGATTTGAGATTTGAATTGAAAACCTTATAGATT
GTATCGAAAATTGGAAGCTTTGGATACAAATTTACGAATAATTCCTATCC
GTCATTGGGGGATATATCGTCATACAACTTGATTTGAGATTTGAGGATAC
ACATTTACGAATAATTCCTATCCGTCATTGGGGGGATATATCGTCACACA
TTTGATTTGAGATTTGAGGATACAAATTTACGAATAATTCCTATCCGTCA
TTGGGGGGATATATCGTCACACATTTGATTTGAGATTTGAGGATACAAAT
TTACGAATAATTCCTATCCGTCATTGGGGGATATATCGTCATACAATTTG
ATTTGAGATTTGAGGATACACATTTACGAATAATTCCTATCCGTCATTGG
GGGGATATATCGTCACACATTTGATTTGAGAATTTGATCTTTACACATTT
GATTTTAGGATTTGAGAACTTTGGAGTACATTGTTACACATGATTTGGAT
ACTTCAGACTTGATTGAGAATTTGAGATTTACGACTTTTAACGAACGGGA
ACAAA
Run BLAST on NCBI

transcript from alignment at scaffold_92:54886..55809+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073438 ID=TCONS_00073438|Name=TCONS_00073438|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at scaffold_92:54886..55809+ (Clytia hemisphaerica)
NATTGAtttgaataaataattattGAACTTGTGCTGCTGAACCTGAACTT ATTGGACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATT GATTGAACTTATGCTGTTGAACTTGGAACTCACACGGATACGATTTATGG ATttacatttgatttgaaaacttttgagaaTTAGAATTTATCGAAAATTG GAGAACTTTGGATACGAATTTACGAATAATTCCTATCTGTCATTGGGGGA ATATATCGTCACACATTGATTTgagatttgaatttgaaaacttttgacat TTAGATTGTATCGAAAATTGGAGAAGTTTGGATACAAATTCACGAATAAT TCCTATCCGTCATTGGGGAATATATCGTCACACATTGATTTGAGATTTGA ATTGAAAACCTTATAGATTGTATCGAAAATTGGAAGCTTTGGATACAAAT TTACGAATAATTCCTATCCGTCATTGGGGGATATATCGTCATACAACTTG ATTTGAGATTTGAGGATACACATTTACGAATAATTCCTATCCGTCATTGG GGGGATATATCGTCACACATTTGATTTGAGATTTGAGGATACAAATTTAC GAATAATTCCTATCCGTCATTGGGGGGATATATCGTCACACATTTGATTT GAGATTTGAGGATACAAATTTACGAATAATTCCTATCCGTCATTGGGGGA TATATCGTCATACAATTTGATTTGAGATTTGAGGATACACATTTACGAAT AATTCCTATCCGTCATTGGGGGGATATATCGTCACACATTTGATTTGAGA ATTTGATCTTTACACATTTGATTTTAGGATTTGAGAACTTTGGAGTACAT TGTTACACATGATTTGGATACTTCAGACTTGATTGAGAATTTGAGATTTA CGACTTTTAACGAACGGGAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045582XLOC_045582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073438-exon-scaffold_92-1491911889:54886..55149TCONS_00073438-exon-scaffold_92-1491911889:54886..55149Clytia hemisphaericaexon
TCONS_00073438-exon-scaffold_92-1510915933:54886..55149TCONS_00073438-exon-scaffold_92-1510915933:54886..55149Clytia hemisphaericaexon
TCONS_00073438-exon-scaffold_92-1575043694:54886..55149TCONS_00073438-exon-scaffold_92-1575043694:54886..55149Clytia hemisphaericaexon
TCONS_00073438-exon-scaffold_92-1491911889:55269..55809TCONS_00073438-exon-scaffold_92-1491911889:55269..55809Clytia hemisphaericaexon
TCONS_00073438-exon-scaffold_92-1510915933:55269..55809TCONS_00073438-exon-scaffold_92-1510915933:55269..55809Clytia hemisphaericaexon
TCONS_00073438-exon-scaffold_92-1575043694:55269..55809TCONS_00073438-exon-scaffold_92-1575043694:55269..55809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:54886..55809 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56681 1.76134 1.32023 0.545327 21.1719 11.0852 20.3511 20.892 9.4319 7.78761 17.5407 6.48176 7.67194 8.22863 25.3683 25.7851 15.9392 15.3184 12.5703 7.79688 62.2291 53.0451 34.5936 30.6687 5.95979 10.9495 86.1605 80.8707 64.4218 55.0594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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