TCONS_00073397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073397
Unique NameTCONS_00073397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073397 ID=TCONS_00073397|Name=TCONS_00073397|organism=Clytia hemisphaerica|type=transcript|length=622bp
ACGAAAGCCTTTGTGAAAACCGTTGGTCTAAAAAGTACTTTGTTGAGCAC
CAACGGTTGTTTACAAAACAAGTTGCATCTTCTGGTACTGTTACTTCGAT
CACTTCCCCAAGCCGTCCGCTTAAATCTCTTAACCNCCAAGCCATCCGCT
AAAATCTCTTAACCAAAATGAAAGATATAGAACTGCCAACGATGTGTGTA
AAAGCCTTGCAAGTTTGGCTTCGGAGACTGGGGGCACTATCTTCAACGAA
CGTATAAGCCAACTCAAAGCTTTAGAAGAGATATGGCTGAATGGAGAAGA
ATTTCGAATTCTCACACTAACGAAATCCAGCCAAACCAATGTAGTCAAGT
CTGATCCAAAACCAATAGtaaGCAATACGAATGTTTGCAATGGAGAAGAA
TCGCAAGTATCAAAACTAAAGCTGCCTCCAAAGATTAAGGTTAAAAAGAC
CGAAAGGATCAGGAAAGACAGTGATAGGGTTAACAAGAAAAAAGAAGTTA
AATGAATCCAAATCGAATATCAACGAAAAGCCACAAAAAGTACCAAAGAT
TAAATCTGAGTTTGAGCTTCCTGATCATTTTGAAAGCAACATCGATTGCT
TCGGAGTGAATGGcTATATACG
Run BLAST on NCBI

transcript from alignment at scaffold_91:150733..157016-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073397 ID=TCONS_00073397|Name=TCONS_00073397|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at scaffold_91:150733..157016- (Clytia hemisphaerica)
ACGAAAGCCTTTGTGAAAACCGTTGGTCTAAAAAGTACTTTGTTGAGCAC
CAACGGTTGTTTACAAAACAAGTTGCATCTTCTGGTACTGTTACTTCGAT
CACTTCCCCAAGCCGTCCGCTTAAATCTCTTAACCNCCAAGCCATCCGCT
AAAATCTCTTAACCAAAATGAAAGATATAGAACTGCCAACGATGTGTGTA
AAAGCCTTGCAAGTTTGGCTTCGGAGACTGGGGGCACTATCTTCAACGAA
CGTATAAGCCAACTCAAAGCTTTAGAAGAGATATGGCTGAATGGAGAAGA
ATTTCGAATTCTCACACTAACGAAATCCAGCCAAACCAATGTAGTCAAGT
CTGATCCAAAACCAATAGGTGAATAGGCCTTTTCATAAATTACGTCAGGA
ACAACACTTGTCTCGTTTTCGAAATAATGCTACAAATTCCCAACAGATTT
TTTTAGAGGTGCACTCTTTTCATAAAAGTATGAGGTCTCAAGGGTGATGA
TCACCTTGGTAATCGTTTCAAAGCGAGGCAAGTGTTGTTGGTGACGTAAT
TTATGAAAAGGCCTATTTTTATCGATTTTATCGAAACATTATTTGTTCAT
AATTTGTGCGATTAATCTATTTAACTTTTATAACAATAGCGGACAAGTTT
TCAAACTAAATGTAAAAATTCTTTTAAAAACCATATTTACTCTATCTACA
AGCTTTTTTTTTAAATAAGGTCCAGTAAATTTTGGCTCAGGTTGGGCTGT
TCTTTTTCGAATTTTTAATTTGTTCTTAGTATATCTTATTTTGTTAGAGA
AGAATTTGAAACTTTCTTATTTTGAACGCTTCTTTTATTTTTTAGTAAGC
AATACGAATGTTTGCAATGGAGAAGAATCGCAAGTATCAAAACTAAAGCT
GCCTCCAAAGATTAAGGTTAAAAAGACCGAAAGGATCAGGAAAGACAGTG
ATAGGGTTAACAAGAAAAAAGAAGTTAAATGGTATCTTCTATACTGAGTT
TATGAAAATCTTCTGTAACGCTAGCCCAGTAACATATTAAGGTTTCTAAA
ATTTGAACGCCGCGGCTGGAAAACCTATCCTCCTTCGATACAAAAAGTCT
CGCGCTAAGTTTGACAAGCGTAGAAAACTCGGATTAGAGAAGACTCTACA
CTGCTATTTGTAAACGAAAAAAGTTCTGACGTCAATTTCACGAAAAAGTA
CTGCGACGTCACAAAGTTTCAAATAAAAAGGTGTTGCATTTTTGTTGCAC
GATTTCGAATTATTTCATATCAACACACGCAACAAAATCCAACATTGTTG
TTTGATGATTAAACTTCGTCTAAAATTATTTAAAAAGGTTTCAATGTTGG
TTGCATTGCATATGCGCCACGGTCTTAAGCTGTCCGCATGTGAAGCCAAC
AAACGGGAAAACCGTCAGTGCTCAATCGCAAAGCGCGAACCTCTCCTTCA
CAACTAAGGCTTTTTCTTTCCTAGGAGCAACCCTCTCACCACCTCAGACA
CCTTTGGGTGTCTGCAACGACGGGTACCCTCGATAATTTTGACAGAGTCA
CTATGGCATTTCATTGAACACAAACTTCCGTTATCTTAAAAAGGCATATC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTATTTCTATATATGTTCACTGAATACAACGACTAGTTCCA
AAAGGCGCTATTTACTAAATAAACGGTGGAGTGCTTTTTCTACCGCGGCG
GAGTGCTCACTCACTCTCACGGATTAGAATAAAAAAGTAAACAAAACTCG
GTACTTTTTACACTTTATTATTATGTTTTTTTTAATGAGACTCTTGAAAA
ACTAATTGCTAAACTAAATTAACAGCGTTTTTGAAAACTTGTTTTTTATT
TTGTTAAATGAGAGGTGTTTTATCATCTTATAGTGCAACATTTGGATATA
CAATTCAATTCACTCAAATCAAAACAAACTCACATCCTGATTATTTTTTG
ATTTTAATTTATTATAAAAGAAGGTGAGTACAATGGAATATCAGTCAATT
TAGAAGCTTTTTTATTTTGAAAAAATTGAAAGTACTTGAGACAAGATACC
AACAACAAGACAAAGAGTTAAATAAAACTATTCACAAAAAGTATGATTTG
TTTGTCTGAATGAAAAGAATATAAACTGAGCTGTACCTACCAGCTAGGTA
CTCCAAAACAAAAATATTCATATAAGGGGAAAAATCTCTTTCAAAAGAAA
AAGATGAACATTTTTTTAGAAAAACGACATCAAAAATATTAAAGATCAGG
GGATCAGGGATCAACTTTTTTTTTTATAGAAGCCAAAAAGAAAAATATTT
CCAAAAAAGCAACAGCTTTTACAAAACATAAAATTATATGTATTTGTTCA
TATTGAGCTCCAATTTTGCTATAAAAATTATATATAGTATAGCTACATAA
AATTACTTCCAAATCCAAGTAGATTGTTTTTAAATTGGCAAAAGTCCAAT
CAAAATTTTCATAAATTTTATAAGTATATAAGCAGTATAAGTTTTGAAAG
ACTTTCACAGTAGGTATAAATTTCAGTCTGAACGTGTTCAACAACACCAG
GGGACAACAAAAAATTACAAGGTAGAAGTAAGCTCCGAGGGAGGGTGGCA
CCAACCTTGACGACCGACGGGGATGTGCCCTGCTTTGGAGTTTGAAAAGT
GGACCCTGTGAGATATGAATGTTTGGTAAATTTAGTACCATTTCAGAACG
ATAAATGATTCAATCGAAAAAAATCTGTGAAGTGGCAAAAATGACTTAAA
GTAGACGAAAAATTCAAATATTTTCTAATATTTCTAATATTCTCACTGTA
AAAATTGTCTAAAATGACCAAAAATCGACCCAGTCAGGGTTACTATCTTG
AAAATTAGTACAAATTTGGCACCCTATTATATATCTCTAGAGTCTGAAAA
AGGGACCCTGATCAGCGGCATGTCCCCATACTTAATTTTGCCTAAGTGCC
CCCTGGAAGTCTGCCATTAGTGAAAACCCAAAACATCCTCGTACATCTAA
CAATTTCAAGGTAGTGAAATCCAGCTAAACAACGGCCGGGCATCCGAAAA
CCCAGAAAACCAGTCATCTCAATGTAAAATGTTGTTATTTTCATTCACAA
ATAGAACCAAGATGTGTCTCACTGGTCAGCTTGTCAGAATTTTGTTTTCG
TATAAAAATCATTCAATTTTTAAATTCCAAATTACCACTTTCACTTTTCA
TCATTTCCACACCATGTATCGCACCACCATACTTTCCATCTTAATTTTTG
AGGATTTCTGTAGCCATTTCAGAGTTACATTCTCTGGGATAAAGTTATCA
AGTTTAACTTGTACTATAGAAAAAGCAGTGATCTGTTACCCAATGAATGT
GAGCATAAACATATTGAACATTCCCTGCAAAAAGTATCCTGCATGCAGTC
ATGGAATCTGTGTTCAGATGTGTCATATTGTCATAAATACTGCACTTCCA
CTATAGATTTACCAACGTATACCAAGCCAACAAAATTTCAAAGATGCCAG
CTGTTAAAACATGTCATGAATGTTTATAACCATACATAATCAAAAAATCT
TTCAATCACAACAATCACATGAAAAAGTGAAAGTATAATCCATATAAAAG
TTTGTTTGTTTTTTGAATATATCAACGTCCCAACCAAGCCAAAAACAATG
TATGAATAAAGTATCTGAGATATAGAATGCCAAGACAGTTTAAATCTGTG
TTTATAAAAATTTAAAAGCATTAAAAATCTTCTCTTCTCAGTTTAGCAAA
GAAGTTGGAGAAGTCCTCGCCACGTTTTTCTGTTTGTGTTTATATTTTTT
TCTCATCCATAACTCCGAGAAACTCAAATATTGCGATGAGAATAGAAGAA
AAAATAAGCCGTGTCCATTCATTTTATCTTCCCTCTTTTTTGAGGGAACG
TTGCCTGAGATTAGATTGAAGCAAAATCCCGTATTGCACCGTTTGGAACT
AGTCTGTCTTTCCAATCCACTCTCTCGCGGCAATTTCTATTTTTTTTAAG
AACTTTTTATTATAAGCACTATTCCCGCGTTGCTGTGTCCAAGGAAAGGC
AGACGCTTGCTAGTCTAGTTTTTACGCAATTTAGAGCATCAAAATACGAA
TAAAGTTACGTTAGAGTTGGTTGGATAAAGGCAGTGATTCCTGACCTGAT
GCATTCCTTTTATAACAATCGTTTTTAAATATCCAAGAAACTGAATTTTA
GTCTACTCTTTTGCAACTGTTGATATTTCTATAGAATCCAAATCGAATAT
CAACGAAAAGCCACAAAAAGTACCAAAGATTAAATCTGAGTTTGAGGTAA
TGCATATCATTTGAAAGTAAAGACAGGCAGCAGTTGCAGAACAGAAGTAG
TTTGCCCTATTTCTTTTTGTTTTTTCGTTAGGTATGAAATATACAGATCT
TCGTTCAAAACTTTAAATGTAGCTATTTTAAGAATTAAAGTATAAACGCA
GCAAAAACTTCGCATTTTCAATTACACTTGTAATTGATTAAGATTTTTGC
TTGCATTGCAACCTGTTAATATAATGCAAAATGTCTTAAACATTCAGCCT
GAACTTACGGTAACTTTTGTTTTGGCTATTACAACCGATCCATGTATGTT
AAATGTATTTTATTGCGTGGGTCATTCTCCAACTGTCTAAAGACCAAATT
TTTATTATAATGATTTATCAATACATACAATGTAAGCTTTGACGAACTTT
TATCATTCTTGTTTTTTCCTTTCAGCTTCCTGATCATTTTGAAAGCAACA
TCGATTGCTTCGGAGTGAATGGGTAAATATCTTCTTTAATTGATAGCTCC
ATACACTTACTTCTAAACTCCACAAAACCCTGTATAGAGAATCTAAGCCA
GAAACTTGCGTCATAAATTTCTCTTTAACCCAGGAAAATGGGTACTCCCC
GGGGTACTCTTAGTTTCATGTAAAGAATATTAAGTAAGGGGTTTCGATTC
GTTCNAATTTCTCTTTAACCCGGGAAAATGGGTACTCTTAGTTTCATGTA
AAGAATATTGAGTAAGGGGTTTCGATTCGTTTATTTATATTATTACGATA
AGCGATATTAAAAATCATTTAGCATTTCGTACTCTTTAAAATAAATCCAA
TGCAACCTTTTCTACAAAATACTTCAAATCCTCTTTGGGTCAATGGACTT
TCTACTCCTTGAACGGGTGACATCAAACGCATATGTGAGAGGCTAAAAAA
TTCTTCCTTTGAAATTTCTTTAAATATCTTTCATATCTTCATGTTTCTTC
CTTGTTTTGTTTCTTATTGTCGCATCTTGACCTTGTATACCAATTACATT
TTTGAAGGCAGATAACGGCTTTAAACCGGGGTCATTTAAATAGCGTGAGT
CATAGCCTGGGAATCCATGCTATGATTTCTTCTTTGATAAACTGATGGCG
AAATGTATAGCATGGTATGGGCTGAGAGTTTGAATTTCTCAGATCCTAAT
AACGGTTGAAAACATAGCCAATCAAATTTTGTTATTCTTTTACTTGTCAC
ACTTTCTTAGAGAAAGCGCAACTTTTGAAATTTGGTTTTAATTTTAGTAA
GCGAGGACAGCGCTAAATTCGAATTTCCCACTGTAAAAAGTGTGAGTCCA
ATATTGGACTCACAGCTCGAACCCGTCTTGTGTACATCAAATTATAAAAA
AACACACGACGGGTCTCCTGTCTACATGAGTCAAAACATAAGGATTTTAA
TAAAACAGGATCAGTCGGACCTTAGATCGTTTTTTTGTCTTGTTCGCTTT
CGATATGATTGTTTTTTTTTGTTAGCTATATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045549XLOC_045549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073397-exon-scaffold_91-1575043694:156649..157016TCONS_00073397-exon-scaffold_91-1575043694:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:156036..156171TCONS_00073397-exon-scaffold_91-1575043694:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:152221..152282TCONS_00073397-exon-scaffold_91-1575043694:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:151745..151791TCONS_00073397-exon-scaffold_91-1575043694:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:150733..150741TCONS_00073397-exon-scaffold_91-1575043694:150733..150741Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:156649..157016TCONS_00073397-exon-scaffold_91-1510915933:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:156036..156171TCONS_00073397-exon-scaffold_91-1510915933:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:152221..152282TCONS_00073397-exon-scaffold_91-1510915933:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:151745..151791TCONS_00073397-exon-scaffold_91-1510915933:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:150733..150741TCONS_00073397-exon-scaffold_91-1510915933:150733..150741Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:156649..157016TCONS_00073397-exon-scaffold_91-1491911889:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:156036..156171TCONS_00073397-exon-scaffold_91-1491911889:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:152221..152282TCONS_00073397-exon-scaffold_91-1491911889:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:151745..151791TCONS_00073397-exon-scaffold_91-1491911889:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:150733..150741TCONS_00073397-exon-scaffold_91-1491911889:150733..150741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:150733..157016 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.85393 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171805	0	0.194526	0.190314	0.463377	0.0915418	0.441765	0.413575	0.0723884	0	0	0	0.171393	1.06796	0.0487783	0	0	0.0660968	0	0	0.166111	0	0.0984941	0	2.46984	2.85393	0.117789	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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