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TCONS_00073398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073398
Unique NameTCONS_00073398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073398 ID=TCONS_00073398|Name=TCONS_00073398|organism=Clytia hemisphaerica|type=transcript|length=1519bp
AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG
TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT
TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT
GCATGGTAAGAccttattttgactttttattcgtttgattttcataaaaa
tggtcGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG
ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT
TCATCGTCTCGGAACTTATTAGGACCCCTtatcacttttttgaaaataca
tttaGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG
GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC
GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA
CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA
GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA
AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA
CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGCAAGTCTGAA
GGCAATATTGTTCCACCATAACCTTCCAACACGTGGTACAAAGGACGAGA
TTGTGCTCAACGTTTGCCTTCTTAAGGAGGATTCGAGAGCACTGTATCAG
CAAAAACTACGTTTCTTCTCTCCTCGAGCTAATAAAAAAGACCAGCACTC
TCATTTGTCGGCAGAGACATTCTTGTGCAGTCCGTTCCAGAAAGAGCCGA
AAGTTTGCCACACCACAGGAACCAAGTATTTCGATCAAGAATCCTAGAAA
AAGCGCCAGTGAGGTATCGACATATAACAAAAGCAGAATTGATGTCCCTT
CTGGTATAGACGAGAGCAACATCGAAACGTTGTTCGAGCCCCTGAGGCAA
GATCTTTTGGCCATCTCAAGATTTGAAGAGGGTGACAACGAGCAAAACGA
CAACGGGAACAATGAAGGGGACACGGTGGAAACACACATGGAGAGGAATA
CgtatgaaagtttttttgaagttggaGTGAGGGTTGAAGTTCTACGAATG
AAAGAGGAAACGAAAACTGGGAAACGCGGGGGGTGGCTTGTGGTAGTTAT
CCAAGACTTTGATCTCGAAAATGATTGGGTCAGAGTGGAATTTTTAAGTT
ACGAAGAAAAGCTTTTCAAGCTCTACGTCAGTGAACTTCTTCGTGACGAT
AAGTTGAGACTTAAAAGCgctttgttttaaagtttattgTCGTTTTTATG
GTTCAGCTACGATGTTTTTACACGGGTGAAATTCGGGATAAAAAAGAGAA
CCGCCATGTGCgttgaaaaattcactttttcctTACTAAAATTAACATTC
AATTGTGACAGCAAAAtgt
Run BLAST on NCBI

transcript from alignment at scaffold_91:200583..208526-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073398 ID=TCONS_00073398|Name=TCONS_00073398|organism=Clytia hemisphaerica|type=transcript|length=7944bp|location=Sequence derived from alignment at scaffold_91:200583..208526- (Clytia hemisphaerica)
AGTAAATTTCGTGTTTGGGCGTCGGCTCATGGGAAAGAGTTCCTGGTCTG TTCATGCCAACCAGCATCCTCCAAATGGTGTTTGATACCTTCCTTGATTT TACCATTGAATGGCATTAGCCAAGGAACATTGTTGGCCATATCTCTCCTT GCATGGTAAGACCTTATTTTGACTTTTTATTCGTTTGATTTTCATAAAAA TGGTCGGATCCCATCAAACATACTCATAACTTGGGTCTCGAATAACTTAG ACGAGTTTTCTACCTTGGCCGTTCGAGTGACAAATATTCCACTGTGCATT TCATCGTCTCGGAACTTATTAGGACCCCTTATCACTTTTTTGAAAATACA TTTAGACAATTAAAGATGATATTGTAATAGATTTCCTTTTAAAACTATAG GTTACCTATCAACGAGGTGAAAGATTATTTTGAAGAAGAGACGGATGCCC GCAAAGAGGATTATCAAGATGCCATTCTTCGCGAAGCATTACAGAAAGTA CCATTCTATTCACAGAAGAAAGAAGTTCTTCAGAAGCTGGCGAAAGAAAA GAGTTTAGATCACACCGGGACAAAGCTGGACATTGCCATGCGCATTTCAA AGGCAGACAAGATTGAGGTGAAAACTAAGTCATTGTATAATGGTCGGAAA CGCAGTATCCAGTCGTTCTCTTCTCAAGTTCATAAGCTTGGTAAGAACTA AATCATTTTTTGAGTTTCATTATTTCAGTAAAACTCCCTGATATTGAATA TCTCAAATTTAAGAACCCAAGACCTCGAGAGGGAAAATATAAGCATATTG TAAGAACATTACATAAGGCTTTGCTCTAAATTATCTGATTTCTTAGGGAA TTGCTTCAAACCACTCGAAAATACTTAATTACTCTAGCAACGTTATTTGC AAACGAGGGCTGTAATGCTTTTATGCATCTCGAGAAGAGTGAATTTGTTT AAATAAACAAAAAGTATGTAGAATTTGGAATATACATCGAAAAATAGCTT TGAGCATAAAGTTCAAAATACCTTTTGGTGTTCAGACTTTGGCGGGCAGA GAGAGAGAGCTTTGATTTTTTTCTAAACTTTATGCCACACCTATTTCTCT CTATTCGAAGCTTTCTACTGACTCACTAGACAGACCTCATTAATCTTGCA CAAAGAGCAGAAAANGAAGCTTTCTACTCACTCAATAGACAGACCTCATT AATCTTGCACAAAGAGCAGAAAAATCTCAATTACAAAGAAAAAATGTAGT TTTGTTTATTTATTTTTTCTGGTGTTCTAATTTTCAGACCTATTGTTAAA AAATCTGTCTGAAAAGACAGGAAAATATTTTTCTGTGCAGGGTTCGAATT ATAGCTTCGCACTTCGCAAATTGCGAAGCAATTTCAGGTTTTGGCGAAGA AAAAAGTTTTTTGAGATAAAAATTGCGAAGCAAAAATTTTTAAGCGAAAC TTAAAAATTGAAATGCAAAGAGAAAAAAGAATCTAACACAGTCTGTATAT GTAATTTAATGAGTGGGATCACACGCCTGAATAAACACTTTTTTAAAGTC TTTCTATATTCACTTCATTATGTTTATCAAAAAAACATAATCTCTTTCTA GTACATAAAAATTACTTTTGTTTGCTGAAAGCTTAGTTATAAATAAACCT ATGAATGTTTTTGATAAACAATTAATAATACACTTATTGTATGCCCCAGA CTTTCTTTTTTGGTAGCAGACATGATATATGATAGAAGATGAAATAATCT TTTTCACATTCACACTTTTTAAATTAAACAGGTGTACCAGGAAGAAAATT GTCACGCAATGTTCTAGTTGTTTCACAATCTTTATGATGTAATAATATTT TTTCAATAGCTTTTTTGTTCGTTATGTATTATATTATATATTAGAACAGA AAGAGAGCGGTCACACCAAATGATTTACCTCCGCTTATATAGCTGTTGTC ATAACAACAAATATTTTTATCTATTTTTTGATGTGACCACTCGAAAAAAT GGAAGAAAAAATCCTGAATTCGAGGAATCACCTGTTTTAATAAGCGAAAG NTCTTATCGTAGTTTAAGAAGAATTCCTTTATGTTTAAATAAATAGGTCT ATTGAAAATGGCGATTTGTGTTTACTTTTCAAATTTTGAAAATTTTAAAA AGATGTGCACATATTTTTTTGCACACGCCATTACCATCCACACACAAGAG AAAAACAGAGTTGTGTCGAGGCTTTTTATTTCGAATGAATGAATGAATGA ATTTTTATCCACACAAATCTTTAGACTTATTAGAAATGTTGATTGAAGTT TTCCGACGCGCCGCTTAAAATAAGCAAAAATGGTGATTCCTTTTTAGCAT TAACTAAACTTATATTTTGGTGTGACCGCGCTCAAAGAGAGCAAAGATAA CCTACAAATAGAATTGACGTCATAAATGAAAATTTGAATAAAGTAAATAG CAAAAAGTTTTTTCATGTATTTCATTTGTTTTATTCAAAGCTATTGAAGC TCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTAATTTCATTCTTC GTTCATTTTCATACCAACATGGCTTCGTTAACAACTGTAAATAAGTGGCA AAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTGTCGATGGAAAGG TCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCTGACAAGATTAAA GGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTACAGAATCTATAAA GAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTCATAAACATGCAA AGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCTTATAACAAGGAA ATTGTTTCAAAAACACCGATTGGTAAAGGTTTAACAAAAATGCAAGAAGA AGATGAAAAGGTAATAAGTTTTTGTCATAATTTTGATTAACTACATAATC TGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAATGATTAAATCAT GAAAATTTAGTTCCTTCTAAAAATTAATTACCCAGCTGGCACACAACGTT GTTTCAACGTACATCTAACGTTCATAACGTCCATAAAACGTTATATGAAC GTTAAAACGTTATATGAACGTTAAATCAGTTATATGAACGTTAAAACAAC GTTTTGTGCCAGCTGGAGAGTTGCGTTTTATTTTAAAGCTCAAATGCTAA TTTTCTAACATACTTAGACAAACCTTTTTCAGTCAGTAAACAAAACTTAT AAATGTCTTAAGTTTTTAAATTGAAGAGGGGTGTCTAGAAAAAAGTTTTT AATTGGTTTCACATGATTTTTGTATAGTTTTAAAGAGTAGTATTTCGAAT AGAGAATGGAGTGAAAAAAATAGAATCCCCCCTGTATTTATAATTTCAGA TCCTGCGCACCAGATTCAACACAGCATACTATCTATGCAAAAAGGAACGA CCGTACAGTGACTTTTCAGATCTACTGAGTTTGGAGGAGAAGAACGGTAT GAAAAAGAGTCACAGTTACAGGAATGACAGAGCTGCTGCTCAATTTATCG ATACGGTTGGTAAGGAGATGAAAGATTCTTTTGTGAATGATCTTTTGAAT GCCAACTACTATTCAGTATTAACCGATGGGAGTACCGATGCAAGCATCAC AGAACAAGAGGTAGTATATGTTCTCTATCTATCTGGTGGTGAGCCAAAAG TTAAGTTCTTAGGAATAGAGGCTCCGGATCAAGCAACTGCTGATGGATTG AAAGAAAATATTGAAAAGGCTTTTCACAATATCGGGATAACTCCTATGTA TGATTCCCTTGCCAATCTGTGTGTTGATGGAGCTTCTGTTAATACAGGCA TCCATAATGGTCTTGGTGCTAAGATGCAAGTTCATGCACAATGGCTAACC ATTATCCATTGTTTTAACCATAATCTGGAGCTAGCCGTTAGGCGAACCCG AAAAAATTTTTTGTTTCCGGTCCACCGGCCGGGTNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTATAACTCACTCTAGCTCCTTGGATATTGAAAATAAGTTATGAAA ACGGGGTATAGGAAACTTTCTACACCTAATGCCGCTCAGAAAATGCAAAT ACATCTGTTACTTTAGAGGCTGGGTAAAAGATATAGCATCTTGAAGGTCA ACCAGTATTTTGGAGCCCAGAATCAGCATTGACAAAACCGAAAATTCTAA ATATGAGAAAAAGAAAAAAGTCTTGGAATTCTATTCCTATCACCTTGAGT TAGTAGTTTATAACAAAAAATTAACATTATATATAATNNCAAATTCTGTC ATTTTTTTGCAAAATATAGGAGAAAAATATCTTTAAAGCTTAATATTTTC AGTTTCAGTTATGCTTTTTTTCTAAAATTTTCACAACTTTTTCCATACAT GAATGGAACTATTTTCAAAAGAGATTTGTTTTCAAAAACTTAATAAAGAC GTTGTTAAATCAAAATTGTCATTTTGAAAATTTCTAAATTTTCAGTTTGG ACTTTGCAATATCGAAAATCTTGAAATATTTCATAAAAATCATAAATTTT ACATCCATCGGGTCGTAAATTTAAGGGAAAACACAAATATGCTCATAGTT TTCCCCCCTATTACAACTGGGCTTAATAATTTGATTTTAACTATACCTCC GTTTTGGGTGCCCCAAACCTGCATTTTGACAACCAGGGGTATACTGTAAA AATTTTATCAAATAAGTTTATGCCCAAAACCCTCTAAATCATATTTCAAA ACTATGGTCAAAATTTTGTATTCATATCTTAAAGATATCTCGAGAANNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNATGTTGTAGATAGAACAATAGATCGTAAATAT AGATCGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTGCTTCGC AAACATCTAAAAATTTTCACCTGCGGCGCTATCCCGCTCGCTTCGCTCGC ATTTTTTTAGCGAAGCTCCTCAAATTTATAATTCGAACCCTGCTGTGTAT CTCGTGAAAGAGTGTATTTCCTTTTATCCTGACCTAATAATAGGCCGATC AAAGAGCGAGAAAATGAATGAAATCTCTGTGAATAGCGGGAAACTTAAGA GGGAAAGAGCAAATTTTCATAATTTAACCTTTTTCTTAAGTAATCCTTTT TTCCTTTTTTCAAAAGGTATAGCAAGTCTGAAGGCAATATTGTTCCACCA TAACCTTCCAACACGTGGTACAAAGGACGAGATTGTGCTCAACGTTTGCC TTCTTAAGGAGGATTCGAGAGCACTGTATCAGCAAAAACTACGTTTCTTC TCTCCTCGAGCTAATAAAAAAGACCAGCACTCTCATTTGTCGGCAGAGAC ATTCTTGTGCAGTCCGTTCCAGAAAGAGCCGAAAGTTTGCCACACCACAG GTAGGGACCGCAATAACTTTTTAAAATCTTTTTAGCTTCTCAAAAGCTGG GCTATTCGAAAGAGTTTTAAAAAAGAGAAAAGACGAGGGGGCATTTGTTA AAACAAGTTTCTTGGTTAAAATCGGTTAAGCTGTTTATAAGATGCTGCAT TTCCCGGCTTAAAAATAAGCTTCATTGGATAGCTTTGGAGCATTTTTGGG GAATTCATGGATAAATCAAGTCAAACGCACTTTTATAGCTTTGCATGATG TAATTGTCTCCTTTATTGTGTAATAATTAAAACAGGTAAAACATCGTGTA TTGATTTTAAATATGGGCTCCGCTACCCCTAAGCTCGCTTATAAAGTAGA GTCGTCTGCCATTGTAATCCTTTGAAAAAAAATTTTTCAACGAAAAATAA AATTTAGATCAGCAGAATTTTGTCAAGACAGTTATTTTATGATACGAATT TCAGTCCATGATTTCGGGAGGTATAGATCACGAGATCCTGATTTTAGTGA AACTCCGATCATTTACCCCTGTCTTTTGCTGTCTCTACCACAGGAACCAA GTATTTCGATCAAGAATCCTAGAAAAAGCGCCAGTGAGGTATCGACATAT AACAAAAGCAGAATTGATGTCCCTTCTGGTATAGACGAGAGCAACATCGA AACGTTGTTCGAGCCCCTGAGGCAAGATCTTTTGGCCATCTCAAGATTTG AAGAGGGTGACAACGAGCAAAACGACAACGGGAACAATGAAGGGGACACG GTGGAAACACACATGGAGAGGAATACGTATGAAAGTTTTTTTGAAGTTGG AGTGAGGGTTGAAGTTCTACGAATGAAAGAGGAAACGAAAACTGGGAAAC GCGGGGGGTGGCTTGTGGTAGTTATCCAAGACTTTGATCTCGAAAATGAT TGGGTCAGAGTGGAATTTTTAAGTTACGAAGAAAAGCTTTTCAAGCTCTA CGTCAGTGAACTTCTTCGTGACGATAAGTTGAGACTTAAAAGCGCTTTGT TTTAAAGTTTATTGTCGTTTTTATGGTTCAGCTACGATGTTTTTACACGG GTGAAATTCGGGATAAAAAAGAGAACCGCCATGTGCGTTGAAAAATTCAC TTTTTCCTTACTAAAATTAACATTCAATTGTGACAGCAAAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045550XLOC_045550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073398-exon-scaffold_91-1575043694:207837..208526TCONS_00073398-exon-scaffold_91-1575043694:207837..208526Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1575043694:201727..201954TCONS_00073398-exon-scaffold_91-1575043694:201727..201954Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1575043694:200583..201183TCONS_00073398-exon-scaffold_91-1575043694:200583..201183Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1510915933:207837..208526TCONS_00073398-exon-scaffold_91-1510915933:207837..208526Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1510915933:201727..201954TCONS_00073398-exon-scaffold_91-1510915933:201727..201954Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1510915933:200583..201183TCONS_00073398-exon-scaffold_91-1510915933:200583..201183Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1491911889:207837..208526TCONS_00073398-exon-scaffold_91-1491911889:207837..208526Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1491911889:201727..201954TCONS_00073398-exon-scaffold_91-1491911889:201727..201954Clytia hemisphaericaexon
TCONS_00073398-exon-scaffold_91-1491911889:200583..201183TCONS_00073398-exon-scaffold_91-1491911889:200583..201183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:200583..208526 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0810422 0.0263282 0 0 0 0.573996 0 1.59758 0.465695 0.590896 0 1.4136 0.946664 0.726298 0.184267 0.11535 0 0.0832146 0.114742 0.150299 0.0261382 0.0764044 0.0309822 0.0563891 0 1.45947e-07 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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