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TCONS_00073406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073406
Unique NameTCONS_00073406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073406 ID=TCONS_00073406|Name=TCONS_00073406|organism=Clytia hemisphaerica|type=transcript|length=1303bp
aaggtaTCGGCGTGGATGATGTCTTTGTCATTATTCAAAATTGGGACAAC
ATTGGTGGCCCTAAAAATCGTGACCGCTCGATCGCCGAAAATGTTTCTCT
CGCATTGAGAACTGCTGGCGTATCCATCCTGGTCACGTCAATCACGGACG
TTTGCGCTTTCTTGATCGGAGCAACTACAATCCTTCCCGCCTTACGATCG
TTCTGTATTTTCGCTGGCATTGGTGTTTTAGCCGTCTTCATTTTAACATG
TACATTTTATGTGGCTTGGTTGGCTTTGGATAGCAGGAGACAACGTGACC
ACCGTGACGCGTGTTGTTGTTGTGCGTCTTTACCGACGGATTGGCAACCG
TTGGAATGTTCAAAGAGAATGTACCTTCAAGAGTTCATGAGAGGAACTTA
TTCAAAAGCAATTCTCTCTACGCCTGGTCGGATTGTTTTGATGTTGGTAT
GGGCTGGTTTATTAGCGGGAGGTGCATACGGTCTTTCACAATTGAAACAA
GATTTCGATCCTGAATGGTTTTTACCGGAAGATTCGAACGCCAGGATTTA
CAGCTCCGTGGATGATAAGTATTTCTCGAATGATGGTATCCAAGCCTATG
CGTACATTGAAGATGTTGactattttgcagaccaggaCAAGTTAGTGAGC
ATGTATAACACACTGGAGAATAACCAGTACACTGTTAAGGGAGAAACTCA
GAGTTGGTATCAAACCTATATCGCATGGATGGCAGCCAATCACGCCGCTG
ATTTGACCAACGGTAAACCAAGTACGAAAGATATATTTTACAATCGATTA
GATGAGTTTACGAAAACACAAGTTGGGAAAGTTTTCGAGAAGGAGATCAA
AGGAAACATAACGGAACAAAAGATTGAGGCTTCTCGTATCAAATACAAAC
ATATCAAATTGGAAGGCGCTTCGGTTGAAGTCAAGGCAATGGACAGTGTG
CAAGATGAGCTTGCCAAAATCACATTCACTAATGACTTCAGTCCTTTCGG
TTACACAAGGTTCTACGTTGGCTGGGAAACAAATAAGGTCATTTCTGAAG
AATTGATACGTAATTTGTTGTTGGCTGGTGTTATTGTGTTCTTGGTGACA
TTGTTCTTGATCGCCAACGTCTGGGTCTCCTTACTCGTCCTCACATGTGT
TGTCTTCACTCTGATCAACATTGCGGGTTACATGCATTTCTGGGGATTGA
CGGTTGATACGGTGACCACTATCCAGTTGATTCTGGCTATCGGTCTGTCA
GTCGATTATTCCGCTCATATCGGGCATGGTTTCATGGCTGCACGCGAAGG
AAA
Run BLAST on NCBI

transcript from alignment at scaffold_91:326960..339604-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073406 ID=TCONS_00073406|Name=TCONS_00073406|organism=Clytia hemisphaerica|type=transcript|length=12645bp|location=Sequence derived from alignment at scaffold_91:326960..339604- (Clytia hemisphaerica)
AAGGTATCGGCGTGGATGATGTCTTTGTCATTATTCAAAATTGGGACAAC ATTGGTGGCCCTAAAAATCGTGACCGCTCGATCGCCGAAAATGTTTCTCT CGCATTGAGAACTGCTGTAAGAACATTACAATTACATGTTAATTTTTTCC TACATTAACAACATTAACAATTTCCAATTAACACACACTCGCTCGAAAAG GAGGAAACTTCTAATTAGCGGACAGTTTCATTTTCTCCGGCCGTTTGAGT CGAGTCGATATTTTACGTGGATAACCCAGTAATCTAGGACTTTTCGACAG TCTTTCGATTGTTTCGATTTCGATTCACGGGGTCCACGGCCAACCGGCTC GGCTATCTATGAACTGAACAGGACATTGAAAGGAGCGGGGATTCGAACCG TGAATCCCTGGTTTGAGACGCTGATGCCTTTGACCACTTGGCCATCGTTC CTTTCCTAGAAATACTTATAAAACAGTTGGCGGTCACTGACCTGTTTGCA CGCCATGTGTCCATTAATTAGAAGTGTCACTCTATTCTTAAGAAAGGGGA CCCCGCAAGAAAGGGCTCGAAGAACAGACTTTTTTTCAAATGGAATTTGC AGATTTGACAAGATCTTGATACTTAGATCTATAGCTACACACAAGGTTTT GCTATCAATTAAAACATTTTCTATTCCCTTAAGCGTCTTAGCTTTAAACC TTTAAAAACTTAAGTCAAATTACACAAAAAGCGTTATTATTGCAAATGGA AACATTAATCTAATAATTTAATTAACGACTACCTATTTTAGGGCGTATCC ATCCTGGTCACGTCAATCACGGACGTTTGCGCTTTCTTGATCGGAGCAAC TACAATCCTTCCCGCCTTACGATCGTTCTGTATTTTCGCTGGCATTGGTG TTTTAGCCGTCTTCATTTTAACATGTACATTTTATGTGGCTTGGTTGGCT TTGGATAGCAGGAGGTAAGGTTTCCTTAAAGGGACATAAAAGTACTGACG AAATTTGTAAACAAACCGTATGCAGCGAGATACAAAATCAAAACAAATAT CACATGTCAAAATAAAAATAAAAACAAATGTTACATGTCAAAATAAAAAA TAAAGACAAATATGGCTGATTTTGATTGTTTCTTGAAATTATTGTTTTAC AAGTTTGTTTTGAACACGTGATTTTAATTGTTCTCTTTTAATGACACATG GTTCGCGCAATGCTTACATTTTACTACTCAGTGACTTGGACAAAATCCAA TTTATTTCTTTAAACCTACCAAACCTGATAAGGTAATGAGATAGGAACTA AATTATCCAGATGAGATGGAGTTTTTATAAGATACTTTAATAATTAGTCA TTTGAAGTAATAGAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTT TTATTACTGGTTAGCGACCAACCAAATCAAATAAGAGCTTGTAAAAACTT CATCTCGTCCGAATTACCTTCTCAACCTAAATTTTTTTTCTTTATCGAAA CATAAAAGACTGGGTCCTTCTCTCCGCGGCATTTGATAACCATCCAATCT TTACAGCTCAAAATACTCCTAAAATGGTGCAAGTTTCATGTTTTCATGTT TCAAATTTGAATAAGTATAAGCTTGTTCGCTTTATATTTGTAACCACTCC CCACTAAACCTTGATACATTTTCGCCCAGCTAATTCTTTTGACCAATCAA AATTGTTCTTTTAGACAACGTGACCACCGTGACGCGTGTTGTTGTTGTGC GTCTTTACCGACGGATTGGCAACCGTTGGAATGTTCAAAGAGAATGTACC TTCAAGAGTTCATGAGAGGAACTTATTCAAAAGCAATTCTCTCTACGCCT GGTCGGGTAAGCTAATTTTCTATTTCTATTCGGTTGAGTTGATGAGGATG CTCTGAGGCAACTGTTGATGCTTTCAAGAGTGTATCTCACGTTCGCTTCG TAGTACACTCTATTCGCATTGTCTGTACAGAAACCTCTGCGATGAGGCTT GATTTATACTTAGCAACTCTTATCTCGTCGTCTCCCCTCTCTCACCAACA CTCCATCGCAGCGGTCGGTTTGAAAAATCTTAAATGAGAAAAGACAATGA CAACAGACCCTCTACAGCATTGAATTTTGAAATAAGCCGTAGATACTGGG TTTGTGTACAGACAATGAGCGCCCAATCAGCACCTTATACTGACAACCCG ATTCCCCCGCCCCATGCCACGCCTGAGTGAAGGTTATAAAGTGAAGCGCT GCTAGTGGGAATCGAACCATAGTCGCTTGTACAGCAACCAAGGTTAATAA CTACCGTGGCTTGTTAGTGCCATGTGTAAGCTACTTATACTTATAGGTTC TTGCTAAGTCGACTTAATAGGGCTAAGTTGTAAGTCAACTTATAAGTGCT AAGTCGACATAGAACCTCTAAGTATAAGTAGTTTACACATGGCACTAACA AGCCACGGTAAATAACCGCTTTGCCACAGCGCCTGTATACCATTTACGCT CTTCCATAGTACAGTTACCGTCTTCGAAAGAATTATATGGGTGTAGACAC TCTTGGTGCTTTTGAAGTTGTACCCCTTAGGCGTACAAACTTTCGCGAGC AGAATTTTTTGCGAGCTCGAAAAATCGCGAAATTTACAATATTTGCTTTC GCGAATTTGAGGAAAAAATGTTTTTCGCGAATAAACTTTCATATTTAGAA GTTTTTTTACAAAATTTGGAGGATGTACCGTGTTTCAATCCCGACTTATG GAAGATTTTGAAAATCGTTAAAAATTCATTTTCGGTATTAACCACCTGTC ACTCTTTTGTCAATAACTTTTTTTGCCCAAGGTGTAAAAATTGACTCTAC CTCACATCCGAAAGCTGATAAAATTATCTTTCCAACGGTGTATAGAAACC TTCTATTCGTTTTTTTTCTAGGTTGACTCTATTTTCGACAAAGTTCTACA GGACTAGAATCGTTGGTTAGAATGAGAATTTTCGAATGAAAAAGTGAAAA ACATTCCTTAAATCCGATAAAGACGGTTGCTCTTCGACTTTAAAAAGGGA TTTTAGGATAAGAAAATGCTAAAATTTTGATATTTATTACGATTTCGAGG TTTTATAGAAACTTTCGCGAATTGCCCTGTTAAGAATTTTCAAAGACATT TACTCTCGCGAAAAAGGCCAAAATTCGCGTAAAGTTTGTACGCCTAAAGT GCTGTTTCAATCAGTTTTAAGGTTTCTTGCCAATGTGAGACTTTTCTTGA CTCATGTGTTGGTTTTTTAAGCAATGAAATTAGTTGACAGCTTTATATCC AACTTTCATTTTCAAATCGTATTAGTATACTGTTTTCAGGCTTATTCGCG AAATTAAATCCACGCGAAAATTTTCAAACCCTGACTCTCGAAATAAACTC CAGAAATACATGTCTGAGTTTCTGAACCCTCTTTTCCTTTCTGTTTAAGA TTGTTTTGATGTTGGTATGGGCTGGTTTATTAGCGGGAGGTGCATACGGT CTTTCACAATTGAAACAAGATTTCGATCCTGAATGGTTTTTACCGGAAGA TTCGAACGCCAGGATTTACAGCTCCGTGGATGATAAGGTAAATGATAACC CTGGGTTAGTATCTGGTGCATATATTTCTTATACTAGATGGAGCTTCTTC TTTTATCTCTCTGGGTCAGGTTTCAGAGGTATCGGCCACTTTTTAATGTA CTTTTTATGCACAGTAACTTCGTGTCATGCCGACATACCTTGTCTAATTC CGTCATAGCAACTATCTGGTCTTTAAAAATGTTTATAAATAAAACATTTT AAGTAAGCTGTTAAAAAATTCACTTTAATTACTTTGCAGACCAGATAGTT GCTATGACGGAATTAGACAAGGTATGTCGACGTTAGACGAAGTGACGGTA CTTTTTATGTAGTGATTTGCTGGTCAACCTGAAATGGGCAGTTCCAGAAA AACCATTACCCCCCCCCCCCTGTGGACGACAGGGTTTTTTTGGATTCTTT TTCACTTGGAAATCCTGAGAAATTTTGAAAAAGGTTACGGAAAAGGCACG ATTTTCCTGATTATTTGGTCATCCGTATCGGAAAATCCTTAAAATTTGCT CTATTTTCTTGTTAAGTATCGGAAAATCCAAGATTTAGAATTCCTTAAAA ATTCTTTAAAAATTCTTGAATAGCATAAGTGAATTGTTACGGAAAATCCA TGTCGTCCACATGGGGTAACGAACTATAACTGGAACCGCCCAATCAATTC CAATAACGTTTCGTTTAATAGTATTTCTCGAATGATGGTATCCAAGCCTA TGCGTACATTGAAGATGTTGACTATTTTGCAGACCAGGACAAGTTAGTGA GCATGTATAACACACTGGAGAATAACCAGTACACTGTTAAGGGAGAAACT CAGAGTTGGTATCAAACCTATATCGCATGGATGGCAGCCAATCACGCCGC TGATTTGACCAACGGTTTGTTGTTGTACTTTTTGTTTTTCATTTGTGAGA TTTTACTTAGGTGAGACTAATTTAATTTGTTGTTTTACGGGACAAGTAGC AAGCACATCATCAAAAACCGAGATTATTCATCCCGTTTCTACACTGTAAC GTCTGTTCCACTTTGCGACTTTTTCGAATGTTTTGAGCCCAGGTTTTCGG GCTCTAAACATTCGATTTTTTGACGTCACTTTAAACGTTTGAAGCTCTTG TAGTATCAAAAAATCGAATTTGCGTCAAAACACTTGAAAGGCTTCTTTTT TTTCGAAAATCGTGAAAGTGGAACTCACTAACACTAAGAAACGGGATGAA AAATCCCGGTTTTTGGTGAGGTGCTCTCTATAGTGAGTTCCACTTTGACG ATTTTTCTCAAAACATACGAAAAAGTCGCAAAGTGGAATAGACGTTAATT GTGTAGAAAAAGCGCGGGTGACGTCTAGTATAGTCTACGGGACAAGCTAC CCAAAAAAGAGGGTCGGTCGGTCGGTCGGTCTGTCGGTCGGTCGGTCGGT CGGTGAAAAAATAAGAATAAAATATACTTCCACTTTTAAATGAGAGTAAC GCATCAATACCAACATCACATTTATTATGATGTCCTTTATCAAAATCTTG ATTTATTTCTTTGTCTAGGTAAACCAAGTACGAAAGATATATTTTACAAT CGATTAGATGAGTTTACGAAAACACAAGTTGGGAAAGTTTTCGAGAAGGA GATCAAAGGAAACATAACGGAACAAAAGATTGAGGTTTGTATGATTACAC GTTTTTTTATAAGGTACTTTAGCCCGGCTCCGAGCCTGGAGCTCCTCATT AGCGACATTATGTATCAAAGATATTCTGCGGCTATGGTTGCGGGGCTGCC CATGCGGGTCGTCACCAAAGGCGACATGTTGTTGTCTATTTTGCTCTGTA CGGGAACAACACCAAAAAACCGTATAAGCAATAAGTCGACATAATGCCGT ACGTCAAATATCGAACTTGCTTTCACCCGCCATTACTTGCCTCGCCGCTT TAACTGTAGCCGTAGAGAATTCCAGATACATAATCTCTTTATTTTTCCAG AGGGTTTAGCCTTAAAGTTCCCTATCGAGTTCCTTATTTACTTAGCTACT TAGTTTAGACTGATATGATGCTTTGTTTAACAATGTTATACTACAATACA TAAAAAAGACGTTTATTGAACGTTGTTTCGTCAATATTCTATAAATTTTT TTGTTTAGGTTGTTGTAAATGAGTGCAAGTCTAAATCGTACTGTTCCTTA ACTTGTCTTGTTATTCTCAGCCTGAATAATTCCTTAACAATTCCTTATTT TTTGGACCATTTCCAGCCTCAAGTTCCTTATAAACGTGTTCCTTAAAAAA AGATGTAGTGTCAAAAGCTAAAAATTGATCAAATCGATTAAGTAAAAAAG TCATTATAAGGGTAATTCTTATTGAACTACTTTCTTAACCAAAAAGGGGG GGTTTTATACTAACTGTTAACACCTTCTCTCCGGGCCCGGCGGGGTACTA CCCTTGCCGACCGACGGGGGTGCTCCGCTGAGGTTCGAAAAATGGTCCCT ACGTTGGACTCGTTTTTTCAAAAATTTTGCCCAAATTTGCGTAAAAAGTG ACCCTGAATGGGGCTGAAATTCCAAAATTATCTCAAATTTTTTACTTTTT CCCCAAATTTTCCAAAAAAGACACCCTACGAGGGACTGATTTTTCTATTT TGAAGTTTTTGCGACCCTAACCGGGACTCGTGGAGGTTAAAAAAGGTACC CTCACCAGCGGCGCATCCCCGTAACCCATTTTGCCCTAGTATCCCCCGGG ACACCTCTCTTGGCACCCATAACGTGGTTCGTTTGGTTTGGTTTCGTTTA CAGGCTTCTCGTATCAAATACAAACATATCAAATTGGAAGGCGCTTCGGT TGAAGTCAAGGCAATGGACAGTGTGCAAGATGAGCTTGCCAAAATCACAT TCACTAATGACTTCAGTCCTTTCGGTTACACAAGGTTCTACGTTGGCTGG GAAACAAATAAGGTATTGTCTTATTTGGTTATTAGGTAATCATCATCGAG TTTGAAAGCCCTGAAGGCTAAAACTCTTTGATGGGAAATTGGCTATTCGA GAAAAAAAATTGTACCCCCTAAGTTGAGAAGGTCTTTTTCGGAAAGATGA CCCCCTGGATTTTTTCAATTTTTCAGGACCCCCTGGATTTTTTTTCTCTC ATTCTTTTTACCACCACTTTTCGACCTCGTCTTACTGAACACCTTGGATT TTCTACCTCATTTTACTAACCACCCTGGATTTTTACACTCGAAAAACTAG ACCCCTTTGATTTTTAATTTTACCGACCACCCTAGACTATTTCTGGAATA GCCACTTATTTACCATATGAAACCTGTGACTCGCGTGGTTTTTGCACAAA CGCCAAATTAAAAGGAAAATCCATTCACAGATTTTGAACACTATATGTCA CTTCAAAATAAAAAGCGTTAGATTCAATCTCTCATTTTAAAAGCGGNAGG TAATTCTTATTGAACTACTTTCTTAACCAAAAAGGGGGGGGTTCTATACT AACTGTTAACACCTTCTCTCCGGGCCCGGCGGGGTACTACCCTTGCCGAC CGACGGGGGTGCTCCGCTGAGGTTCGAAAAATTTTGCCCAAATTTGCGTA AAAAGTGACCCTGAATGGGGCTGAAATTCCAAAATTTTATCAAATTTTTT ACTTTTCCCCCAAATTTTCCAAAAAGGACACCCTACGAGGGACTGATTTT TCTATTTTGAAGTTTTTGCGACCCTACCTGGGACTCGTGAAGGTTAAAAA AGGTACCCTCACCAGCGGCGCATCCCCGTAACCCATTTTGCCCTAGTATC CCCCGGGACACCTCTCTTGGCACTCCTTAACGTGGTTCGTTTGGTTTGGT TTCGTTTACAGGCTTCTCGTATCAAATACAAACATATCAAATTGGAAGGC GCTTCGGTTGAAGTCAAGGCAATGGACAGTGTGCAAGATGAGCTTGCCAA AATCACATTCACTAATGACTTCAGTCCTTTCGGTTACACAAGGTTCTACG TTGGCTGGGAAACAAATAAGGTATTGTCTTATTTGGTTATTAGGTAATCA TCATCGAGTTTGAAAGCCCTGAAGGCTAAAACTCTTTGATGGGAAATTGG CTATTCGAGAAAAAAAATTGTACCCCCTAAGTTGAGAAGGTCTTTTTCGG AAAGATGACCCCCTGGATTTTTTCAATTTTTCAGGACCCCCTGGATTTTT TTTCTCTCATTCTTTTTACCACCACTTTTCGACCTCGTCTTACTGAACAC CTTGGATTTTCTACCTCATTTTACTAACCACCCTGGATTTTTACACTCGA AAAACTAGACCCCCTTGATTTTTAATTTTACCGACCACCCTAGACTATTT CTGGAATAGCCACTTATTTACCATATGAAACCTGTGACTCGTGTGGTTTT TGCACAAACGCAAAATTAAAAGGAAAATCCATTCACAGATTTTGAACACT ATATGTCACTTCAAAATAAAAAGCGTTAGATTCAATCTCTCATTTTAAAA GCGGCGCAAATCTTATTAAGGCTTTAAACCCAATGATCGTCTTATAAAAA TGTTTTAAAACCTTGCCTTTTATTTTGCCTCAAACAAAGAAATAAACTTG CAAAAGTATACTTTAAGGAAAGAAATTTTAGCGGGAATTTAATCTGGCGT GTAGTCGAAAAAGTTTTTTCAGAGGGAATTTAATTTTGACGGATGGTGGG AAAAGTTAAAATATCGGCGTTAACTTAATTTGGCGGAATTTGGCCAAATT TCACTTTCTTTCCACCAAAATTTCTTCCCTTAAGGTGAATAATAGTGCAA TCTGGATGTGCCAAAAAGTCATTAAAACATTGTGCACAAAGGTGAATGGT CCTGGAGTTTTTGCTGACGTCAACAATTACGTCATTTTTCAAAAAGCNTT GAAAGCCCTGAAGGCTAAAACTCTTTGATGGGAAATTGGCTATTCGAGAA AAAAAATTGTACCCCCTAAGTTGAGAAGGTCTTTTTCGGAAAGATGACCC CCTGGATTTTTTCAATTTTTCAGGACCCCCTGGATTTTTTTTCTCTCATT CTTTTTACCACCACTTTTCGACCTCGTCTTACTGAACACCTTGGATTTTC TACCTCATTTTACTAACCACCCTGGATTTTTACACTCGAAAAACTAGACC CCTTTGATTTTTAATTTTACCGACCACCCTAGACTATTTCTGGAATAGCC ACTTATTTACCATATGAAACCTGTGACTCGCGTGGTTTTTGCACAAACGC CAAATTAAAAGGAAAATCCATTCACAGATTTTGAACACTATATGTCACTT CAAAATAAAAAGCGTTAGATTCAATCTCTCATTTTAAAAGCGGCGCAAAT CTTATTAAGGCTTTAAACCCAATGATCTTCGTATAAAAATGTTTTGAAAC CTTGCCTTTTATTTTGCCTCAAACAAAGAAATAAACTTGCAAAAGTATAC TTTAAGGAAAGAAATTTTAGCGGGAATTTAATCTGGCGTGTAGTCGAAAA AGTTTTTTCAGAGGGAATTTAATTTTGACGGATGGTGGGGAAAATTAAAA TATCGGCGGGAACTTAATTTGGCGGAATTTGGCCAAATTTCACTTTCTTT CCACCAAAATTTCTTCCCTTAAGGTGAATAAAAGTGCAATCTGAATGTGC CAAAAAGTCATTAAAACATTGTGCACAAAGGTGAATGGTCCTGGAGTTTT TGCTGACGTCAACAATTACGTCATTTTTCAAAAAGCCTTCCGCAATAACT TTTATTGGCTTCATTTTCTGATGTAGGTAATGTATTTCTAAACGAGCATG AAAAACGCTTTCCAACGGTGTGTAAAATGACATACTTTGGAGAAAAAAAT CATTTTAGCCTGGGAACCTGTTCTGGTCTGTAAAATACACAAACAGGTGC CAATTTTTCGGGTCTGAGATTTAAATCCATTTTTGACCCCTAAATTACAA TTGTACAAAATCTCATGCTTGTACGCCTTTGTGCACAATTTTTACACAAC TAGACCGTACTAAATTTTTTTCTTCTTTGACAGGTCATTTCTGAAGAATT GATACGTAATTTGTTGTTGGCTGGTGTTATTGTGTTCTTGGTGACATTGT TCTTGATCGCCAACGTCTGGGTCTCCTTACTCGTCCTCACATGTGTTGTC TTCACTCTGGTAAGCAGAAAAAAAATTTACCCCTACTGTTTTGGATATTG ACTTTTCGAAGTATCGAACCCCCTGGCAGTCTGTGCCACTAACTCGATCG GGAAGATTTTTCCGAAATGGGAGGTTGAAAATTGACTGAATCTTCGGCGA AGCTTACGATGACCTGCTAAAGTTGAAACTTTTTGGAGGTGAAAAAGCAT CAAATTTTAAGATTTTGCACTGAAAGAGAAATAAACTTTACCGTAGAAAT CTTGTTAAATTGTGAAAAAACTGCGTAGGCTACCCGAACGGGAAGTTCCA ACCCGATCGAGTTTTCCTTATTTTCTCGCTTCTTCCCGATCTGGAAGTCC GTTTTTTAACTCTTACCCATTCATTACCCGTTGGGTGTCAAGTTAATTTC CTGTTCGGGAAGGCTCTTCCCATTTCGGAAGAATCTTCCCGATCTAGTTA GTGGCACAGACTGCCTGGATATCCACTTTTAAAAATATGCTCAACTCCTT TGGATATCCTCTCTTATAAAGATGCTTACCTCTGGATATCGTACTTTTTA CTTGAAAAGACACTTTACCCCCTGGATATCCGCTCCCTTGTAGATATTTG AAATTTAAGATATTTGAACAAAAATCGTTAAACCCCTTTGATATCCGATA TCTTCAAAAGGAGGGGACGGACTTTTTCTGGAAAAGCTCATTATGGCGTA ACATAAAAGTTGGTTAATTTTCGCGTGGGCGTTTTTCTTGAATTGAGAAT CTAAAATTTTCGCATTGACGAAATTTGGCGAATCGGCCTCTTTTTCACAC TACAGTATATGGCCCCCAAAACGGAGACGGCCCCCAAAACGGAGGTTTTC ATTAATATGAAGATTCTGACTTGTAGATTTATCAGAATTAAACAATTGTT GTTTATTTTGAAAGAATGATGGTTATACTTAAAAATGAGCATGTTTTTGA TGGTTTGATACAGATTCAAAATAACATATTTGCGTCTAAAGGAAATATTT TAACACCATAATTAGATAAAAATTGGATATAACTCACTCTAGCTCCTTGG ATATTGAAAATAAGTTATGAAAACGGGGTATAGAAAACTTTCTACACCTA ATGCCGTTCAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATCTTAAAGATAT CTCGAGAAATCGCTAAAATTGCAAACCTCCGTTTTGGGGGCCATTAGAAA AAAGCTACCTATCTTTAAGCGATTGAAAAAATTGTTGAAATTGAAAATTT TGAAAAAGAACTTCCAGGAAATAAAGTAGAGATGTTAAAGGGGTTCGTTC ATGCAGCAAAAATTTTTGTAAAAATCTCTTTTCCTCTAGATTTGAGAGAA ATTTCAAATTTGATCGCCGTTTTGGGGGCCACATACTGTATATCTTTCAT TTTCCTAGGGGTTTTTGGCCAAAATTCGGATTTTAAAATTATTTCGCGAG GACTAATGTTTGCGAAAACCGCGAAGATTGATCAACGGGAAATTTGATTC AGTCAATTTTTTTAAAGAGGGTTTTGGTAAAGTCTTGTATTTTAACAGTT TCCTTATATTGTGATCAATACTATGTGCTAGACCTTCGGTGAAATTGTTT TTGTGCTTCTCTTGGTAGGCATGCTTGACTCAAGGTGCCTTTTTCTTTAT CGATGCCTTATCTTTCTGACATTCACAAGACCTTTTATTGTTTCAGCATA AAAAAGACGGAATTGAGGAAATTTTTTCAAATAAATGATACATCCCCTAG TGTTTTATACACCTTTTCGACGGTAGCCGCCAATTGCCGTGCGGGCATTT TTATCCCACTAAAACCGTCCCAGTCCTTTTTTTCGTACCTATAGACAATA AAAAAATGTGTCAAAAAAGAACTTGGACGGATAAAAATGCCCGCGCGGCA ATTGGCGGCTACGGTCGAAAAGGTGTATTGAATGATTGTTTCGAAATTCT TTTAGATCAACATTGCGGGTTACATGCATTTCTGGGGATTGACGGTTGAT ACGGTGACCACTATCCAGTTGATTCTGGCTATCGGTCTGTCAGTCGATTA TTCCGCTCATATCGGGCATGGTTTCATGGCTGCACGCGAAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045553XLOC_045553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073406-exon-scaffold_91-1575043694:339489..339604TCONS_00073406-exon-scaffold_91-1575043694:339489..339604Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:338641..338813TCONS_00073406-exon-scaffold_91-1575043694:338641..338813Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:337749..337890TCONS_00073406-exon-scaffold_91-1575043694:337749..337890Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:336018..336155TCONS_00073406-exon-scaffold_91-1575043694:336018..336155Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:335141..335333TCONS_00073406-exon-scaffold_91-1575043694:335141..335333Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:334371..334486TCONS_00073406-exon-scaffold_91-1575043694:334371..334486Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:333195..333251TCONS_00073406-exon-scaffold_91-1575043694:333195..333251Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:332035..332136TCONS_00073406-exon-scaffold_91-1575043694:332035..332136Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:329896..330021TCONS_00073406-exon-scaffold_91-1575043694:329896..330021Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1575043694:326960..327099TCONS_00073406-exon-scaffold_91-1575043694:326960..327099Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:339489..339604TCONS_00073406-exon-scaffold_91-1510915933:339489..339604Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:338641..338813TCONS_00073406-exon-scaffold_91-1510915933:338641..338813Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:337749..337890TCONS_00073406-exon-scaffold_91-1510915933:337749..337890Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:336018..336155TCONS_00073406-exon-scaffold_91-1510915933:336018..336155Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:335141..335333TCONS_00073406-exon-scaffold_91-1510915933:335141..335333Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:334371..334486TCONS_00073406-exon-scaffold_91-1510915933:334371..334486Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:333195..333251TCONS_00073406-exon-scaffold_91-1510915933:333195..333251Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:332035..332136TCONS_00073406-exon-scaffold_91-1510915933:332035..332136Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:329896..330021TCONS_00073406-exon-scaffold_91-1510915933:329896..330021Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1510915933:326960..327099TCONS_00073406-exon-scaffold_91-1510915933:326960..327099Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:339489..339604TCONS_00073406-exon-scaffold_91-1491911889:339489..339604Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:338641..338813TCONS_00073406-exon-scaffold_91-1491911889:338641..338813Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:337749..337890TCONS_00073406-exon-scaffold_91-1491911889:337749..337890Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:336018..336155TCONS_00073406-exon-scaffold_91-1491911889:336018..336155Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:335141..335333TCONS_00073406-exon-scaffold_91-1491911889:335141..335333Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:334371..334486TCONS_00073406-exon-scaffold_91-1491911889:334371..334486Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:333195..333251TCONS_00073406-exon-scaffold_91-1491911889:333195..333251Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:332035..332136TCONS_00073406-exon-scaffold_91-1491911889:332035..332136Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:329896..330021TCONS_00073406-exon-scaffold_91-1491911889:329896..330021Clytia hemisphaericaexon
TCONS_00073406-exon-scaffold_91-1491911889:326960..327099TCONS_00073406-exon-scaffold_91-1491911889:326960..327099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:326960..339604 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.43656 5.80501 5.35343 8.48717 13.5515 17.9199 4.91635 8.71728 9.27689 9.98833 15.9943 10.9146 16.0064 16.4454 4.42235 9.91351 25.8781 26.3061 18.2033 16.6103 69.5244 52.6257 12.9529 14.3922 48.9524 31.1929 12.7602 9.4818 2.14336 2.12791
Blast
BLAST of TCONS_00073406 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.536e-28
Identity = 106/489 (21.68%), Postives = 218/489 (44.58%), Query Frame = 3
Query:    3 GIGVDDVFVIIQNWDNIGGPKNRDRSIAENVSLALRTAGVSILVTSITDVCAFLIGATTILPALRSFCIFAGIGVLAVFILTCTFYVAWLALDSRRQRDHRDACCCCASLPTDWQPLECSKRMYLQEFMRGTYSKAILSTPGRIVLMLVWXXXXXXXXXXXSQLKQDFDPEWFLPEDSNARIYSSVDDKYFSNDGIQAYAYIEDVDYFA-------------DQDKLV-SMYNTLENNQYTVKG-ETQSWYQTYIAWMAANHAA----DLTN---------------------GKPSTKDIFYNR-----LDEFTKTQVGKVFEKEIKGNIT-----EQKIEASRIKYKHIKLEGASVEVKAMDSVQDELAKITFT-----NDFSPFGYTRFYVGWETNKVISEELIRNLLLAGVIVFLVTLFLIA-NVWVSLLVLTCVVFTLINIAGYMHFWGLTVDTVTTIQLILAIGLSVDYSAHIGHGFMAAREG 1301
             +GVD++F+++Q +      + +  ++ + +   L     S+ ++S ++  AF +GA +++PA+ +F +FAG+ V   F+L  T +V+ L LD +RQ  +R    CC     D   ++ S+   L  F + +YS  +L    R +++ ++ G+L+     L+++    D    +P+DS    Y     +Y        +   E  DY +             + D LV  ++N  + + YT  G    SW   Y  W+    +     ++T+                     GK   +   + R     L +    + GK         +        ++ A+     H  L+ ++  + A+   +   + +T T     + +  F Y+ FYV +E    I ++ I NL ++   +FLVT+ L+   +W ++++   +   L+N+ G M  WG++++ V+ + L+++ G+SV++ +HI   F  + +G
Sbjct:  696 AVGVDNIFILVQAYQR--DERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESC-LFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKG 1181          
The following BLAST results are available for this feature:
BLAST of TCONS_00073406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC11.536e-2821.68Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE... [more]
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