Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073382
Unique NameTCONS_00073382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073382 ID=TCONS_00073382|Name=TCONS_00073382|organism=Clytia hemisphaerica|type=transcript|length=514bp
GCAAATTTACGGAATATTGCAGCACTGCAGAACTATGCAACTTGCGGAAC
TGACATCAacttaaaaaaccttttttcgtTCTAGATTATAACAATAAAGA
GCAGAGGAAAGATGGCGCAAACAGTTGAAATCATCGACGTTACCAAAGTG
AACGAGATAGTTAAAGCAGCTGTAGAACGTACGTCTCAATGGTCAGGGAA
GGTTGAACCTTATGCCAAGGATATTGTGGAACATTACAATGCGGAGGCTG
AAAGTTACGAAGAGATGTACTTAACAATTGGTTATCATGATCATGAGAAA
GTTAACGAGATCGCGTGTGAGCTTATCCCAGATCAAGCGACAAGAGAGGT
GATTGAAGTTCTAGACATGGGCTGTGGAACTGGGCTTGTAGGAGATCAAC
TTTTCAAGGTTGGAGGATTCAAGAACATCTTTGGTGTTGATGCTTCCGTT
GAAATGATGGCCAAAGCAAAAGCTAAGGAATCCTACAAGCAGACTATCGA
GCTTTGGCTTGGNN
Run BLAST on NCBI

protein sequence of TCONS_00073382-protein

>TCONS_00073382-protein ID=TCONS_00073382-protein|Name=TCONS_00073382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MAQTVEIIDVTKVNEIVKAAVERTSQWSGKVEPYAKDIVEHYNAEAESYE
EMYLTIGYHDHEKVNEIACELIPDQATREVIEVLDMGCGTGLVGDQLFKV
GGFKNIFGVDASVEMMAKAKAKESYKQTIELWLX
Run BLAST on NCBI

transcript from alignment at scaffold_90:290776..291289

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073382 ID=TCONS_00073382|Name=TCONS_00073382|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at scaffold_90:290776..291289 (Clytia hemisphaerica)
NNCCAAGCCAAAGCTCGATAGTCTGCTTGTAGGATTCCTTAGCTTTTGCT TTGGCCATCATTTCAACGGAAGCATCAACACCAAAGATGTTCTTGAATCC TCCAACCTTGAAAAGTTGATCTCCTACAAGCCCAGTTCCACAGCCCATGT CTAGAACTTCAATCACCTCTCTTGTCGCTTGATCTGGGATAAGCTCACAC GCGATCTCGTTAACTTTCTCATGATCATGATAACCAATTGTTAAGTACAT CTCTTCGTAACTTTCAGCCTCCGCATTGTAATGTTCCACAATATCCTTGG CATAAGGTTCAACCTTCCCTGACCATTGAGACGTACGTTCTACAGCTGCT TTAACTATCTCGTTCACTTTGGTAACGTCGATGATTTCAACTGTTTGCGC CATCTTTCCTCTGCTCTTTATTGTTATAATCTAGAacgaaaaaaggtttt ttaagtTGATGTCAGTTCCGCAAGTTGCATAGTTCTGCAGTGCTGCAATA TTCCGTAAATTTGC

Coding sequence (CDS) from alignment at scaffold_90:290776..291289

>TCONS_00073382 ID=TCONS_00073382|Name=TCONS_00073382|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_90:290776..291289 (Clytia hemisphaerica)
NCCAAGCCAAAGCTCGATAGTCTGCTTGTAGGATTCCTTAGCTTTTGCTT
TGGCCATCATTTCAACGGAAGCATCAACACCAAAGATGTTCTTGAATCCT
CCAACCTTGAAAAGTTGATCTCCTACAAGCCCAGTTCCACAGCCCATGTC
TAGAACTTCAATCACCTCTCTTGTCGCTTGATCTGGGATAAGCTCACACG
CGATCTCGTTAACTTTCTCATGATCATGATAACCAATTGTTAAGTACATC
TCTTCGTAACTTTCAGCCTCCGCATTGTAATGTTCCACAATATCCTTGGC
ATAAGGTTCAACCTTCCCTGACCATTGAGACGTACGTTCTACAGCTGCTT
TAACTATCTCGTTCACTTTGGTAACGTCGATGATTTCAACTGTTTGCGCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045536XLOC_045536Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073382-proteinTCONS_00073382-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073382-exon-scaffold_90-1491911889:290776..291289TCONS_00073382-exon-scaffold_90-1491911889:290776..291289Clytia hemisphaericaexon
TCONS_00073382-exon-scaffold_90-1510915933:290776..291289TCONS_00073382-exon-scaffold_90-1510915933:290776..291289Clytia hemisphaericaexon
TCONS_00073382-exon-scaffold_90-1575043694:290776..291289TCONS_00073382-exon-scaffold_90-1575043694:290776..291289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:290776..291289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.734433 0.547765 1.29252 0.296466 10.064 7.93823 41.2813 40.8864 26.4552 28.2734 21.4006 13.6763 6.6076 7.12113 11.6196 17.9753 6.89268 5.83143 2.54465 2.27654 24.142 22.3869 33.4671 37.8156 70.4141 43.5821 22.3498 11.9991 162.014 99.5581
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top