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TCONS_00073383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073383
Unique NameTCONS_00073383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=transcript|length=1525bp
TTTCTTAATGtcttcaaaatgaagaaaaagggCTGTGCGGCTGTGTGAaa
tgtagcctggatatccaagctcaaaatttaagaaaaaacaaaatttacct
caacatacaaagttcttaaattatagagcttggtctccctagagaatNNN
NNNNNNNNNNNNNNNNNNACCTATGGCGTACGAAATGCACTTTAAATAGA
GTAATACTGTTTCTGACAAAGAAACTAGGTTTTCCAGGGGCAAAAGGTTG
TTTTCGTATCCGATACCCCGATTTTCGTATCCGATATCCCGataaattta
agaaaacatGTTTCTCGGTAGGGAAGAaaggttttcaattttcaagcaTG
AAGAAAGCAGGCAACGAAACCAAACCATCAAAAAACACAAGTGGTAAGAA
GAATAGTTCTTTTAATATTCAAAGTAGTACATGTACGATTTTTTTTGGAC
TCATTATTGCTATCAAAACTAAGGATCACATCTGTTTGAATCGAATGACA
GAATGAAGTTGAAGTAGTCATGTGTTGTTTTAACTGTCTTTTGGCTTTGT
cattccatcatcatcatcaataatCATGTCTGACAGAATTGCGAGGGCTG
GAACATTAGGCCACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGT
GGCTTAGCTAGATCTTTTCCTGAAACCAAAGAtccagaatttgaaaaaaa
gcttAATCAAGCCAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAA
ACGAGGCTAATGTACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCG
AGATATAATGCACTCCCTTTGGCTTCtgttaatgaagaaaaaaagtctcG
TTACAGCAAAAAGACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACA
TTGACATAACACATTTGAAATTCCTTTTGTCCATTGGACATAATGTCAAA
GAAATTGCTGAAAAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCT
GACCAGATTCATGAAAGACAATAACATTCCAACACCAAGGGAGCGCTATT
CTATCATTTCCGATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTA
GATTTTCCGAACTCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGG
AAATCCTCCTCGCATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTT
TCTCGAATCCAGAGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGC
AGAGTTTACAGTGTTCCAACTCCTAATCACCTGTGGCACATTGATACACA
TCATAGTTTAATCAGGTTATACTTAAAGATTGATTTCTGCANGCggtcat
tgaaaaattgttctattcgcgtcacccgcccgcatcaaattttccgctga
ttttccggtgcagagatgcggaaaaaaatctgggaaaagcaatttgttct
tttaaagtatagcttttttctcaattgctctgaagACCATTGAAAAACgg
ttttgctcgcgttaccacccgcccc
Run BLAST on NCBI

protein sequence of TCONS_00073383-protein

>TCONS_00073383-protein ID=TCONS_00073383-protein|Name=TCONS_00073383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSDRIARAGTLGHEEVLEDIELYIRGLARSFPETKDPEFEKKLNQANVNV
QRLAQGNTNEANVQRVHGLVSRLKSRYNALPLASVNEEKKSRYSKKTVSG
KKGNNPYDIDITHLKFLLSIGHNVKEIAEKGLLGGSMHRNTLTRFMKDNN
IPTPRERYSIISDDDLLILIRKIALDFPNSGIREVTALLRTGNPPRIVQR
DRVARLLSFSNPEATARRWAQVVPRRVYSVPTPNHLWHIDTHHSLIRLYL
KIDFCXRSLKNCSIRVTRPHQIFR
Run BLAST on NCBI

transcript from alignment at scaffold_91:47..1571+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=transcript|length=1525bp|location=Sequence derived from alignment at scaffold_91:47..1571+ (Clytia hemisphaerica)
TTTCTTAATGtcttcaaaatgaagaaaaagggCTGTGCGGCTGTGTGAaa tgtagcctggatatccaagctcaaaatttaagaaaaaacaaaatttacct caacatacaaagttcttaaattatagagcttggtctccctagagaatNNN NNNNNNNNNNNNNNNNNNACCTATGGCGTACGAAATGCACTTTAAATAGA GTAATACTGTTTCTGACAAAGAAACTAGGTTTTCCAGGGGCAAAAGGTTG TTTTCGTATCCGATACCCCGATTTTCGTATCCGATATCCCGataaattta agaaaacatGTTTCTCGGTAGGGAAGAaaggttttcaattttcaagcaTG AAGAAAGCAGGCAACGAAACCAAACCATCAAAAAACACAAGTGGTAAGAA GAATAGTTCTTTTAATATTCAAAGTAGTACATGTACGATTTTTTTTGGAC TCATTATTGCTATCAAAACTAAGGATCACATCTGTTTGAATCGAATGACA GAATGAAGTTGAAGTAGTCATGTGTTGTTTTAACTGTCTTTTGGCTTTGT cattccatcatcatcatcaataatCATGTCTGACAGAATTGCGAGGGCTG GAACATTAGGCCACGAAGAAGTTTTAGAGGACATTGAGTTGTACATTCGT GGCTTAGCTAGATCTTTTCCTGAAACCAAAGAtccagaatttgaaaaaaa gcttAATCAAGCCAATGTGAATGTTCAAAGGTTAGCTCAAGGCAACACAA ACGAGGCTAATGTACAACGAGTACATGGTCTTGTTTCTAGATTAAAATCG AGATATAATGCACTCCCTTTGGCTTCtgttaatgaagaaaaaaagtctcG TTACAGCAAAAAGACAGTTTCTGGGAAAAAAGGAAATAACCCATATGACA TTGACATAACACATTTGAAATTCCTTTTGTCCATTGGACATAATGTCAAA GAAATTGCTGAAAAAGGGTTACTTGGTGGCTCTATGCATAGAAACACTCT GACCAGATTCATGAAAGACAATAACATTCCAACACCAAGGGAGCGCTATT CTATCATTTCCGATGATGACCTTTTGATTCTCATCCGAAAAATAGCTTTA GATTTTCCGAACTCTGGTATTCGTGAGGTTACTGCTCTTCTTCGGACTGG AAATCCTCCTCGCATTGTTCAACGTGACAGAGTAGCTAGATTACTTTCTT TCTCGAATCCAGAGGCAACTGCAAGAAGATGGGCACAAGTGGTGCCACGC AGAGTTTACAGTGTTCCAACTCCTAATCACCTGTGGCACATTGATACACA TCATAGTTTAATCAGGTTATACTTAAAGATTGATTTCTGCANGCggtcat tgaaaaattgttctattcgcgtcacccgcccgcatcaaattttccgctga ttttccggtgcagagatgcggaaaaaaatctgggaaaagcaatttgttct tttaaagtatagcttttttctcaattgctctgaagACCATTGAAAAACgg ttttgctcgcgttaccacccgcccc

Coding sequence (CDS) from alignment at scaffold_91:47..1571+

>TCONS_00073383 ID=TCONS_00073383|Name=TCONS_00073383|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_91:47..1571+ (Clytia hemisphaerica)
ATGTCTGACAGAATTGCGAGGGCTGGAACATTAGGCCACGAAGAAGTTTT
AGAGGACATTGAGTTGTACATTCGTGGCTTAGCTAGATCTTTTCCTGAAA
CCAAAGAtccagaatttgaaaaaaagcttAATCAAGCCAATGTGAATGTT
CAAAGGTTAGCTCAAGGCAACACAAACGAGGCTAATGTACAACGAGTACA
TGGTCTTGTTTCTAGATTAAAATCGAGATATAATGCACTCCCTTTGGCTT
CtgttaatgaagaaaaaaagtctcGTTACAGCAAAAAGACAGTTTCTGGG
AAAAAAGGAAATAACCCATATGACATTGACATAACACATTTGAAATTCCT
TTTGTCCATTGGACATAATGTCAAAGAAATTGCTGAAAAAGGGTTACTTG
GTGGCTCTATGCATAGAAACACTCTGACCAGATTCATGAAAGACAATAAC
ATTCCAACACCAAGGGAGCGCTATTCTATCATTTCCGATGATGACCTTTT
GATTCTCATCCGAAAAATAGCTTTAGATTTTCCGAACTCTGGTATTCGTG
AGGTTACTGCTCTTCTTCGGACTGGAAATCCTCCTCGCATTGTTCAACGT
GACAGAGTAGCTAGATTACTTTCTTTCTCGAATCCAGAGGCAACTGCAAG
AAGATGGGCACAAGTGGTGCCACGCAGAGTTTACAGTGTTCCAACTCCTA
ATCACCTGTGGCACATTGATACACATCATAGTTTAATCAGGTTATACTTA
AAGATTGATTTCTGCANGCggtcattgaaaaattgttctattcgcgtcac
ccgcccgcatcaaattttccgctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045537XLOC_045537Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073383-proteinTCONS_00073383-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073383-exon-scaffold_91-1491911889:47..1571TCONS_00073383-exon-scaffold_91-1491911889:47..1571Clytia hemisphaericaexon
TCONS_00073383-exon-scaffold_91-1510915933:47..1571TCONS_00073383-exon-scaffold_91-1510915933:47..1571Clytia hemisphaericaexon
TCONS_00073383-exon-scaffold_91-1575043694:47..1571TCONS_00073383-exon-scaffold_91-1575043694:47..1571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:47..1571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.988284 1.56119 2.28612 2.78539 2.68453 2.00873 1.83237 2.70626 1.60233 2.63032 2.91947 2.40546 1.96439 1.93005 1.77305 1.73561 1.17788 1.98512 1.50482 1.80182 2.25714 2.31803 0.676083 1.29101 3.48772 3.04032 2.0659 0.980057 2.20697 2.6597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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