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TCONS_00073400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073400
Unique NameTCONS_00073400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073400 ID=TCONS_00073400|Name=TCONS_00073400|organism=Clytia hemisphaerica|type=transcript|length=928bp
AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG
TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT
TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT
GCATGGTAAGAccttattttgactttttattcgtttgattttcataaaaa
tggtcGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG
ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT
TCATCGTCTCGGAACTTATTAGGACCCCTtatcacttttttgaaaataca
tttaGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG
GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC
GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA
CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA
GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA
AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA
CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGGTAAGAACTa
aatcattttttgagtttcatTATTTCAGTAAAACTCCCTGATATTGAATA
TCTCAAATTTAAGAACCCAAGACCTCGAGAGGGAAAATATAAGCATATTG
TAAGAACATTACATAAGGCTTTGCTCTAAATTATCTGATTTCTTAGGGAA
TTGCTTCAAACCACTCGAAAATACTTAATTACTCTAGCAACGTTATTTGC
AAACGAGGGCTGTAATGcttttatgcat
Run BLAST on NCBI

transcript from alignment at scaffold_91:207599..208526-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073400 ID=TCONS_00073400|Name=TCONS_00073400|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at scaffold_91:207599..208526- (Clytia hemisphaerica)
AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT GCATGGTAAGACCTTATTTTGACTTTTTATTCGTTTGATTTTCATAAAAA TGGTCGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT TCATCGTCTCGGAACTTATTAGGACCCCTTATCACTTTTTTGAAAATACA TTTAGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGGTAAGAACTA AATCATTTTTTGAGTTTCATTATTTCAGTAAAACTCCCTGATATTGAATA TCTCAAATTTAAGAACCCAAGACCTCGAGAGGGAAAATATAAGCATATTG TAAGAACATTACATAAGGCTTTGCTCTAAATTATCTGATTTCTTAGGGAA TTGCTTCAAACCACTCGAAAATACTTAATTACTCTAGCAACGTTATTTGC AAACGAGGGCTGTAATGCTTTTATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045550XLOC_045550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073400-exon-scaffold_91-1575043694:207599..208526TCONS_00073400-exon-scaffold_91-1575043694:207599..208526Clytia hemisphaericaexon
TCONS_00073400-exon-scaffold_91-1510915933:207599..208526TCONS_00073400-exon-scaffold_91-1510915933:207599..208526Clytia hemisphaericaexon
TCONS_00073400-exon-scaffold_91-1491911889:207599..208526TCONS_00073400-exon-scaffold_91-1491911889:207599..208526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:207599..208526 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.304276 0.213017 0.372789 0.408523 0.522731 0 0 0.209618 0.342647 0.209415 0 0 0 0 0 0 0 0 0 0 0.000449945 0.950005 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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