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TCONS_00073421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073421
Unique NameTCONS_00073421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=transcript|length=1560bp
cttatttgaaaAGAAAGGCTTGAATGTGTCCCAGAAGCCTTTAGGAGATT
GTTTTGGATCACTTTTACTGAAGAGAGATTTCTTGGCTTTCCTATTCATA
TTGACGACAAAATTTCTCTGACGCTTATAACGAGCAACATCTTCAGGATT
TTTGGTATCATTTGCTatgttttttagttttgatcGGAGCATAATGGCTT
TCCTGAGTTCTTTGGTTACATGCTGCTTATTATTAGCGCGGATTAACCTT
GTCTTTTTGATGGTGCATGCTCNGATTTTTGGTATTATTTGCTatgtttt
ttagttttgatcGGAGCATAATGGCTTTCCTGAGTTCTTTGGTTACATGC
TGCTTATTATTAGCGCGGATTAACCTTGTCTTTTTGATGGTGCATGctca
tttacaaaaattttctcaaataagcTATAATCTACAATATTTCTATCTTT
AAGTTGACAATTTAGTTCGTTTAAAAATATAAcagaattgaaatttttat
aatCCCTAAACTTCCTTCGTACAGGGGGTAATTTTACATAAAGTAGATTT
CATCATAGTATGGATAAGAAGGTGATAGTCACTTGAGCCCGTTTCTAAGG
CACCTGTAAATCAAAAGGAATGCTTCCTGTTTGTTAAAATTAAGTCAATG
CAGGTGCCATTATCTgacttaaaacaggttttttgttTGATCAGATTGTA
GACATCATTAGCattcatgaaattttttagTAATTCGTTATCAGGTTCCA
AGTTAAAATCACCTACCACCATAAAATTATTATAAGATCTACTATAAAAA
TCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTT
TGTAACCTGGAAGAATAAGACGGCTGGTTGTAAAAGCGTCATCAAGCTTA
GTTTCAGAGATAGCTAAAACATCtatattattttccaaaaaagtatcAAG
GCCTTTCAACTTATGGCGTACtgaatttatatttatatatccTATTGTGA
GATTTAAAgggtatttcaatttttgatttcggAGATTTGTAATGGGCGAA
CAATCAGTATCTTTGAGAATGACAAATTCATTTGGTGTACTATCCAATCA
CATCTTTCCAAGAAaagatttaagatttaaaatttaatgCCAATCTTTTC
AATCCCTTTGGATTCATGTGAAGTTTTCTTTTTGCTAAACATGAGTTATC
TACATTACCATGCTCAACCAATCCAATGTTTCTATCACTACAAAACTTCC
GCagctcttcatttttcaactttactttactAAAACTTCCTTGAAAGTCA
TTTCGCAAACACAGctcagaaaaataaatttgggtTTCAGNCAATCCAAT
GTTTCTATCACTGCAAAACTTCCGCagctcttcatttttcaactttactt
tactAAAACTTCCTTGAAAGTCATTTCGCAAACACAGctcagaaaaataa
atttgggtTTCAGGACTTATTTCTTTAACAGTTTTGAAGAGAAGATCGAG
ATTTTCGGTTGAATTAGCGATTGATTTAGTAAGGTCGTTTGTCCCCACGT
GAATGATCAA
Run BLAST on NCBI

protein sequence of TCONS_00073421-protein

>TCONS_00073421-protein ID=TCONS_00073421-protein|Name=TCONS_00073421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LIIHVGTNDLTKSIANSTENLDLLFKTVKEISPETQIYFSELCLRNDFQG
SFSKVKLKNEELRKFCSDRNIGLXETQIYFSELCLRNDFQGSFSKVKLKN
EELRKFCSDRNIGLVEHGNVDNSCLAKRKLHMNPKGLKRLALNFKS
Run BLAST on NCBI

transcript from alignment at scaffold_91:73626..75185

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_91:73626..75185 (Clytia hemisphaerica)
TTGATCATTCACGTGGGGACAAACGACCTTACTAAATCAATCGCTAATTC AACCGAAAATCTCGATCTTCTCTTCAAAACTGTTAAAGAAATAAGTCCTG AAacccaaatttatttttctgagCTGTGTTTGCGAAATGACTTTCAAGGA AGTTTTagtaaagtaaagttgaaaaatgaagagctGCGGAAGTTTTGCAG TGATAGAAACATTGGATTGNCTGAAacccaaatttatttttctgagCTGT GTTTGCGAAATGACTTTCAAGGAAGTTTTagtaaagtaaagttgaaaaat gaagagctGCGGAAGTTTTGTAGTGATAGAAACATTGGATTGGTTGAGCA TGGTAATGTAGATAACTCATGTTTAGCAAAAAGAAAACTTCACATGAATC CAAAGGGATTGAAAAGATTGGcattaaattttaaatcttaaatcttTTCT TGGAAAGATGTGATTGGATAGTACACCAAATGAATTTGTCATTCTCAAAG ATACTGATTGTTCGCCCATTACAAATCTccgaaatcaaaaattgaaatac ccTTTAAATCTCACAATAggatatataaatataaattcaGTACGCCATAA GTTGAAAGGCCTTgatacttttttggaaaataatataGATGTTTTAGCTA TCTCTGAAACTAAGCTTGATGACGCTTTTACAACCAGCCGTCTTATTCTT CCAGGTTACAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTTAGATTTTTATAGTAGATCTTATAATAATTTTATGGTGGTAGGT GATTTTAACTTGGAACCTGATAACGAATTActaaaaaatttcatgaatGC TAATGATGTCTACAATCTGATCAaacaaaaaacctgttttaagtcAGATA ATGGCACCTGCATTGACTTAATTTTAACAAACAGGAAGCATTCCTTTTGA TTTACAGGTGCCTTAGAAACGGGCTCAAGTGACTATCACCTTCTTATCCA TACTATGATGAAATCTACTTTATGTAAAATTACCCCCTGTACGAAGGAAG TTTAGGGattataaaaatttcaattctgTTATATTTTTAAACGAACTAAA TTGTCAACTTAAAGATAGAAATATTGTAGATTATAgcttatttgagaaaa tttttgtaaatgagCATGCACCATCAAAAAGACAAGGTTAATCCGCGCTA ATAATAAGCAGCATGTAACCAAAGAACTCAGGAAAGCCATTATGCTCCga tcaaaactaaaaaacatAGCAAATAATACCAAAAATCNGAGCATGCACCA TCAAAAAGACAAGGTTAATCCGCGCTAATAATAAGCAGCATGTAACCAAA GAACTCAGGAAAGCCATTATGCTCCgatcaaaactaaaaaacatAGCAAA TGATACCAAAAATCCTGAAGATGTTGCTCGTTATAAGCGTCAGAGAAATT TTGTCGTCAATATGAATAGGAAAGCCAAGAAATCTCTCTTCAGTAAAAGT GATCCAAAACAATCTCCTAAAGGCTTCTGGGACACATTCAAGCCTTTCTt ttcaaataag

Coding sequence (CDS) from alignment at scaffold_91:73626..75185

>TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_91:73626..75185 (Clytia hemisphaerica)
TTGATCATTCACGTGGGGACAAACGACCTTACTAAATCAATCGCTAATTC
AACCGAAAATCTCGATCTTCTCTTCAAAACTGTTAAAGAAATAAGTCCTG
AAacccaaatttatttttctgagCTGTGTTTGCGAAATGACTTTCAAGGA
AGTTTTagtaaagtaaagttgaaaaatgaagagctGCGGAAGTTTTGCAG
TGATAGAAACATTGGATTGNCTGAAacccaaatttatttttctgagCTGT
GTTTGCGAAATGACTTTCAAGGAAGTTTTagtaaagtaaagttgaaaaat
gaagagctGCGGAAGTTTTGTAGTGATAGAAACATTGGATTGGTTGAGCA
TGGTAATGTAGATAACTCATGTTTAGCAAAAAGAAAACTTCACATGAATC
CAAAGGGATTGAAAAGATTGGcattaaattttaaatcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045565XLOC_045565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073421-exon-scaffold_91-1491911889:73626..75185TCONS_00073421-exon-scaffold_91-1491911889:73626..75185Clytia hemisphaericaexon
TCONS_00073421-exon-scaffold_91-1510915933:73626..75185TCONS_00073421-exon-scaffold_91-1510915933:73626..75185Clytia hemisphaericaexon
TCONS_00073421-exon-scaffold_91-1575043694:73626..75185TCONS_00073421-exon-scaffold_91-1575043694:73626..75185Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073421-proteinTCONS_00073421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:73626..75185 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157562 0.025608 0.237867 0.203626 2.41976 1.84696 2.56091 3.08466 1.67887 1.44203 1.76573 2.17725 0.529438 0.906876 0.506991 0.452841 0.20548 0.444527 0.558307 0.700302 1.10409 0.668755 0.617234 0.82122 0.338335 0.704564 0.778436 0.520722 0.42533 0.464297
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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