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TCONS_00073424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073424
Unique NameTCONS_00073424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073424 ID=TCONS_00073424|Name=TCONS_00073424|organism=Clytia hemisphaerica|type=transcript|length=339bp
CTCGCTTTCTCTTTTCATACGGCTGTCCTCCTATAATTATCTACTTTTAT
CTAcgttggagtgcaatttctacgCTTATACGGCAAAAAGTATATTCAAT
AGAATGCTCTCTCATTTCCtgtgttaaaaacaaaatagtGAGAGTTTCGT
GGTCGCACGGCTTTTTTAAAATATCCTCTCAAtatcttgattttgtttga
gatataGATCTTTAGTATATACAACCAAGGGGATGTAAATAAACCTTCGA
GAAGTCGAAGGCAAAATGGTAGATAAGATACGGTAGAAATGAACGAAGAT
CTTAGTCACTACAGTTAACAGTAGGATCAGTGGTAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_91:113147..113485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073424 ID=TCONS_00073424|Name=TCONS_00073424|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_91:113147..113485 (Clytia hemisphaerica)
CTTTTACCACTGATCCTACTGTTAACTGTAGTGACTAAGATCTTCGTTCA TTTCTACCGTATCTTATCTACCATTTTGCCTTCGACTTCTCGAAGGTTTA TTTACATCCCCTTGGTTGTATATACTAAAGATCtatatctcaaacaaaat caagataTTGAGAGGATATTTTAAAAAAGCCGTGCGACCACGAAACTCTC actattttgtttttaacacaGGAAATGAGAGAGCATTCTATTGAATATAC TTTTTGCCGTATAAGcgtagaaattgcactccaacgTAGATAAAAGTAGA TAATTATAGGAGGACAGCCGTATGAAAAGAGAAAGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045568XLOC_045568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073424-exon-scaffold_91-1491911889:113147..113485TCONS_00073424-exon-scaffold_91-1491911889:113147..113485Clytia hemisphaericaexon
TCONS_00073424-exon-scaffold_91-1510915933:113147..113485TCONS_00073424-exon-scaffold_91-1510915933:113147..113485Clytia hemisphaericaexon
TCONS_00073424-exon-scaffold_91-1575043694:113147..113485TCONS_00073424-exon-scaffold_91-1575043694:113147..113485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:113147..113485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.424988 1.0645 0 1.09766 2.06812 2.03573 0.804841 2.78208 0.689911 0.333751 0 0.598994 0.744631 1.13093 2.70719 0.414592 1.28445 0.91683 2.20255 1.27517 1.36132 1.54304 0.357595 1.25218 0.586009 1.046 1.74184 1.19808 0.424458 2.06281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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