Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00073380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073380
Unique NameTCONS_00073380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073380 ID=TCONS_00073380|Name=TCONS_00073380|organism=Clytia hemisphaerica|type=transcript|length=1054bp
GGAAAATGTCACTGACTTTTGACTCCTAAGAATAAGAATAAACAACTTGA
CTTCTTGATTATTTAAGTGCACTTTGTTATTCTTGTCTGGTGTttataaa
gtaaataaaatCTTACAAGATATTCTCACAGGCATAAAAGCCATAAAACA
TAAAGGTACAAAATGTGCAATTATAAAGTTGCATATTATGTGCATGATTG
TATGTCCTTGTGTTATGTCGATTATTTCGCCAATCTATATAGAGGTCTTT
GGTCTTCTTCGTGGGCTACTCGCGCAACGATTTAACCATTGTGATCTTTA
GCGCTCGTTCTTTCCAatccaaaaattgagaatgcGAGAATATATTGGGA
TTCTAGACTCTTTTGATGACGAAACTGATGTCAAAGGGAATCGATGTTTC
TACTTTCTCTTGACAATGCGACGATCAAAAACCAGTGTGTTGTAGTCGCC
AGTACAAGTGTTTTGTTTATATAATATTTCTCACATTTTCGCCATACAAC
CAGCTTTTAGAAACGTTGATTTATCCTCCATAAAAGTTATTTGGATATTA
TGGATGTTCGATGGTCATTCGTTTAACGTTGTGTCCTGATTTGACAACTA
CCCACGATTTAGTTGACAGGAAACCATTCCCACCCTTCATCTTGGTCAGC
GATAAATCTCGATCttggaatttgaaaaatcttgattCCAAATCCCAATG
CCATTCCTTTATCCTTGGATTGATTGTTTGATGGTTTTGCGTTTAATTTG
CAGAACGAGATAATTTTCTGTAATACTTGTATGTTCCACTTCTTCTTTGA
GTTCTTGGTTTTACCACATTTGGTAGTTTTGCTCATATCAACttgcattt
tgaaattttccaccacttttcactttttaagcTCTGTGTTTGAAACCGTT
GATCGTTGCAAATGAGAGGATTtaataatttcatgtttctcTTATACTGA
TTAAACTTGTCAATCAAAGTCTCTAACCGTCGAAAGCGGTTTAATTGGAC
AAATTGATTTACGAAGGAGAACGTCTAAAAGTCATTCTCTTTCCTCACAA
ATAT
Run BLAST on NCBI

transcript from alignment at scaffold_90:267548..268601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073380 ID=TCONS_00073380|Name=TCONS_00073380|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at scaffold_90:267548..268601 (Clytia hemisphaerica)
ATATTTGTGAGGAAAGAGAATGACTTTTAGACGTTCTCCTTCGTAAATCA ATTTGTCCAATTAAACCGCTTTCGACGGTTAGAGACTTTGATTGACAAGT TTAATCAGTATAAgagaaacatgaaattattaAATCCTCTCATTTGCAAC GATCAACGGTTTCAAACACAGAgcttaaaaagtgaaaagtggtggaaaat ttcaaaatgcaaGTTGATATGAGCAAAACTACCAAATGTGGTAAAACCAA GAACTCAAAGAAGAAGTGGAACATACAAGTATTACAGAAAATTATCTCGT TCTGCAAATTAAACGCAAAACCATCAAACAATCAATCCAAGGATAAAGGA ATGGCATTGGGATTTGGaatcaagatttttcaaattccaaGATCGAGATT TATCGCTGACCAAGATGAAGGGTGGGAATGGTTTCCTGTCAACTAAATCG TGGGTAGTTGTCAAATCAGGACACAACGTTAAACGAATGACCATCGAACA TCCATAATATCCAAATAACTTTTATGGAGGATAAATCAACGTTTCTAAAA GCTGGTTGTATGGCGAAAATGTGAGAAATATTATATAAACAAAACACTTG TACTGGCGACTACAACACACTGGTTTTTGATCGTCGCATTGTCAAGAGAA AGTAGAAACATCGATTCCCTTTGACATCAGTTTCGTCATCAAAAGAGTCT AGAATCCCAATATATTCTCgcattctcaatttttggatTGGAAAGAACGA GCGCTAAAGATCACAATGGTTAAATCGTTGCGCGAGTAGCCCACGAAGAA GACCAAAGACCTCTATATAGATTGGCGAAATAATCGACATAACACAAGGA CATACAATCATGCACATAATATGCAACTTTATAATTGCACATTTTGTACC TTTATGTTTTATGGCTTTTATGCCTGTGAGAATATCTTGTAAGattttat ttactttataaACACCAGACAAGAATAACAAAGTGCACTTAAATAATCAA GAAGTCAAGTTGTTTATTCTTATTCTTAGGAGTCAAAAGTCAGTGACATT TTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045534XLOC_045534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073380-exon-scaffold_90-1491911889:267548..268601TCONS_00073380-exon-scaffold_90-1491911889:267548..268601Clytia hemisphaericaexon
TCONS_00073380-exon-scaffold_90-1510915933:267548..268601TCONS_00073380-exon-scaffold_90-1510915933:267548..268601Clytia hemisphaericaexon
TCONS_00073380-exon-scaffold_90-1575043694:267548..268601TCONS_00073380-exon-scaffold_90-1575043694:267548..268601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:267548..268601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293898 0.204712 0.142614 0.0465086 1.64197 2.1476 8.79857 8.84353 12.7723 9.07163 3.44549 79.1328 14.9389 12.1794 21.0275 24.0753 55.3777 36.0204 13.6572 18.6815 6.17028 4.87088 4.71769 6.17101 3.38085 3.41964 54.6344 3.44068 0.74561 1.37688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top