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TCONS_00073430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073430
Unique NameTCONS_00073430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073430 ID=TCONS_00073430|Name=TCONS_00073430|organism=Clytia hemisphaerica|type=transcript|length=426bp
TNCAGCGAATATCACTCGAAAAGAAACTACGTCGAGAGGGTACACTCTCA
AGAAAACCTTGCACTCTCAAGACATGGCAAGTTTAGCAGCACCATGGTTC
ATAGCAAGAAAGAAAATGGATCAGTGGAACACAAAGAAAACATGGAGGCA
ATGGCACAGGAAGTTATCAAGTGCATTTCAAGTGCAAACTTTGGTGGCTC
ATCGATCACGTGCCAACGTGGCATCGAAGACAACGAGCAATTTTTTAACG
ACGAAGAGGACCTCAAAACCTTTTTATCCCTTTCTGAAAGTCGGAAACAA
GCGTTTGCAAGAAATTACAAACCCTCGAATGGTGAACTATTGAACACACT
TTGTCTACAGTTCGGACTTGATAAAGCTTTTGAAGGTAATTACTACACAT
ATCACAAAGAAATGCTAGCGTCTTGG
Run BLAST on NCBI

protein sequence of TCONS_00073430-protein

>TCONS_00073430-protein ID=TCONS_00073430-protein|Name=TCONS_00073430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
XSEYHSKRNYVERVHSQENLALSRHGKFSSTMVHSKKENGSVEHKENMEA
MAQEVIKCISSANFGGSSITCQRGIEDNEQFFNDEEDLKTFLSLSESRKQ
AFARNYKPSNGELLNTLCLQFGLDKAFEGNYYTYHKEMLASW
Run BLAST on NCBI

transcript from alignment at scaffold_91:209124..209549

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073430 ID=TCONS_00073430|Name=TCONS_00073430|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_91:209124..209549 (Clytia hemisphaerica)
CCAAGACGCTAGCATTTCTTTGTGATATGTGTAGTAATTACCTTCAAAAG CTTTATCAAGTCCGAACTGTAGACAAAGTGTGTTCAATAGTTCACCATTC GAGGGTTTGTAATTTCTTGCAAACGCTTGTTTCCGACTTTCAGAAAGGGA TAAAAAGGTTTTGAGGTCCTCTTCGTCGTTAAAAAATTGCTCGTTGTCTT CGATGCCACGTTGGCACGTGATCGATGAGCCACCAAAGTTTGCACTTGAA ATGCACTTGATAACTTCCTGTGCCATTGCCTCCATGTTTTCTTTGTGTTC CACTGATCCATTTTCTTTCTTGCTATGAACCATGGTGCTGCTAAACTTGC CATGTCTTGAGAGTGCAAGGTTTTCTTGAGAGTGTACCCTCTCGACGTAG TTTCTTTTCGAGTGATATTCGCTGNA

Coding sequence (CDS) from alignment at scaffold_91:209124..209549

>TCONS_00073430 ID=TCONS_00073430|Name=TCONS_00073430|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_91:209124..209549 (Clytia hemisphaerica)
CCAAGACGCTAGCATTTCTTTGTGATATGTGTAGTAATTACCTTCAAAAG
CTTTATCAAGTCCGAACTGTAGACAAAGTGTGTTCAATAGTTCACCATTC
GAGGGTTTGTAATTTCTTGCAAACGCTTGTTTCCGACTTTCAGAAAGGGA
TAAAAAGGTTTTGAGGTCCTCTTCGTCGTTAAAAAATTGCTCGTTGTCTT
CGATGCCACGTTGGCACGTGATCGATGAGCCACCAAAGTTTGCACTTGAA
ATGCACTTGATAACTTCCTGTGCCATTGCCTCCATGTTTTCTTTGTGTTC
CACTGATCCATTTTCTTTCTTGCTATGAACCATGGTGCTGCTAAACTTGC
CATGTCTTGAGAGTGCAAGGTTTTCTTGAGAGTGTACCCTCTCGACGTAG
TTTCTTTTCGAGTGATATTCGCTGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045574XLOC_045574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073430-exon-scaffold_91-1491911889:209124..209549TCONS_00073430-exon-scaffold_91-1491911889:209124..209549Clytia hemisphaericaexon
TCONS_00073430-exon-scaffold_91-1510915933:209124..209549TCONS_00073430-exon-scaffold_91-1510915933:209124..209549Clytia hemisphaericaexon
TCONS_00073430-exon-scaffold_91-1575043694:209124..209549TCONS_00073430-exon-scaffold_91-1575043694:209124..209549Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073430-proteinTCONS_00073430-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:209124..209549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.440956 0.348449 0.630584 1.77104 1.37771 1.02391 0.828196 1.63327 0.6524 1.12921 0 0 0 0 0 0 0 0 0.187457 0.170425 1.57981 2.97654 0 0 0.181463 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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