|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=transcript|length=1525bp
TTTCTTAATGtcttcaaaatgaagaaaaagggCTGTGCGGCTGTGTGAaa
tgtagcctggatatccaagctcaaaatttaagaaaaaacaaaatttacct
caacatacaaagttcttaaattatagagcttggtctccctagagaatNNN
NNNNNNNNNNNNNNNNNNACCTATGGCGTACGAAATGCACTTTAAATAGA
GTAATACTGTTTCTGACAAAGAAACTAGGTTTTCCAGGGGCAAAAGGTTG
TTTTCGTATCCGATACCCCGATTTTCGTATCCGATATCCCGataaattta
agaaaacatGTTTCTCGGTAGGGAAGAaaggttttcaattttcaagcaTG
AAGAAAGCAGGCAACGAAACCAAACCATCAAAAAACACAAGTGGTAAGAA
GAATAGTTCTTTTAATATTCAAAGTAGTACATGTACGATTTTTTTTGGAC
TCATTATTGCTATCAAAACTAAGGATCACATCTGTTTGAATCGAATGACA
GAATGAAGTTGAAGTAGTCATGTGTTGTTTTAACTGTCTTTTGGCTTTGT
cattccatcatcatcatcaataatCATGTCTGACAGAATTGCGAGGGCTG
GAACATTAGGCCACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGT
GGCTTAGCTAGATCTTTTCCTGAAACCAAAGAtccagaatttgaaaaaaa
gcttAATCAAGCCAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAA
ACGAGGCTAATGTACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCG
AGATATAATGCACTCCCTTTGGCTTCtgttaatgaagaaaaaaagtctcG
TTACAGCAAAAAGACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACA
TTGACATAACACATTTGAAATTCCTTTTGTCCATTGGACATAATGTCAAA
GAAATTGCTGAAAAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCT
GACCAGATTCATGAAAGACAATAACATTCCAACACCAAGGGAGCGCTATT
CTATCATTTCCGATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTA
GATTTTCCGAACTCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGG
AAATCCTCCTCGCATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTT
TCTCGAATCCAGAGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGC
AGAGTTTACAGTGTTCCAACTCCTAATCACCTGTGGCACATTGATACACA
TCATAGTTTAATCAGGTTATACTTAAAGATTGATTTCTGCANGCggtcat
tgaaaaattgttctattcgcgtcacccgcccgcatcaaattttccgctga
ttttccggtgcagagatgcggaaaaaaatctgggaaaagcaatttgttct
tttaaagtatagcttttttctcaattgctctgaagACCATTGAAAAACgg
ttttgctcgcgttaccacccgcccc Run BLAST on NCBI protein sequence of TCONS_00073383-protein >TCONS_00073383-protein ID=TCONS_00073383-protein|Name=TCONS_00073383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSDRIARAGTLGHEEVLEDIELYIRGLARSFPETKDPEFEKKLNQANVNV
QRLAQGNTNEANVQRVHGLVSRLKSRYNALPLASVNEEKKSRYSKKTVSG
KKGNNPYDIDITHLKFLLSIGHNVKEIAEKGLLGGSMHRNTLTRFMKDNN
IPTPRERYSIISDDDLLILIRKIALDFPNSGIREVTALLRTGNPPRIVQR
DRVARLLSFSNPEATARRWAQVVPRRVYSVPTPNHLWHIDTHHSLIRLYL
KIDFCXRSLKNCSIRVTRPHQIFR Run BLAST on NCBI transcript from alignment at scaffold_91:47..1571+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=transcript|length=1525bp|location=Sequence derived from alignment at scaffold_91:47..1571+ (Clytia hemisphaerica)
TTTCTTAATGtcttcaaaatgaagaaaaagggCTGTGCGGCTGTGTGAaa
tgtagcctggatatccaagctcaaaatttaagaaaaaacaaaatttacct
caacatacaaagttcttaaattatagagcttggtctccctagagaatNNN
NNNNNNNNNNNNNNNNNNACCTATGGCGTACGAAATGCACTTTAAATAGA
GTAATACTGTTTCTGACAAAGAAACTAGGTTTTCCAGGGGCAAAAGGTTG
TTTTCGTATCCGATACCCCGATTTTCGTATCCGATATCCCGataaattta
agaaaacatGTTTCTCGGTAGGGAAGAaaggttttcaattttcaagcaTG
AAGAAAGCAGGCAACGAAACCAAACCATCAAAAAACACAAGTGGTAAGAA
GAATAGTTCTTTTAATATTCAAAGTAGTACATGTACGATTTTTTTTGGAC
TCATTATTGCTATCAAAACTAAGGATCACATCTGTTTGAATCGAATGACA
GAATGAAGTTGAAGTAGTCATGTGTTGTTTTAACTGTCTTTTGGCTTTGT
cattccatcatcatcatcaataatCATGTCTGACAGAATTGCGAGGGCTG
GAACATTAGGCCACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGT
GGCTTAGCTAGATCTTTTCCTGAAACCAAAGAtccagaatttgaaaaaaa
gcttAATCAAGCCAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAA
ACGAGGCTAATGTACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCG
AGATATAATGCACTCCCTTTGGCTTCtgttaatgaagaaaaaaagtctcG
TTACAGCAAAAAGACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACA
TTGACATAACACATTTGAAATTCCTTTTGTCCATTGGACATAATGTCAAA
GAAATTGCTGAAAAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCT
GACCAGATTCATGAAAGACAATAACATTCCAACACCAAGGGAGCGCTATT
CTATCATTTCCGATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTA
GATTTTCCGAACTCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGG
AAATCCTCCTCGCATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTT
TCTCGAATCCAGAGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGC
AGAGTTTACAGTGTTCCAACTCCTAATCACCTGTGGCACATTGATACACA
TCATAGTTTAATCAGGTTATACTTAAAGATTGATTTCTGCANGCggtcat
tgaaaaattgttctattcgcgtcacccgcccgcatcaaattttccgctga
ttttccggtgcagagatgcggaaaaaaatctgggaaaagcaatttgttct
tttaaagtatagcttttttctcaattgctctgaagACCATTGAAAAACgg
ttttgctcgcgttaccacccgcccc Coding sequence (CDS) from alignment at scaffold_91:47..1571+ >TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_91:47..1571+ (Clytia hemisphaerica)
ATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGAAGTTTT
AGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTCCTGAAA
CCAAAGAtccagaatttgaaaaaaagcttAATCAAGCCAATGTGAATGTT
CAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACGAGTACA
TGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTTTGGCTT
CtgttaatgaagaaaaaaagtctcGTTACAGCAAAAAGACAGTTTCTGGG
AAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAAATTCCT
TTTGTCCATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGTTACTTG
GTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGACAATAAC
ATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGACCTTTT
GATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTATTCGTG
AGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCGCATTGTTCAACGT
GACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAACTGCAAG
AAGATGGGCACAAGTGGTGCCACGCAGAGTTTACAGTGTTCCAACTCCTA
ATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTTATACTTA
AAGATTGATTTCTGCANGCggtcattgaaaaattgttctattcgcgtcac
ccgcccgcatcaaattttccgctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073383-exon-scaffold_91-1491911889:47..1571 | TCONS_00073383-exon-scaffold_91-1491911889:47..1571 | Clytia hemisphaerica | exon |
| TCONS_00073383-exon-scaffold_91-1510915933:47..1571 | TCONS_00073383-exon-scaffold_91-1510915933:47..1571 | Clytia hemisphaerica | exon |
| TCONS_00073383-exon-scaffold_91-1575043694:47..1571 | TCONS_00073383-exon-scaffold_91-1575043694:47..1571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:47..1571 + |
Blast
The following BLAST results are available for this feature:
|
