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TCONS_00073397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073397
Unique NameTCONS_00073397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073397 ID=TCONS_00073397|Name=TCONS_00073397|organism=Clytia hemisphaerica|type=transcript|length=622bp
ACGAAAGCCTTTGTGAAAACCGTTGGTCTAAAAAGTACTTTGTTGAGCAC
CAACGGTTGTTTACAAAACAAGTTGCATCTTCTGGTACTGTTACTTCGAT
CACTTCCCCAAGCCGTCCGCTTAAATCTCTTAACCNCCAAGCCATCCGCT
AAAATCTCTTAACCAAAATGAAAGATATAGAACTGCCAACGATGTGTGTA
AAAGCCTTGCAAGTTTGGCTTCGGAGACTGGGGGCACTATCTTCAACGAA
CGTATAAGCCAACTCAAAGCTTTAGAAGAGATATGGCTGAATGGAGAAGA
ATTTCGAATTCTCACACTAACGAAATCCAGCCAAACCAATGTAGTCAAGT
CTGATCCAAAACCAATAGtaaGCAATACGAATGTTTGCAATGGAGAAGAA
TCGCAAGTATCAAAACTAAAGCTGCCTCCAAAGATTAAGGTTAAAAAGAC
CGAAAGGATCAGGAAAGACAGTGATAGGGTTAACAAGAAAAAAGAAGTTA
AATGAATCCAAATCGAATATCAACGAAAAGCCACAAAAAGTACCAAAGAT
TAAATCTGAGTTTGAGCTTCCTGATCATTTTGAAAGCAACATCGATTGCT
TCGGAGTGAATGGcTATATACG
Run BLAST on NCBI

transcript from alignment at scaffold_91:150733..157016-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073397 ID=TCONS_00073397|Name=TCONS_00073397|organism=Clytia hemisphaerica|type=transcript|length=6284bp|location=Sequence derived from alignment at scaffold_91:150733..157016- (Clytia hemisphaerica)
ACGAAAGCCTTTGTGAAAACCGTTGGTCTAAAAAGTACTTTGTTGAGCAC CAACGGTTGTTTACAAAACAAGTTGCATCTTCTGGTACTGTTACTTCGAT CACTTCCCCAAGCCGTCCGCTTAAATCTCTTAACCNCCAAGCCATCCGCT AAAATCTCTTAACCAAAATGAAAGATATAGAACTGCCAACGATGTGTGTA AAAGCCTTGCAAGTTTGGCTTCGGAGACTGGGGGCACTATCTTCAACGAA CGTATAAGCCAACTCAAAGCTTTAGAAGAGATATGGCTGAATGGAGAAGA ATTTCGAATTCTCACACTAACGAAATCCAGCCAAACCAATGTAGTCAAGT CTGATCCAAAACCAATAGGTGAATAGGCCTTTTCATAAATTACGTCAGGA ACAACACTTGTCTCGTTTTCGAAATAATGCTACAAATTCCCAACAGATTT TTTTAGAGGTGCACTCTTTTCATAAAAGTATGAGGTCTCAAGGGTGATGA TCACCTTGGTAATCGTTTCAAAGCGAGGCAAGTGTTGTTGGTGACGTAAT TTATGAAAAGGCCTATTTTTATCGATTTTATCGAAACATTATTTGTTCAT AATTTGTGCGATTAATCTATTTAACTTTTATAACAATAGCGGACAAGTTT TCAAACTAAATGTAAAAATTCTTTTAAAAACCATATTTACTCTATCTACA AGCTTTTTTTTTAAATAAGGTCCAGTAAATTTTGGCTCAGGTTGGGCTGT TCTTTTTCGAATTTTTAATTTGTTCTTAGTATATCTTATTTTGTTAGAGA AGAATTTGAAACTTTCTTATTTTGAACGCTTCTTTTATTTTTTAGTAAGC AATACGAATGTTTGCAATGGAGAAGAATCGCAAGTATCAAAACTAAAGCT GCCTCCAAAGATTAAGGTTAAAAAGACCGAAAGGATCAGGAAAGACAGTG ATAGGGTTAACAAGAAAAAAGAAGTTAAATGGTATCTTCTATACTGAGTT TATGAAAATCTTCTGTAACGCTAGCCCAGTAACATATTAAGGTTTCTAAA ATTTGAACGCCGCGGCTGGAAAACCTATCCTCCTTCGATACAAAAAGTCT CGCGCTAAGTTTGACAAGCGTAGAAAACTCGGATTAGAGAAGACTCTACA CTGCTATTTGTAAACGAAAAAAGTTCTGACGTCAATTTCACGAAAAAGTA CTGCGACGTCACAAAGTTTCAAATAAAAAGGTGTTGCATTTTTGTTGCAC GATTTCGAATTATTTCATATCAACACACGCAACAAAATCCAACATTGTTG TTTGATGATTAAACTTCGTCTAAAATTATTTAAAAAGGTTTCAATGTTGG TTGCATTGCATATGCGCCACGGTCTTAAGCTGTCCGCATGTGAAGCCAAC AAACGGGAAAACCGTCAGTGCTCAATCGCAAAGCGCGAACCTCTCCTTCA CAACTAAGGCTTTTTCTTTCCTAGGAGCAACCCTCTCACCACCTCAGACA CCTTTGGGTGTCTGCAACGACGGGTACCCTCGATAATTTTGACAGAGTCA CTATGGCATTTCATTGAACACAAACTTCCGTTATCTTAAAAAGGCATATC ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNCTATTTCTATATATGTTCACTGAATACAACGACTAGTTCCA AAAGGCGCTATTTACTAAATAAACGGTGGAGTGCTTTTTCTACCGCGGCG GAGTGCTCACTCACTCTCACGGATTAGAATAAAAAAGTAAACAAAACTCG GTACTTTTTACACTTTATTATTATGTTTTTTTTAATGAGACTCTTGAAAA ACTAATTGCTAAACTAAATTAACAGCGTTTTTGAAAACTTGTTTTTTATT TTGTTAAATGAGAGGTGTTTTATCATCTTATAGTGCAACATTTGGATATA CAATTCAATTCACTCAAATCAAAACAAACTCACATCCTGATTATTTTTTG ATTTTAATTTATTATAAAAGAAGGTGAGTACAATGGAATATCAGTCAATT TAGAAGCTTTTTTATTTTGAAAAAATTGAAAGTACTTGAGACAAGATACC AACAACAAGACAAAGAGTTAAATAAAACTATTCACAAAAAGTATGATTTG TTTGTCTGAATGAAAAGAATATAAACTGAGCTGTACCTACCAGCTAGGTA CTCCAAAACAAAAATATTCATATAAGGGGAAAAATCTCTTTCAAAAGAAA AAGATGAACATTTTTTTAGAAAAACGACATCAAAAATATTAAAGATCAGG GGATCAGGGATCAACTTTTTTTTTTATAGAAGCCAAAAAGAAAAATATTT CCAAAAAAGCAACAGCTTTTACAAAACATAAAATTATATGTATTTGTTCA TATTGAGCTCCAATTTTGCTATAAAAATTATATATAGTATAGCTACATAA AATTACTTCCAAATCCAAGTAGATTGTTTTTAAATTGGCAAAAGTCCAAT CAAAATTTTCATAAATTTTATAAGTATATAAGCAGTATAAGTTTTGAAAG ACTTTCACAGTAGGTATAAATTTCAGTCTGAACGTGTTCAACAACACCAG GGGACAACAAAAAATTACAAGGTAGAAGTAAGCTCCGAGGGAGGGTGGCA CCAACCTTGACGACCGACGGGGATGTGCCCTGCTTTGGAGTTTGAAAAGT GGACCCTGTGAGATATGAATGTTTGGTAAATTTAGTACCATTTCAGAACG ATAAATGATTCAATCGAAAAAAATCTGTGAAGTGGCAAAAATGACTTAAA GTAGACGAAAAATTCAAATATTTTCTAATATTTCTAATATTCTCACTGTA AAAATTGTCTAAAATGACCAAAAATCGACCCAGTCAGGGTTACTATCTTG AAAATTAGTACAAATTTGGCACCCTATTATATATCTCTAGAGTCTGAAAA AGGGACCCTGATCAGCGGCATGTCCCCATACTTAATTTTGCCTAAGTGCC CCCTGGAAGTCTGCCATTAGTGAAAACCCAAAACATCCTCGTACATCTAA CAATTTCAAGGTAGTGAAATCCAGCTAAACAACGGCCGGGCATCCGAAAA CCCAGAAAACCAGTCATCTCAATGTAAAATGTTGTTATTTTCATTCACAA ATAGAACCAAGATGTGTCTCACTGGTCAGCTTGTCAGAATTTTGTTTTCG TATAAAAATCATTCAATTTTTAAATTCCAAATTACCACTTTCACTTTTCA TCATTTCCACACCATGTATCGCACCACCATACTTTCCATCTTAATTTTTG AGGATTTCTGTAGCCATTTCAGAGTTACATTCTCTGGGATAAAGTTATCA AGTTTAACTTGTACTATAGAAAAAGCAGTGATCTGTTACCCAATGAATGT GAGCATAAACATATTGAACATTCCCTGCAAAAAGTATCCTGCATGCAGTC ATGGAATCTGTGTTCAGATGTGTCATATTGTCATAAATACTGCACTTCCA CTATAGATTTACCAACGTATACCAAGCCAACAAAATTTCAAAGATGCCAG CTGTTAAAACATGTCATGAATGTTTATAACCATACATAATCAAAAAATCT TTCAATCACAACAATCACATGAAAAAGTGAAAGTATAATCCATATAAAAG TTTGTTTGTTTTTTGAATATATCAACGTCCCAACCAAGCCAAAAACAATG TATGAATAAAGTATCTGAGATATAGAATGCCAAGACAGTTTAAATCTGTG TTTATAAAAATTTAAAAGCATTAAAAATCTTCTCTTCTCAGTTTAGCAAA GAAGTTGGAGAAGTCCTCGCCACGTTTTTCTGTTTGTGTTTATATTTTTT TCTCATCCATAACTCCGAGAAACTCAAATATTGCGATGAGAATAGAAGAA AAAATAAGCCGTGTCCATTCATTTTATCTTCCCTCTTTTTTGAGGGAACG TTGCCTGAGATTAGATTGAAGCAAAATCCCGTATTGCACCGTTTGGAACT AGTCTGTCTTTCCAATCCACTCTCTCGCGGCAATTTCTATTTTTTTTAAG AACTTTTTATTATAAGCACTATTCCCGCGTTGCTGTGTCCAAGGAAAGGC AGACGCTTGCTAGTCTAGTTTTTACGCAATTTAGAGCATCAAAATACGAA TAAAGTTACGTTAGAGTTGGTTGGATAAAGGCAGTGATTCCTGACCTGAT GCATTCCTTTTATAACAATCGTTTTTAAATATCCAAGAAACTGAATTTTA GTCTACTCTTTTGCAACTGTTGATATTTCTATAGAATCCAAATCGAATAT CAACGAAAAGCCACAAAAAGTACCAAAGATTAAATCTGAGTTTGAGGTAA TGCATATCATTTGAAAGTAAAGACAGGCAGCAGTTGCAGAACAGAAGTAG TTTGCCCTATTTCTTTTTGTTTTTTCGTTAGGTATGAAATATACAGATCT TCGTTCAAAACTTTAAATGTAGCTATTTTAAGAATTAAAGTATAAACGCA GCAAAAACTTCGCATTTTCAATTACACTTGTAATTGATTAAGATTTTTGC TTGCATTGCAACCTGTTAATATAATGCAAAATGTCTTAAACATTCAGCCT GAACTTACGGTAACTTTTGTTTTGGCTATTACAACCGATCCATGTATGTT AAATGTATTTTATTGCGTGGGTCATTCTCCAACTGTCTAAAGACCAAATT TTTATTATAATGATTTATCAATACATACAATGTAAGCTTTGACGAACTTT TATCATTCTTGTTTTTTCCTTTCAGCTTCCTGATCATTTTGAAAGCAACA TCGATTGCTTCGGAGTGAATGGGTAAATATCTTCTTTAATTGATAGCTCC ATACACTTACTTCTAAACTCCACAAAACCCTGTATAGAGAATCTAAGCCA GAAACTTGCGTCATAAATTTCTCTTTAACCCAGGAAAATGGGTACTCCCC GGGGTACTCTTAGTTTCATGTAAAGAATATTAAGTAAGGGGTTTCGATTC GTTCNAATTTCTCTTTAACCCGGGAAAATGGGTACTCTTAGTTTCATGTA AAGAATATTGAGTAAGGGGTTTCGATTCGTTTATTTATATTATTACGATA AGCGATATTAAAAATCATTTAGCATTTCGTACTCTTTAAAATAAATCCAA TGCAACCTTTTCTACAAAATACTTCAAATCCTCTTTGGGTCAATGGACTT TCTACTCCTTGAACGGGTGACATCAAACGCATATGTGAGAGGCTAAAAAA TTCTTCCTTTGAAATTTCTTTAAATATCTTTCATATCTTCATGTTTCTTC CTTGTTTTGTTTCTTATTGTCGCATCTTGACCTTGTATACCAATTACATT TTTGAAGGCAGATAACGGCTTTAAACCGGGGTCATTTAAATAGCGTGAGT CATAGCCTGGGAATCCATGCTATGATTTCTTCTTTGATAAACTGATGGCG AAATGTATAGCATGGTATGGGCTGAGAGTTTGAATTTCTCAGATCCTAAT AACGGTTGAAAACATAGCCAATCAAATTTTGTTATTCTTTTACTTGTCAC ACTTTCTTAGAGAAAGCGCAACTTTTGAAATTTGGTTTTAATTTTAGTAA GCGAGGACAGCGCTAAATTCGAATTTCCCACTGTAAAAAGTGTGAGTCCA ATATTGGACTCACAGCTCGAACCCGTCTTGTGTACATCAAATTATAAAAA AACACACGACGGGTCTCCTGTCTACATGAGTCAAAACATAAGGATTTTAA TAAAACAGGATCAGTCGGACCTTAGATCGTTTTTTTGTCTTGTTCGCTTT CGATATGATTGTTTTTTTTTGTTAGCTATATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045549XLOC_045549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073397-exon-scaffold_91-1575043694:156649..157016TCONS_00073397-exon-scaffold_91-1575043694:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:156036..156171TCONS_00073397-exon-scaffold_91-1575043694:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:152221..152282TCONS_00073397-exon-scaffold_91-1575043694:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:151745..151791TCONS_00073397-exon-scaffold_91-1575043694:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1575043694:150733..150741TCONS_00073397-exon-scaffold_91-1575043694:150733..150741Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:156649..157016TCONS_00073397-exon-scaffold_91-1510915933:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:156036..156171TCONS_00073397-exon-scaffold_91-1510915933:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:152221..152282TCONS_00073397-exon-scaffold_91-1510915933:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:151745..151791TCONS_00073397-exon-scaffold_91-1510915933:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1510915933:150733..150741TCONS_00073397-exon-scaffold_91-1510915933:150733..150741Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:156649..157016TCONS_00073397-exon-scaffold_91-1491911889:156649..157016Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:156036..156171TCONS_00073397-exon-scaffold_91-1491911889:156036..156171Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:152221..152282TCONS_00073397-exon-scaffold_91-1491911889:152221..152282Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:151745..151791TCONS_00073397-exon-scaffold_91-1491911889:151745..151791Clytia hemisphaericaexon
TCONS_00073397-exon-scaffold_91-1491911889:150733..150741TCONS_00073397-exon-scaffold_91-1491911889:150733..150741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:150733..157016 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171805 0 0.194526 0.190314 0.463377 0.0915418 0.441765 0.413575 0.0723884 0 0 0 0.171393 1.06796 0.0487783 0 0 0.0660968 0 0 0.166111 0 0.0984941 0 2.46984 2.85393 0.117789 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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