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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073398 ID=TCONS_00073398|Name=TCONS_00073398|organism=Clytia hemisphaerica|type=transcript|length=1519bp AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT GCATGGTAAGAccttattttgactttttattcgtttgattttcataaaaa tggtcGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT TCATCGTCTCGGAACTTATTAGGACCCCTtatcacttttttgaaaataca tttaGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGCAAGTCTGAA GGCAATATTGTTCCACCATAACCTTCCAACACGTGGTACAAAGGACGAGA TTGTGCTCAACGTTTGCCTTCTTAAGGAGGATTCGAGAGCACTGTATCAG CAAAAACTACGTTTCTTCTCTCCTCGAGCTAATAAAAAAGACCAGCACTC TCATTTGTCGGCAGAGACATTCTTGTGCAGTCCGTTCCAGAAAGAGCCGA AAGTTTGCCACACCACAGGAACCAAGTATTTCGATCAAGAATCCTAGAAA AAGCGCCAGTGAGGTATCGACATATAACAAAAGCAGAATTGATGTCCCTT CTGGTATAGACGAGAGCAACATCGAAACGTTGTTCGAGCCCCTGAGGCAA GATCTTTTGGCCATCTCAAGATTTGAAGAGGGTGACAACGAGCAAAACGA CAACGGGAACAATGAAGGGGACACGGTGGAAACACACATGGAGAGGAATA CgtatgaaagtttttttgaagttggaGTGAGGGTTGAAGTTCTACGAATG AAAGAGGAAACGAAAACTGGGAAACGCGGGGGGTGGCTTGTGGTAGTTAT CCAAGACTTTGATCTCGAAAATGATTGGGTCAGAGTGGAATTTTTAAGTT ACGAAGAAAAGCTTTTCAAGCTCTACGTCAGTGAACTTCTTCGTGACGAT AAGTTGAGACTTAAAAGCgctttgttttaaagtttattgTCGTTTTTATG GTTCAGCTACGATGTTTTTACACGGGTGAAATTCGGGATAAAAAAGAGAA CCGCCATGTGCgttgaaaaattcactttttcctTACTAAAATTAACATTC AATTGTGACAGCAAAAtgt Run BLAST on NCBI transcript from alignment at scaffold_91:200583..208526- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073398 ID=TCONS_00073398|Name=TCONS_00073398|organism=Clytia hemisphaerica|type=transcript|length=7944bp|location=Sequence derived from alignment at scaffold_91:200583..208526- (Clytia hemisphaerica) AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG
TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT
TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT
GCATGGTAAGACCTTATTTTGACTTTTTATTCGTTTGATTTTCATAAAAA
TGGTCGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG
ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT
TCATCGTCTCGGAACTTATTAGGACCCCTTATCACTTTTTTGAAAATACA
TTTAGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG
GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC
GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA
CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA
GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA
AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA
CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGGTAAGAACTA
AATCATTTTTTGAGTTTCATTATTTCAGTAAAACTCCCTGATATTGAATA
TCTCAAATTTAAGAACCCAAGACCTCGAGAGGGAAAATATAAGCATATTG
TAAGAACATTACATAAGGCTTTGCTCTAAATTATCTGATTTCTTAGGGAA
TTGCTTCAAACCACTCGAAAATACTTAATTACTCTAGCAACGTTATTTGC
AAACGAGGGCTGTAATGCTTTTATGCATCTCGAGAAGAGTGAATTTGTTT
AAATAAACAAAAAGTATGTAGAATTTGGAATATACATCGAAAAATAGCTT
TGAGCATAAAGTTCAAAATACCTTTTGGTGTTCAGACTTTGGCGGGCAGA
GAGAGAGAGCTTTGATTTTTTTCTAAACTTTATGCCACACCTATTTCTCT
CTATTCGAAGCTTTCTACTGACTCACTAGACAGACCTCATTAATCTTGCA
CAAAGAGCAGAAAANGAAGCTTTCTACTCACTCAATAGACAGACCTCATT
AATCTTGCACAAAGAGCAGAAAAATCTCAATTACAAAGAAAAAATGTAGT
TTTGTTTATTTATTTTTTCTGGTGTTCTAATTTTCAGACCTATTGTTAAA
AAATCTGTCTGAAAAGACAGGAAAATATTTTTCTGTGCAGGGTTCGAATT
ATAGCTTCGCACTTCGCAAATTGCGAAGCAATTTCAGGTTTTGGCGAAGA
AAAAAGTTTTTTGAGATAAAAATTGCGAAGCAAAAATTTTTAAGCGAAAC
TTAAAAATTGAAATGCAAAGAGAAAAAAGAATCTAACACAGTCTGTATAT
GTAATTTAATGAGTGGGATCACACGCCTGAATAAACACTTTTTTAAAGTC
TTTCTATATTCACTTCATTATGTTTATCAAAAAAACATAATCTCTTTCTA
GTACATAAAAATTACTTTTGTTTGCTGAAAGCTTAGTTATAAATAAACCT
ATGAATGTTTTTGATAAACAATTAATAATACACTTATTGTATGCCCCAGA
CTTTCTTTTTTGGTAGCAGACATGATATATGATAGAAGATGAAATAATCT
TTTTCACATTCACACTTTTTAAATTAAACAGGTGTACCAGGAAGAAAATT
GTCACGCAATGTTCTAGTTGTTTCACAATCTTTATGATGTAATAATATTT
TTTCAATAGCTTTTTTGTTCGTTATGTATTATATTATATATTAGAACAGA
AAGAGAGCGGTCACACCAAATGATTTACCTCCGCTTATATAGCTGTTGTC
ATAACAACAAATATTTTTATCTATTTTTTGATGTGACCACTCGAAAAAAT
GGAAGAAAAAATCCTGAATTCGAGGAATCACCTGTTTTAATAAGCGAAAG
NTCTTATCGTAGTTTAAGAAGAATTCCTTTATGTTTAAATAAATAGGTCT
ATTGAAAATGGCGATTTGTGTTTACTTTTCAAATTTTGAAAATTTTAAAA
AGATGTGCACATATTTTTTTGCACACGCCATTACCATCCACACACAAGAG
AAAAACAGAGTTGTGTCGAGGCTTTTTATTTCGAATGAATGAATGAATGA
ATTTTTATCCACACAAATCTTTAGACTTATTAGAAATGTTGATTGAAGTT
TTCCGACGCGCCGCTTAAAATAAGCAAAAATGGTGATTCCTTTTTAGCAT
TAACTAAACTTATATTTTGGTGTGACCGCGCTCAAAGAGAGCAAAGATAA
CCTACAAATAGAATTGACGTCATAAATGAAAATTTGAATAAAGTAAATAG
CAAAAAGTTTTTTCATGTATTTCATTTGTTTTATTCAAAGCTATTGAAGC
TCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTAATTTCATTCTTC
GTTCATTTTCATACCAACATGGCTTCGTTAACAACTGTAAATAAGTGGCA
AAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTGTCGATGGAAAGG
TCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCTGACAAGATTAAA
GGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTACAGAATCTATAAA
GAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTCATAAACATGCAA
AGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCTTATAACAAGGAA
ATTGTTTCAAAAACACCGATTGGTAAAGGTTTAACAAAAATGCAAGAAGA
AGATGAAAAGGTAATAAGTTTTTGTCATAATTTTGATTAACTACATAATC
TGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAATGATTAAATCAT
GAAAATTTAGTTCCTTCTAAAAATTAATTACCCAGCTGGCACACAACGTT
GTTTCAACGTACATCTAACGTTCATAACGTCCATAAAACGTTATATGAAC
GTTAAAACGTTATATGAACGTTAAATCAGTTATATGAACGTTAAAACAAC
GTTTTGTGCCAGCTGGAGAGTTGCGTTTTATTTTAAAGCTCAAATGCTAA
TTTTCTAACATACTTAGACAAACCTTTTTCAGTCAGTAAACAAAACTTAT
AAATGTCTTAAGTTTTTAAATTGAAGAGGGGTGTCTAGAAAAAAGTTTTT
AATTGGTTTCACATGATTTTTGTATAGTTTTAAAGAGTAGTATTTCGAAT
AGAGAATGGAGTGAAAAAAATAGAATCCCCCCTGTATTTATAATTTCAGA
TCCTGCGCACCAGATTCAACACAGCATACTATCTATGCAAAAAGGAACGA
CCGTACAGTGACTTTTCAGATCTACTGAGTTTGGAGGAGAAGAACGGTAT
GAAAAAGAGTCACAGTTACAGGAATGACAGAGCTGCTGCTCAATTTATCG
ATACGGTTGGTAAGGAGATGAAAGATTCTTTTGTGAATGATCTTTTGAAT
GCCAACTACTATTCAGTATTAACCGATGGGAGTACCGATGCAAGCATCAC
AGAACAAGAGGTAGTATATGTTCTCTATCTATCTGGTGGTGAGCCAAAAG
TTAAGTTCTTAGGAATAGAGGCTCCGGATCAAGCAACTGCTGATGGATTG
AAAGAAAATATTGAAAAGGCTTTTCACAATATCGGGATAACTCCTATGTA
TGATTCCCTTGCCAATCTGTGTGTTGATGGAGCTTCTGTTAATACAGGCA
TCCATAATGGTCTTGGTGCTAAGATGCAAGTTCATGCACAATGGCTAACC
ATTATCCATTGTTTTAACCATAATCTGGAGCTAGCCGTTAGGCGAACCCG
AAAAAATTTTTTGTTTCCGGTCCACCGGCCGGGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATAACTCACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAA
ACGGGGTATAGGAAACTTTCTACACCTAATGCCGCTCAGAAAATGCAAAT
ACATCTGTTACTTTAGAGGCTGGGTAAAAGATATAGCATCTTGAAGGTCA
ACCAGTATTTTGGAGCCCAGAATCAGCATTGACAAAACCGAAAATTCTAA
ATATGAGAAAAAGAAAAAAGTCTTGGAATTCTATTCCTATCACCTTGAGT
TAGTAGTTTATAACAAAAAATTAACATTATATATAATNNCAAATTCTGTC
ATTTTTTTGCAAAATATAGGAGAAAAATATCTTTAAAGCTTAATATTTTC
AGTTTCAGTTATGCTTTTTTTCTAAAATTTTCACAACTTTTTCCATACAT
GAATGGAACTATTTTCAAAAGAGATTTGTTTTCAAAAACTTAATAAAGAC
GTTGTTAAATCAAAATTGTCATTTTGAAAATTTCTAAATTTTCAGTTTGG
ACTTTGCAATATCGAAAATCTTGAAATATTTCATAAAAATCATAAATTTT
ACATCCATCGGGTCGTAAATTTAAGGGAAAACACAAATATGCTCATAGTT
TTCCCCCCTATTACAACTGGGCTTAATAATTTGATTTTAACTATACCTCC
GTTTTGGGTGCCCCAAACCTGCATTTTGACAACCAGGGGTATACTGTAAA
AATTTTATCAAATAAGTTTATGCCCAAAACCCTCTAAATCATATTTCAAA
ACTATGGTCAAAATTTTGTATTCATATCTTAAAGATATCTCGAGAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATGTTGTAGATAGAACAATAGATCGTAAATAT
AGATCGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTGCTTCGC
AAACATCTAAAAATTTTCACCTGCGGCGCTATCCCGCTCGCTTCGCTCGC
ATTTTTTTAGCGAAGCTCCTCAAATTTATAATTCGAACCCTGCTGTGTAT
CTCGTGAAAGAGTGTATTTCCTTTTATCCTGACCTAATAATAGGCCGATC
AAAGAGCGAGAAAATGAATGAAATCTCTGTGAATAGCGGGAAACTTAAGA
GGGAAAGAGCAAATTTTCATAATTTAACCTTTTTCTTAAGTAATCCTTTT
TTCCTTTTTTCAAAAGGTATAGCAAGTCTGAAGGCAATATTGTTCCACCA
TAACCTTCCAACACGTGGTACAAAGGACGAGATTGTGCTCAACGTTTGCC
TTCTTAAGGAGGATTCGAGAGCACTGTATCAGCAAAAACTACGTTTCTTC
TCTCCTCGAGCTAATAAAAAAGACCAGCACTCTCATTTGTCGGCAGAGAC
ATTCTTGTGCAGTCCGTTCCAGAAAGAGCCGAAAGTTTGCCACACCACAG
GTAGGGACCGCAATAACTTTTTAAAATCTTTTTAGCTTCTCAAAAGCTGG
GCTATTCGAAAGAGTTTTAAAAAAGAGAAAAGACGAGGGGGCATTTGTTA
AAACAAGTTTCTTGGTTAAAATCGGTTAAGCTGTTTATAAGATGCTGCAT
TTCCCGGCTTAAAAATAAGCTTCATTGGATAGCTTTGGAGCATTTTTGGG
GAATTCATGGATAAATCAAGTCAAACGCACTTTTATAGCTTTGCATGATG
TAATTGTCTCCTTTATTGTGTAATAATTAAAACAGGTAAAACATCGTGTA
TTGATTTTAAATATGGGCTCCGCTACCCCTAAGCTCGCTTATAAAGTAGA
GTCGTCTGCCATTGTAATCCTTTGAAAAAAAATTTTTCAACGAAAAATAA
AATTTAGATCAGCAGAATTTTGTCAAGACAGTTATTTTATGATACGAATT
TCAGTCCATGATTTCGGGAGGTATAGATCACGAGATCCTGATTTTAGTGA
AACTCCGATCATTTACCCCTGTCTTTTGCTGTCTCTACCACAGGAACCAA
GTATTTCGATCAAGAATCCTAGAAAAAGCGCCAGTGAGGTATCGACATAT
AACAAAAGCAGAATTGATGTCCCTTCTGGTATAGACGAGAGCAACATCGA
AACGTTGTTCGAGCCCCTGAGGCAAGATCTTTTGGCCATCTCAAGATTTG
AAGAGGGTGACAACGAGCAAAACGACAACGGGAACAATGAAGGGGACACG
GTGGAAACACACATGGAGAGGAATACGTATGAAAGTTTTTTTGAAGTTGG
AGTGAGGGTTGAAGTTCTACGAATGAAAGAGGAAACGAAAACTGGGAAAC
GCGGGGGGTGGCTTGTGGTAGTTATCCAAGACTTTGATCTCGAAAATGAT
TGGGTCAGAGTGGAATTTTTAAGTTACGAAGAAAAGCTTTTCAAGCTCTA
CGTCAGTGAACTTCTTCGTGACGATAAGTTGAGACTTAAAAGCGCTTTGT
TTTAAAGTTTATTGTCGTTTTTATGGTTCAGCTACGATGTTTTTACACGG
GTGAAATTCGGGATAAAAAAGAGAACCGCCATGTGCGTTGAAAAATTCAC
TTTTTCCTTACTAAAATTAACATTCAATTGTGACAGCAAAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073398-exon-scaffold_91-1575043694:207837..208526 | TCONS_00073398-exon-scaffold_91-1575043694:207837..208526 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1575043694:201727..201954 | TCONS_00073398-exon-scaffold_91-1575043694:201727..201954 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1575043694:200583..201183 | TCONS_00073398-exon-scaffold_91-1575043694:200583..201183 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1510915933:207837..208526 | TCONS_00073398-exon-scaffold_91-1510915933:207837..208526 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1510915933:201727..201954 | TCONS_00073398-exon-scaffold_91-1510915933:201727..201954 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1510915933:200583..201183 | TCONS_00073398-exon-scaffold_91-1510915933:200583..201183 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1491911889:207837..208526 | TCONS_00073398-exon-scaffold_91-1491911889:207837..208526 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1491911889:201727..201954 | TCONS_00073398-exon-scaffold_91-1491911889:201727..201954 | Clytia hemisphaerica | exon |
TCONS_00073398-exon-scaffold_91-1491911889:200583..201183 | TCONS_00073398-exon-scaffold_91-1491911889:200583..201183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_91 | supercontig | scaffold_91:200583..208526 - |
Blast
The following BLAST results are available for this feature:
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