TCONS_00073393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073393
Unique NameTCONS_00073393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073393 ID=TCONS_00073393|Name=TCONS_00073393|organism=Clytia hemisphaerica|type=transcript|length=322bp
AGGCAAATGGAATCCCAATTCATATCTGTTgttccatttttgatattttt
tatcaatcTATCAACTTCACATACTGCTGCCATTCCTTCTGGAGTCAAAA
CATTTGCCATTTCACCAATGACCGCAACTTGTCTCGATTGAGGGGGGTAC
CGATCTGATACCCAATCAGCATGTTCTAGAGATTTAGAATCAGCTGCTAC
CCATAATTTTTCTTGTCGTTTTTCATCATAAAAATCAACCACTCCGATCA
TACATAGAAAGCTAACAGCCAGTGCAATCAGGATGACTTTTATAGGGTTA
TTTGCAATCGTTCGTCCAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_91:348002..349138+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073393 ID=TCONS_00073393|Name=TCONS_00073393|organism=Clytia hemisphaerica|type=transcript|length=1137bp|location=Sequence derived from alignment at scaffold_91:348002..349138+ (Clytia hemisphaerica)
AGGCAAATGGAATCCCAATTCATATCTGTTgttccatttttgatattttt
tatcaatcTATCAACTTCACATACCTATAAAGcgtaattttgaataactt
ttagTAATAGTGATTTTATGcgtatataatataataaaacTCACCAGACG
CACAATCAGAAACTTTTATATTTAAGACAAAAAGCGTAAACTTTATAGAG
ACAGAGTTTACGATTCTAGCCAAATGATGTATGGtatggttggcaaacga
tatcatactccaggatgcaagtgaaatttttcaatccacGGAcgtagacg
ggggttcggttattatcagtttagggttagggttggagctcgagagtcac
aatataaggctgaaggccttcttaggggcattcgtaCCCTGAGACTTAAC
Tttggatcccgtagggatccttgtaggggcaccggtagggttgggagctt
ttttaattaaggtctgtaaattacacctTATAAGTATTTTTGAATGACAA
CTTTCTGTCGTGTCTTGTTGGCGTaagcggttaggcattgggtttgtaaa
ccatggttgcttgtatttggtggttcgagccggggtcggagacctgTTTC
ACCGTTACgggaaaatttcagaaaaatacttagaaaacagttagaaacaa
tacttgagaaagacagaaaatcaggatagtgGATAGGAAATCAGAAAATG
GTAGAGGGGaaataagagacgatgcatcctggagtatgatatcgtttgcc
aactgTATGGTATCTGTTGACTTTATACATTTAGGGTCAGAGTCTAATCC
TTTTACGCAGCTTTTTGCGAGAAGTTGATAATTGTATGGACAGTTATAAA
TGATGATGACGAGTTAGTTTAAAACAATAAACAACATACTGCTGCCATTC
CTTCTGGAGTCAAAACATTTGCCATTTCACCAATGACCGCAACTTGTCTC
GATTGAGGGGGGTACCGATCTGATACCCAATCAGCATGTTCTAGAGATTT
AGAATCAGCTGCTACCCATAATTTTTCTTGTCGTTTTTCATCATAAAAAT
CAACCACTCCGATCATACATAGAAAGCTAACAGCCAGTGCAATCAGGATG
ACTTTTATAGGGTTATTTGCAATCGTTCGTCCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045545XLOC_045545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073393-exon-scaffold_91-1491911889:348002..348071TCONS_00073393-exon-scaffold_91-1491911889:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1510915933:348002..348071TCONS_00073393-exon-scaffold_91-1510915933:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1575043694:348002..348071TCONS_00073393-exon-scaffold_91-1575043694:348002..348071Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1491911889:348887..349138TCONS_00073393-exon-scaffold_91-1491911889:348887..349138Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1510915933:348887..349138TCONS_00073393-exon-scaffold_91-1510915933:348887..349138Clytia hemisphaericaexon
TCONS_00073393-exon-scaffold_91-1575043694:348887..349138TCONS_00073393-exon-scaffold_91-1575043694:348887..349138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:348002..349138 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (2.13004 tpm) - - (76.4891 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.79012	7.04108	4.62086	12.1714	48.686	35.796	22.6022	23.8049	12.4336	19.0056	18.7653	24.0439	23.3841	27.1034	9.44786	14.5389	33.4649	43.2379	29.0334	30.3814	76.4891	72.3967	9.35868	18.3258	72.8041	46.0246	16.3576	9.18806	2.43909	2.13004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
AGGCAAATGGAATCCCAATTCATATCTGTTgttccatttttgatattttttatcaatcTATCAACTTCACATACTGCTGCCATTCCTTCTGGAGTCAAAACATTTGCCATTTCACCAATGACCGCAACTTGTCTCGATTGAGGGGGGTACCGATCTGATACCCAATCAGCATGTTCTAGAGATTTAGAATCAGCTGCTACCCATAATTTTTCTTGTCGTTTTTCATCATAAAAATCAACCACTCCGATCATACATAGAAAGCTAACAGCCAGTGCAATCAGGATGACTTTTATAGGGTTATTTGCAATCGTTCGTCCAAGAC50100150200250300Sequence
Match NameE-valueIdentityDescription
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