Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073395
Unique NameTCONS_00073395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073395 ID=TCONS_00073395|Name=TCONS_00073395|organism=Clytia hemisphaerica|type=transcript|length=141bp
AAATCTCTCAAGAAAATGCTTCATCAACCTATCACCAGAAGAAACTTTCA
AACGAATTTCTATCGAAACTGTCAAGAACTGCATCATGGTCAAGACGAAG
AGCATAGCAATTAAAGACAATGATTTGAAAGCCTTGGCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_91:138319..139622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073395 ID=TCONS_00073395|Name=TCONS_00073395|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at scaffold_91:138319..139622- (Clytia hemisphaerica)
AAATCTCTCAAGAAAATGCTTCATCAACCTATCACCAGAAGAAAGTAAGG AAAAAAAATCGATTCTCGTATTATGGACCAATGCTTTCATGAGATCTGCA TTAAGTTTCATGGGATGCAGACAAATGTAGCTCGTTAAGTAGTTCGTCTA CTATAATTTGGAAAGTGACTAAGTTTCGATTATAAGATGGGCAAAGTATT AATCAACAGCTAATGCTGATGGCAAATGCCGGCATTTCTAAACCTATCAT GTGTGACTTTTTAAAAGTCTTTTCCATACATTGTAAGAGTTACAATTGCC ATGGTCTGCGTGCGGGTGCTATGATTCAGTTATGTCGGGTATATTTGCAG ATCAACTCGACGTTTTCCCACTTAACTTAAAGTGTATCTCAAAAGTATGT GTACACTTTACTTTTCCAACATTTTCTCTGCATCCATTTATGCTATCAGA AAGTTATATATCGTTGGAAAGATAATTTGATATATATTTTGTATTTGATT AGTGCCAAGGACTAATGCGAAATTTGACAATAGAGTGCAGAATATCTTTC CTCTACATTCCTCCATAATGAATCTCGAGTAATCTATTACATTTAATCCG TTACATGTTTTTTTTATAAGCATAACGCTTAAAAGCATATGAAGGCTCAG ATTTGCAAAATTCCTAAGCATAACATGAGCATATATGTCAGCCTAAAATA TATTTCAAGTGGTCATTTTTATCTGTTTAAAAAGGCTTGGTAGAGGTCAA GTAAAAAATAAGACATTCCACGGCTAGCTAACATTCCACAGCTCCCAAAA TCCGAACAAATTTTTACAAAATTTCTGAAATTTCATTAAACACTTGGCTC GGGGTGAATCTTAAGCATATAATAAGCATAAACTATGTCTGGATGCTTTG AGAACTTAAGCATACACGAGCCTGACCAAGGGGCATACACATGCTTATAA AAAAAAACATGTACTCTACATTATAAGTAGGCGAAATTAGACTCTGACTT TATAAAATGAAATTTTTCACACATTAAAATTGAGTCCCTTATGAGCAGCC TCTGAAGTTTCCAATCTCTGAAGGCCCTTGAAAATTAACCATTACAGAGT GTTCCAACGTGCCCATTAAATCTCTTTTAATCTGAAGGTGAAATGGGAAC ACCTACCTATTATTATTCTATTGATTATTAATCATCAATTATTTTGTTCT AGTGTAGCTTTCAAACGAATTTCTATCGAAACTGTCAAGAACTGCATCAT GGTCAAGACGAAGAGCATAGCAATTAAAGACAATGATTTGAAAGCCTTGG CAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045547XLOC_045547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073395-exon-scaffold_91-1575043694:139579..139622TCONS_00073395-exon-scaffold_91-1575043694:139579..139622Clytia hemisphaericaexon
TCONS_00073395-exon-scaffold_91-1575043694:138319..138415TCONS_00073395-exon-scaffold_91-1575043694:138319..138415Clytia hemisphaericaexon
TCONS_00073395-exon-scaffold_91-1510915933:139579..139622TCONS_00073395-exon-scaffold_91-1510915933:139579..139622Clytia hemisphaericaexon
TCONS_00073395-exon-scaffold_91-1510915933:138319..138415TCONS_00073395-exon-scaffold_91-1510915933:138319..138415Clytia hemisphaericaexon
TCONS_00073395-exon-scaffold_91-1491911889:139579..139622TCONS_00073395-exon-scaffold_91-1491911889:139579..139622Clytia hemisphaericaexon
TCONS_00073395-exon-scaffold_91-1491911889:138319..138415TCONS_00073395-exon-scaffold_91-1491911889:138319..138415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:138319..139622 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top