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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073385 ID=TCONS_00073385|Name=TCONS_00073385|organism=Clytia hemisphaerica|type=transcript|length=1444bp
cagGAATGTCAGTGAACGAAAGCAAAGTGAAATATTATACCAATAACCGG
CATCATTATACCAACAGGTGGAACAAGAGAAACTTCGATGCTGAATATGA
AGATGTGAAAAGCATAGAAGAGCTGCCCAACCCAGCTGCTAAGAGTAGGC
GTGCTAAGGAAACTGGCTACACTGGACTCAGCGTTTTGGCCAATCTCAAT
TTTCTGTAtggttttgatgtgtttaaagATATGGTTCATGATGTCATGCA
CTTGGTCTGCTTAAATCTTACACGAAAGTTGTTTGTGAGAATCTTCACTG
TCGAACATTTTGATATCGATGCAGTTGGAAATGAACTTAAAGACTTTCCC
TTTACTTCTGaaatggtTGACGGTCATTGCCCCAAGAACCTATCCAAATT
CAATTCGTGGACCGCAGAGGAGTGGCAAATCTTTGCTTTCCCAGTTGCTG
AATTGTTGCTCCACGAAAAGCTGTCTGAACGGGACTACCACCTGGTTTAT
CTAAATGCCCGCATTGTTGAGCTCTTGTTTCATCACAGAGAGGGACTTCA
AGAAAATGAGATTGCGATTTTGAGGGATTCGTGTTGGAGACGCCTCATCA
TTCTAGAAGAAACTGTCGGTCAGAAACAATGTGTGATAACCGCCCACAAT
TCCCTCCATATTGCTGAAGACATTGAAAGATTTAGCCATTGTGATAATCA
CTGGTGTTTTAGCAATGAGAGAGTGGTCAAACGATACAAGGATTTGCCGA
CGAATTGTAAAAATATCGAGGCAACTTACGCTAAATTGGAGGTGAAGCGA
GAGATACTTGCTGTTGCAGAAGCAAACGAAAAACGAACAACGTATAAAAT
TGACAGAGTCAATGGAATTGTGTCAAGCGTGGAAGGTGCTAAAAACTTCC
CATACACCGACGACATACCCCTTGTCTTTGTTGGGTCAAGCTCCCTGGCC
AATGTTGGCATAGCTGATGACGCGATTCGCGAGGCAATGACGTTATTGGG
TCGTGGAGAGATtgaaatctatcaaaaatatAGATCCTGTTTTGTCAACA
AACGAAACACACTCCTTAAGATTGGGTCGTACGTTCTATTGCAGTGTGGT
AATGTGGGTAAAATAGTGGAATTCATATATTTGAAAAACAACAATGGACC
ATTTAAGTTCGTTCGTGTCGAGTTGTTCTTTTTGCAACAATACGTCAACC
CACAGGAAATCCAGACGCTACAAGCTACTGAGAATTCGGCCGTCGTGGCC
ATTGAAACAGTCAAACGAAAGGTTTTGGTTTACATGAGCAACGAGAAATT
GCTCTGCATGGATTTCAATAGACCTagtttttactttagttttgATGCTC
TCCCCGATGTTATCCCTTGATTTGAATTATACtcaggcgagaccaatttg
attaattGTTTTACGGGctcgaccgaccctgaaattcaaaaaat Run BLAST on NCBI protein sequence of TCONS_00073385-protein >TCONS_00073385-protein ID=TCONS_00073385-protein|Name=TCONS_00073385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
GMSVNESKVKYYTNNRHHYTNRWNKRNFDAEYEDVKSIEELPNPAAKSRR
AKETGYTGLSVLANLNFLYGFDVFKDMVHDVMHLVCLNLTRKLFVRIFTV
EHFDIDAVGNELKDFPFTSEMVDGHCPKNLSKFNSWTAEEWQIFAFPVAE
LLLHEKLSERDYHLVYLNARIVELLFHHREGLQENEIAILRDSCWRRLII
LEETVGQKQCVITAHNSLHIAEDIERFSHCDNHWCFSNERVVKRYKDLPT
NCKNIEATYAKLEVKREILAVAEANEKRTTYKIDRVNGIVSSVEGAKNFP
YTDDIPLVFVGSSSLANVGIADDAIREAMTLLGRGEIEIYQKYRSCFVNK
RNTLLKIGSYVLLQCGNVGKIVEFIYLKNNNGPFKFVRVELFFLQQYVNP
QEIQTLQATENSAVVAIETVKRKVLVYMSNEKLLCMDFNRPSFYFSFDAL
PDVIP Run BLAST on NCBI transcript from alignment at scaffold_91:62057..64329+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073385 ID=TCONS_00073385|Name=TCONS_00073385|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at scaffold_91:62057..64329+ (Clytia hemisphaerica)
cagGAATGTCAGTGAACGAAAGCAAAGTGAAATATTATACCAATAACCGG
CATCATTATACCAACAGGTGGAACAAGAGAAACTTCGATGCTGAATATGA
AGATGTGAAAAGCATAGAAGAGCTGCCCAACCCAGCTGCTAAGAGTAGGC
GTGCTAAGGAAACTGGCTACACTGGACTCAGCGTTTTGGCCAATCTCAAT
TTTCTGTAtggttttgatgtgtttaaagATATGGTTCATGATGTCATGCA
CTTGGTCTGCTTAAATCTTACACGAAAGTTGTTTGTGAGAATCTTCACTG
TCGAACATTTTGATATCGATGCAGTTGGAAATGAACTTAAAGACTTTCCC
TTTACTTCTGGTAACTATGCTTTCCCAATATTTTATTAGCTTGCCCGGGT
TTAATGAACACGTTTGACCTTTTATGCATCACAGAAGGAAGTTTTCTACT
TGTTTTACTTTCTCGGGTAGTATATGGATCAACCAAAAGTCTCCCTATTT
TCTCAAGTTAACATACCCTAGTACTCTTTTTGCTCATTTTTGATGTCAAA
AGAGTCCCCTTTCACAGAATAAAATAAGTATGGCTTGAGTGAGTGAGACA
ATAtataataatacaataattcgggacctcaatttttttacagaaatggt
TGACGGTCATTGCCCCAAGAACCTATCCAAATTCAATTCGTGGACCGCAG
AGGAGTGGCAAATCTTTGCTTTCCCAGTTGCTGAATTGTTGCTCCACGAA
AAGCTGTCTGAACGGGACTACCACCTGGTTTATCTAAATGCCCGCATTGT
TGAGCTCTTGTTTCATCACAGAGAGGGACTTCAAGAAAATGAGATTGCGA
TTTTGAGGGATTCGTGTTGGAGACGCCTCATCATTCTAGAAGAAACTGTC
GGTCAGAAACAATGTGTGATAACCGCCCACAATTCCCTCCATATTGCTGA
AGACATTGAAAGATTTAGCCATTGTGATAATCACTGGTGTTTTAGCAATG
AGAGAGTGGTCAAACGGTAAGTTATTTCTCCTATTTTTCTCTATAAAATA
AAACTACCTTTTGTTACTGCCGTTGATTTTAAAGCACTATCTACACAAAG
ATGTCGAAAGGTACCTTATTCTTAATGAGAAAAGTGATGTAGATATACAG
TGAAAATATGTAATATTCTTTAATTGTGACGAAATTCAGAACATTGGAAC
TTGTGGTACCAGCAATATATTTTGAATACTTTTGCAAACAATTAAATTTG
CTTGTATCAAGCTCGGGAGTCAAATTCACCAACCAAGCAATAAACGaagt
tttttcatctttctagATACAAGGATTTGCCGACGAATTGTAAAAATATC
GAGGCAACTTACGCTAAATTGGAGGTGAAGCGAGAGATACTTGCTGTTGC
AGAAGCAAACGAAAAACGAACAACGTATAAAATTGACAGAGTCAATGGAG
TAAGTATTTTGATGTGTCTTTGTCCTTACTTTCGCTTATTGTTATTTTAA
AGTGAACTTTGTTAACACATTTTAGTCTGGCGATATTAGCTCTATAAAGG
CGCTAACCTTGAAAAAATACTCTCTGGCTGAATAGGTGTCTTGGAACCAC
CAGAAAAAAGCGCAGGAAAAGCTTGGGCATTTTCTTGGTCAAATTTTGAT
ATCGTCACTTTTcagtacaaaaatatttcatattcTTTATTGTAGATTGT
GTCAAGCGTGGAAGGTGCTAAAAACTTCCCATACACCGACGACATACCCC
TTGTCTTTGTTGGGTCAAGCTCCCTGGCCAATGTTGGCATAGCTGATGAC
GCGATTCGCGAGGCAATGACGTTATTGGGTCGTGGAGAGATtgaaatcta
tcaaaaatatAGATCCTGTTTTGTCAACAAACGAAACACACTCCTTAAGA
TTGGGTCGTACGTTCTATTGCAGTGTGGTAATGTGGGTAAAATAGTGGAA
TTCATATATTTGAAAAACAACAATGGACCATTTAAGTTCGTTCGTGTCGA
GTTGTTCTTTTTGCAACAATACGTCAACCCACAGGAAATCCAGACGCTAC
AAGCTACTGAGAATTCGGCCGTCGTGGCCATTGAAACAGTCAAACGAAAG
GTTTTGGTTTACATGAGCAACGAGAAATTGCTCTGCATGGATTTCAATAG
ACCTagtttttactttagttttgATGCTCTCCCCGATGTTATCCCTTGAT
TTGAATTATACtcaggcgagaccaatttgattaattGTTTTACGGGctcg
accgaccctgaaattcaaaaaat Coding sequence (CDS) from alignment at scaffold_91:62057..64329+ >TCONS_00073385 ID=TCONS_00073385|Name=TCONS_00073385|organism=Clytia hemisphaerica|type=CDS|length=5472bp|location=Sequence derived from alignment at scaffold_91:62057..64329+ (Clytia hemisphaerica)
gGAATGTCAGTGAACGAAAGCAAAGTGAAATATTATACCAATAACCGGCA
TCATTATACCAACAGGTGGAACAAGAGAAACTTCGATGCTGAATATGAAG
ATGTGAAAAGCATAGAAGAGCTGCCCAACCCAGCTGCTAAGAGTAGGCGT
GCTAAGGAAACTGGCTACACTGGACTCAGCGTTTTGGCCAATCTCAATTT
TCTGTAtggttttgatgtgtttaaagATATGGTTCATGATGTCATGCACT
TGGTCTGCTTAAATCTTACACGAAAGTTGTTTGTGAGAATCTTCACTGTC
GAACATTTTGATATCGATGCAGTTGGAAATGAACTTAAAGACTTTCCCTT
TACTTCTGaaatggtTGACGGTCATTGCCCCAAGAACCTATCCAAATTCA
ATTCGTGGACCGCAGAGGAGTGGCAAATCTTTGCTTTCCCAGTTGCTGAA
TTGTTGCTCCACGAAAAGCTGTCTGAACGGGACTACCACCTGGTTTATCT
AAATGCCCGCATTGTTGAGCTCTTGTTTCATCACAGAGAGGGACTTCAAG
AAAATGAGATTGCGATTTTGAGGGATTCGTGTTGGAGACGCCTCATCATT
CTAGAAGAAACTGTCGGTCAGAAACAATGTGTGATAACCGCCCACAATTC
CCTCCATATTGCTGAAGACATTGAAAGATTTAGCCATTGTGATAATCACT
GGTGTTTTAGCAATGAGAGAGTGGTCAAACGATACAAGGATTTGCCGACG
AATTGTAAAAATATCGAGGCAACTTACGCTAAATTGGAGGTGAAGCGAGA
GATACTTGCTGTTGCAGAAGCAAACGAAAAACGAACAACGTATAAAATTG
ACAGAGTCAATGGAATTGTGTCAAGCGTGGAAGGTGCTAAAAACTTCCCA
TACACCGACGACATACCCCTTGTCTTTGTTGGGTCAAGCTCCCTGGCCAA
TGTTGGCATAGCTGATGACGCGATTCGCGAGGCAATGACGTTATTGGGTC
GTGGAGAGATtgaaatctatcaaaaatatAGATCCTGTTTTGTCAACAAA
CGAAACACACTCCTTAAGATTGGGTCGTACGTTCTATTGCAGTGTGGTAA
TGTGGGTAAAATAGTGGAATTCATATATTTGAAAAACAACAATGGACCAT
TTAAGTTCGTTCGTGTCGAGTTGTTCTTTTTGCAACAATACGTCAACCCA
CAGGAAATCCAGACGCTACAAGCTACTGAGAATTCGGCCGTCGTGGCCAT
TGAAACAGTCAAACGAAAGGTTTTGGTTTACATGAGCAACGAGAAATTGC
TCTGCATGGATTTCAATAGACCTagtttttactttagttttgATGCTCTC
CCCGATGTTATCCCTTGAgGAATGTCAGTGAACGAAAGCAAAGTGAAATA
TTATACCAATAACCGGCATCATTATACCAACAGGTGGAACAAGAGAAACT
TCGATGCTGAATATGAAGATGTGAAAAGCATAGAAGAGCTGCCCAACCCA
GCTGCTAAGAGTAGGCGTGCTAAGGAAACTGGCTACACTGGACTCAGCGT
TTTGGCCAATCTCAATTTTCTGTAtggttttgatgtgtttaaagATATGG
TTCATGATGTCATGCACTTGGTCTGCTTAAATCTTACACGAAAGTTGTTT
GTGAGAATCTTCACTGTCGAACATTTTGATATCGATGCAGTTGGAAATGA
ACTTAAAGACTTTCCCTTTACTTCTGaaatggtTGACGGTCATTGCCCCA
AGAACCTATCCAAATTCAATTCGTGGACCGCAGAGGAGTGGCAAATCTTT
GCTTTCCCAGTTGCTGAATTGTTGCTCCACGAAAAGCTGTCTGAACGGGA
CTACCACCTGGTTTATCTAAATGCCCGCATTGTTGAGCTCTTGTTTCATC
ACAGAGAGGGACTTCAAGAAAATGAGATTGCGATTTTGAGGGATTCGTGT
TGGAGACGCCTCATCATTCTAGAAGAAACTGTCGGTCAGAAACAATGTGT
GATAACCGCCCACAATTCCCTCCATATTGCTGAAGACATTGAAAGATTTA
GCCATTGTGATAATCACTGGTGTTTTAGCAATGAGAGAGTGGTCAAACGA
TACAAGGATTTGCCGACGAATTGTAAAAATATCGAGGCAACTTACGCTAA
ATTGGAGGTGAAGCGAGAGATACTTGCTGTTGCAGAAGCAAACGAAAAAC
GAACAACGTATAAAATTGACAGAGTCAATGGAATTGTGTCAAGCGTGGAA
GGTGCTAAAAACTTCCCATACACCGACGACATACCCCTTGTCTTTGTTGG
GTCAAGCTCCCTGGCCAATGTTGGCATAGCTGATGACGCGATTCGCGAGG
CAATGACGTTATTGGGTCGTGGAGAGATtgaaatctatcaaaaatatAGA
TCCTGTTTTGTCAACAAACGAAACACACTCCTTAAGATTGGGTCGTACGT
TCTATTGCAGTGTGGTAATGTGGGTAAAATAGTGGAATTCATATATTTGA
AAAACAACAATGGACCATTTAAGTTCGTTCGTGTCGAGTTGTTCTTTTTG
CAACAATACGTCAACCCACAGGAAATCCAGACGCTACAAGCTACTGAGAA
TTCGGCCGTCGTGGCCATTGAAACAGTCAAACGAAAGGTTTTGGTTTACA
TGAGCAACGAGAAATTGCTCTGCATGGATTTCAATAGACCTagtttttac
tttagttttgATGCTCTCCCCGATGTTATCCCTTGAgGAATGTCAGTGAA
CGAAAGCAAAGTGAAATATTATACCAATAACCGGCATCATTATACCAACA
GGTGGAACAAGAGAAACTTCGATGCTGAATATGAAGATGTGAAAAGCATA
GAAGAGCTGCCCAACCCAGCTGCTAAGAGTAGGCGTGCTAAGGAAACTGG
CTACACTGGACTCAGCGTTTTGGCCAATCTCAATTTTCTGTAtggttttg
atgtgtttaaagATATGGTTCATGATGTCATGCACTTGGTCTGCTTAAAT
CTTACACGAAAGTTGTTTGTGAGAATCTTCACTGTCGAACATTTTGATAT
CGATGCAGTTGGAAATGAACTTAAAGACTTTCCCTTTACTTCTGaaatgg
tTGACGGTCATTGCCCCAAGAACCTATCCAAATTCAATTCGTGGACCGCA
GAGGAGTGGCAAATCTTTGCTTTCCCAGTTGCTGAATTGTTGCTCCACGA
AAAGCTGTCTGAACGGGACTACCACCTGGTTTATCTAAATGCCCGCATTG
TTGAGCTCTTGTTTCATCACAGAGAGGGACTTCAAGAAAATGAGATTGCG
ATTTTGAGGGATTCGTGTTGGAGACGCCTCATCATTCTAGAAGAAACTGT
CGGTCAGAAACAATGTGTGATAACCGCCCACAATTCCCTCCATATTGCTG
AAGACATTGAAAGATTTAGCCATTGTGATAATCACTGGTGTTTTAGCAAT
GAGAGAGTGGTCAAACGATACAAGGATTTGCCGACGAATTGTAAAAATAT
CGAGGCAACTTACGCTAAATTGGAGGTGAAGCGAGAGATACTTGCTGTTG
CAGAAGCAAACGAAAAACGAACAACGTATAAAATTGACAGAGTCAATGGA
ATTGTGTCAAGCGTGGAAGGTGCTAAAAACTTCCCATACACCGACGACAT
ACCCCTTGTCTTTGTTGGGTCAAGCTCCCTGGCCAATGTTGGCATAGCTG
ATGACGCGATTCGCGAGGCAATGACGTTATTGGGTCGTGGAGAGATtgaa
atctatcaaaaatatAGATCCTGTTTTGTCAACAAACGAAACACACTCCT
TAAGATTGGGTCGTACGTTCTATTGCAGTGTGGTAATGTGGGTAAAATAG
TGGAATTCATATATTTGAAAAACAACAATGGACCATTTAAGTTCGTTCGT
GTCGAGTTGTTCTTTTTGCAACAATACGTCAACCCACAGGAAATCCAGAC
GCTACAAGCTACTGAGAATTCGGCCGTCGTGGCCATTGAAACAGTCAAAC
GAAAGGTTTTGGTTTACATGAGCAACGAGAAATTGCTCTGCATGGATTTC
AATAGACCTagtttttactttagttttgATGCTCTCCCCGATGTTATCCC
TTGAgGAATGTCAGTGAACGAAAGCAAAGTGAAATATTATACCAATAACC
GGCATCATTATACCAACAGGTGGAACAAGAGAAACTTCGATGCTGAATAT
GAAGATGTGAAAAGCATAGAAGAGCTGCCCAACCCAGCTGCTAAGAGTAG
GCGTGCTAAGGAAACTGGCTACACTGGACTCAGCGTTTTGGCCAATCTCA
ATTTTCTGTAtggttttgatgtgtttaaagATATGGTTCATGATGTCATG
CACTTGGTCTGCTTAAATCTTACACGAAAGTTGTTTGTGAGAATCTTCAC
TGTCGAACATTTTGATATCGATGCAGTTGGAAATGAACTTAAAGACTTTC
CCTTTACTTCTGaaatggtTGACGGTCATTGCCCCAAGAACCTATCCAAA
TTCAATTCGTGGACCGCAGAGGAGTGGCAAATCTTTGCTTTCCCAGTTGC
TGAATTGTTGCTCCACGAAAAGCTGTCTGAACGGGACTACCACCTGGTTT
ATCTAAATGCCCGCATTGTTGAGCTCTTGTTTCATCACAGAGAGGGACTT
CAAGAAAATGAGATTGCGATTTTGAGGGATTCGTGTTGGAGACGCCTCAT
CATTCTAGAAGAAACTGTCGGTCAGAAACAATGTGTGATAACCGCCCACA
ATTCCCTCCATATTGCTGAAGACATTGAAAGATTTAGCCATTGTGATAAT
CACTGGTGTTTTAGCAATGAGAGAGTGGTCAAACGATACAAGGATTTGCC
GACGAATTGTAAAAATATCGAGGCAACTTACGCTAAATTGGAGGTGAAGC
GAGAGATACTTGCTGTTGCAGAAGCAAACGAAAAACGAACAACGTATAAA
ATTGACAGAGTCAATGGAATTGTGTCAAGCGTGGAAGGTGCTAAAAACTT
CCCATACACCGACGACATACCCCTTGTCTTTGTTGGGTCAAGCTCCCTGG
CCAATGTTGGCATAGCTGATGACGCGATTCGCGAGGCAATGACGTTATTG
GGTCGTGGAGAGATtgaaatctatcaaaaatatAGATCCTGTTTTGTCAA
CAAACGAAACACACTCCTTAAGATTGGGTCGTACGTTCTATTGCAGTGTG
GTAATGTGGGTAAAATAGTGGAATTCATATATTTGAAAAACAACAATGGA
CCATTTAAGTTCGTTCGTGTCGAGTTGTTCTTTTTGCAACAATACGTCAA
CCCACAGGAAATCCAGACGCTACAAGCTACTGAGAATTCGGCCGTCGTGG
CCATTGAAACAGTCAAACGAAAGGTTTTGGTTTACATGAGCAACGAGAAA
TTGCTCTGCATGGATTTCAATAGACCTagtttttactttagttttgATGC
TCTCCCCGATGTTATCCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073385-exon-scaffold_91-1491911889:62057..62416 | TCONS_00073385-exon-scaffold_91-1491911889:62057..62416 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1510915933:62057..62416 | TCONS_00073385-exon-scaffold_91-1510915933:62057..62416 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1575043694:62057..62416 | TCONS_00073385-exon-scaffold_91-1575043694:62057..62416 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1491911889:62700..63072 | TCONS_00073385-exon-scaffold_91-1491911889:62700..63072 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1510915933:62700..63072 | TCONS_00073385-exon-scaffold_91-1510915933:62700..63072 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1575043694:62700..63072 | TCONS_00073385-exon-scaffold_91-1575043694:62700..63072 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1491911889:63373..63505 | TCONS_00073385-exon-scaffold_91-1491911889:63373..63505 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1510915933:63373..63505 | TCONS_00073385-exon-scaffold_91-1510915933:63373..63505 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1575043694:63373..63505 | TCONS_00073385-exon-scaffold_91-1575043694:63373..63505 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1491911889:63752..64329 | TCONS_00073385-exon-scaffold_91-1491911889:63752..64329 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1510915933:63752..64329 | TCONS_00073385-exon-scaffold_91-1510915933:63752..64329 | Clytia hemisphaerica | exon |
| TCONS_00073385-exon-scaffold_91-1575043694:63752..64329 | TCONS_00073385-exon-scaffold_91-1575043694:63752..64329 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:62057..64329 + |
Blast
The following BLAST results are available for this feature:
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