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TCONS_00073393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073393
Unique NameTCONS_00073393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073393 ID=TCONS_00073393|Name=TCONS_00073393|organism=Clytia hemisphaerica|type=transcript|length=322bp
AGGCAAATGGAATCCCAATTCATATCTGTTgttccatttttgatattttt
tatcaatcTATCAACTTCACATACTGCTGCCATTCCTTCTGGAGTCAAAA
CATTTGCCATTTCACCAATGACCGCAACTTGTCTCGATTGAGGGGGGTAC
CGATCTGATACCCAATCAGCATGTTCTAGAGATTTAGAATCAGCTGCTAC
CCATAATTTTTCTTGTCGTTTTTCATCATAAAAATCAACCACTCCGATCA
TACATAGAAAGCTAACAGCCAGTGCAATCAGGATGACTTTTATAGGGTTA
TTTGCAATCGTTCGTCCAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_91:348002..349138+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073393 ID=TCONS_00073393|Name=TCONS_00073393|organism=Clytia hemisphaerica|type=transcript|length=1137bp|location=Sequence derived from alignment at scaffold_91:348002..349138+ (Clytia hemisphaerica)
AGGCAAATGGAATCCCAATTCATATCTGTTgttccatttttgatattttt tatcaatcTATCAACTTCACATACCTATAAAGcgtaattttgaataactt ttagTAATAGTGATTTTATGcgtatataatataataaaacTCACCAGACG CACAATCAGAAACTTTTATATTTAAGACAAAAAGCGTAAACTTTATAGAG ACAGAGTTTACGATTCTAGCCAAATGATGTATGGtatggttggcaaacga tatcatactccaggatgcaagtgaaatttttcaatccacGGAcgtagacg ggggttcggttattatcagtttagggttagggttggagctcgagagtcac aatataaggctgaaggccttcttaggggcattcgtaCCCTGAGACTTAAC Tttggatcccgtagggatccttgtaggggcaccggtagggttgggagctt ttttaattaaggtctgtaaattacacctTATAAGTATTTTTGAATGACAA CTTTCTGTCGTGTCTTGTTGGCGTaagcggttaggcattgggtttgtaaa ccatggttgcttgtatttggtggttcgagccggggtcggagacctgTTTC ACCGTTACgggaaaatttcagaaaaatacttagaaaacagttagaaacaa tacttgagaaagacagaaaatcaggatagtgGATAGGAAATCAGAAAATG GTAGAGGGGaaataagagacgatgcatcctggagtatgatatcgtttgcc aactgTATGGTATCTGTTGACTTTATACATTTAGGGTCAGAGTCTAATCC TTTTACGCAGCTTTTTGCGAGAAGTTGATAATTGTATGGACAGTTATAAA TGATGATGACGAGTTAGTTTAAAACAATAAACAACATACTGCTGCCATTC CTTCTGGAGTCAAAACATTTGCCATTTCACCAATGACCGCAACTTGTCTC GATTGAGGGGGGTACCGATCTGATACCCAATCAGCATGTTCTAGAGATTT AGAATCAGCTGCTACCCATAATTTTTCTTGTCGTTTTTCATCATAAAAAT CAACCACTCCGATCATACATAGAAAGCTAACAGCCAGTGCAATCAGGATG ACTTTTATAGGGTTATTTGCAATCGTTCGTCCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045545XLOC_045545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073393-exon-scaffold_91-1491911889:348002..348071TCONS_00073393-exon-scaffold_91-1491911889:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1510915933:348002..348071TCONS_00073393-exon-scaffold_91-1510915933:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1575043694:348002..348071TCONS_00073393-exon-scaffold_91-1575043694:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1491911889:348887..349138TCONS_00073393-exon-scaffold_91-1491911889:348887..349138Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1510915933:348887..349138TCONS_00073393-exon-scaffold_91-1510915933:348887..349138Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1575043694:348887..349138TCONS_00073393-exon-scaffold_91-1575043694:348887..349138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:348002..349138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.79012 7.04108 4.62086 12.1714 48.686 35.796 22.6022 23.8049 12.4336 19.0056 18.7653 24.0439 23.3841 27.1034 9.44786 14.5389 33.4649 43.2379 29.0334 30.3814 76.4891 72.3967 9.35868 18.3258 72.8041 46.0246 16.3576 9.18806 2.43909 2.13004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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